BAC Information

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BAC

Clone NameB6Ng01-270I19
Chromosome18 (Build37)
Map Location 80,219,711 - 80,220,707
singlet/doubletsinglet
Overlap geneLOC620692
Upstream geneSetbp1, LOC100039242, LOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604
Downstream geneLOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1, Atp9b, Sall3, LOC665124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270I19.bB6Ng01-270I19.g
ACCGA072861GA072862
length1,226992
definitionB6Ng01-270I19.b B6Ng01-270I19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgatagggttaaatggattaggaggtgtggccttgttggagg
aagtgtgtaactctgggggtgagctgtaaggtttcaaaagcttttaggat
agcccccatcccttccagttgtttggggctcacaaggagaccaagttgca
cttacagatgtgcggggaggcctaagtccagcctgtgtatgttctttggt
tggtggttcagtctctgagagccccaagggtccaggttagttgactctat
tggtcttcccctccagggcccacaatctttcctcctattcttccataaga
gtccccaagctccatccactgtttttctgtgggtgcctgcgtctgtctga
gtcagctgctggtggagcctctcagtgggcagccatgctagatttctgtc
tgcaagcaaaacagaatataattgtgtcagggactggtgctttcccatgg
gatggatctcagattgggctggttgttggttggccattcccccagtctct
acttgagtccctcctcgttgttgtgcatctcttgtagacaggatacattt
tgggtcgaaagttttgtgggtgcattggtgaccctattgctccactgggg
ttcctgtctggctacaggaagtggccaattcaggatccgtatgcccaatg
ctgtgatttacagttaaggacacctccattgcttcttgggcgcctccctt
atcccaggtctctgcctcttcctggaaatgctctgtacctcccctccctc
atcagttgcagatttccattcattctcatggccatctcatgatttagctt
tatttttggctaattacaaccaaaggtcgcttttggtggcccactcgtga
gtggctctgaacatcctaacagcgaagttgccagcagaggaaaggagatc
aagcacaaggataggatccttactggttaaaggggagaatgggttgaagt
gggagaggaacttctctgggactgtagcaaggtccactgttctaaatgcc
ctgtagtcagtcttttgacttggcctcagagtctcttgacaatctcctgg
agtgaaggctgtgatattgaagtcagctcgtcaagtagccatgttaagtt
cggacaccttaactcaatgctgtgtacacgtcactggtgccttgccaaaa
agaatgctgaaactctgccctgttcgatgatctgctgttgccagtgaacc
ctaggaattaaccgagagacacacgt
gaattccagaccctcatcacacacctgtcagaaccagtggatgtgtacag
cgaatggatagatgcctgtgaggcagccaattagtagcgatgtcaaggac
gggctcctccccagccgccatctggctaccaatccggaagttccaggact
ccaaggtacaggtccaggactgggacagcccgccctcagtgtggatggag
cgggtgtgaatgaggaggtgtgcacaactgcagatgtgattgtagcgatg
gaggcgagcgattgcaccaagccgcccatggtggcctcacagaacccaac
acctcaagtgcctctgaaagctttgagttgctctggtcttcagccacgac
cttgcgaacaagcttgagattcctgtcttctccagtgacggttcctggca
tcccaggcaaggaacagctatgggactacaagtctcctcagacaccacac
cagcaccttccccagaaaaactctgtacaaggacctgaactgtgatgacc
tcgggaccagggtaaagaccaagagattcgttaatgagaaggactggttc
agaccatagacagaggagccgagaaggaccagttcaatttgagcaggatc
cttttggttttggacaagtttttggcagaagcaaaacatcatgttggttc
aaaaagaccctgggagaggatgtactcccaaggaacaggggcacgaaggc
aacaagccaagcgaagaggtagagaggcctcctgaaatgaaagctgacat
atacagccggggatggcctggtctagccatccttctgtgagggaagatgc
acctaaccccggagagacttgagaccctggagagtggggaagcctggtgg
gatcaggggtgctggtggggagtggggatatcatctcctgggttcatggg
ggaggaggaatgtgatgataactgccagaggagggacacgacatatataa
agactgatctgtcaaaacataattaagatataaaaagggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_80219711_80220707
seq2: B6Ng01-270I19.g_63_1054

seq1  GAATTCCAGACCCTCATCACACACCTGTCAGAACCAGTGGATGTGTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCCTCATCACACACCTGTCAGAACCAGTGGATGTGTACAG  50

seq1  CGAATGGATAGATGCCTGTGAGGCAGCCAATTAGTAGCGATGTCAAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGGATAGATGCCTGTGAGGCAGCCAATTAGTAGCGATGTCAAGGAC  100

seq1  GGGCTCCTCCCCAGCCGCCATCTGGCTACCAATCCGGAAGTTCCAGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCTCCCCAGCCGCCATCTGGCTACCAATCCGGAAGTTCCAGGACT  150

seq1  CCAAGGTACAGGTCCAGGACTGGGACAGCCCGCCCTCAGTGTGGATGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTACAGGTCCAGGACTGGGACAGCCCGCCCTCAGTGTGGATGGAG  200

seq1  CGGGTGTGAATGAGGAGGTGTGCACAACTGCAGATGTGATTGTAGCGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGTGAATGAGGAGGTGTGCACAACTGCAGATGTGATTGTAGCGATG  250

seq1  GAGGCGAGCGATTGCACCAAGCCGCCCATGGTGGCCTCACAGAACCCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGAGCGATTGCACCAAGCCGCCCATGGTGGCCTCACAGAACCCAAC  300

seq1  ACCTCAAGTGCCTCTGAAAGCTTTGAGTTGCTCTGGTCTTCAGCCACGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAGTGCCTCTGAAAGCTTTGAGTTGCTCTGGTCTTCAGCCACGAC  350

seq1  CTTGCGAACAAGCTTGAGATTCCTGTCTTCTCCAGTGACGGTTCCTGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCGAACAAGCTTGAGATTCCTGTCTTCTCCAGTGACGGTTCCTGGCA  400

seq1  TCCCAGGCAAGGAACAGCTATGGGACTACAAGTCTCCTCAGACACCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCAAGGAACAGCTATGGGACTACAAGTCTCCTCAGACACCACAC  450

seq1  CAGCACCTTCCCCAGAAAAACTCTGTACAAGGACCTGAACTGTGATGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTTCCCCAGAAAAACTCTGTACAAGGACCTGAACTGTGATGACC  500

seq1  TCGGGACCAGGGTAAAGACCAAGAGATTCGTTAATGAGAAGGACTGGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGACCAGGGTAAAGACCAAGAGATTCGTTAATGAGAAGGACTGGTTC  550

seq1  AGACCATAGACAGAGGAGCCGAGAAGGACCAGTTCAATTTGAGCAGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATAGACAGAGGAGCCGAGAAGGACCAGTTCAATTTGAGCAGGATC  600

seq1  CTTTTGGTTTTGGACAAGTTTTTGGCAGAAGCAAAACATCATGTTGGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGTTTTGGACAAGTTTTTGGCAGAAGCAAAACATCATGTTGGTTC  650

seq1  AAAAAGACCCTGGGAGAGGATGTACTCCCAAGGAACAGGGGCACGAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACCCTGGGAGAGGATGTACTCCCAAGGAACAGGGGCACGAAGGC  700

seq1  AACAAGCCAAGCGAAGAGGTAGAGAGGCCTCCTGAAATGAAAGCTGACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCCAAGCGAAGAGGTAGAGAGGCCTCCTGAAATGAAAGCTGACAT  750

seq1  ATACAGCCGGGGATGGCCTGGTCTAGCCATCCTTCTGTGAGGGAAGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCCGGGGATGGCCTGGTCTAGCCATCCTTCTGTGAGGGAAGATGC  800

seq1  ACCTAACCCCGGAGAGACTTGAGACCCTGGAGAGTGGGGAAGCCTGGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACCCCGGAGAGACTTGAGACCCTGGAGAGTGGGGAAGCCTGGTGG  850

seq1  GATCAGGGGTGCTGGTGGGGAGTGGGGATATCATCTCTTGGGTTCATGGG  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATCAGGGGTGCTGGTGGGGAGTGGGGATATCATCTCCTGGGTTCATGGG  900

seq1  GGAGGAGGAATGTGATGAAGAACTGTCAGAGGAGGGACAACGACAGAGAT  950
      ||||||||||||||||| | ||||| |||||||||||| |||||| | ||
seq2  GGAGGAGGAATGTGATG-ATAACTGCCAGAGGAGGGAC-ACGACATATAT  948

seq1  AAAGACTGGACTGTCAAAAACATAATTAAAGATAATAAAAAGGAAAA  997
      ||||||||  ||||| ||||||||||| ||||| ||||||||| |||
seq2  AAAGACTGATCTGTC-AAAACATAATT-AAGAT-ATAAAAAGGGAAA  992