BAC Information

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BAC

Clone NameB6Ng01-271M04
Chromosome18 (Build37)
Map Location 44,325,821 - 44,326,941
singlet/doubletsinglet
Overlap gene9530002K18Rik
Upstream geneEG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855
Downstream geneSpink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2, LOC626309, LOC225457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271M04.bB6Ng01-271M04.g
ACCGA073757GA073758
length1,1171,121
definitionB6Ng01-271M04.b B6Ng01-271M04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacttttatcatgaaggggtgttggattttg
tcaaatgctttctcagcatataactagatgatcatgtggtttttgttttt
gagtttgtttatatagtggattacattgatggatttccatatattaaacc
atccctgtatccctaggatgaagcctacttgatcatgatggatgatcgtt
ttgatgtgctcttggattcaatttgcgaggattttatttagtatttttgc
attgatattcataagggaaattggtctgaagttctctttctttgttgggt
ctttatgtcgtttaggtatcagagtaattgtggcttcatagaatgaattg
ggtagaataccttctgtttctattttgtgaaacagtttgaggagagttgg
aattaggtcttctttgaaggtctgatagaacttagaactctgcactaaac
ccatctggtcctgggctttttttggttgggagactattaatgactagttc
tatttctttaggggaaatggaactgtttagatcgttaatttcatcctgat
ttaacattggtacctggtatctgtttaggaaattgtccatttcactcagg
ttttccagttttgttgagtatagccttttgtagtaggatctgacgatgtt
taggatttcctcaggttctgttgttatgtctcctttttcatttctgattt
tgttaactaggatattgtccctgtgccgtctagttagtctggctaagggt
ttatctatcttgttgattttctcaaagaaccagctcctggtttggttgat
tatttaagtagttctttttgtttccacttggttgatttcagccctaagtt
tgattatttcctgccgtctactcctcttgggtgaatttgtttccttttgt
tctagagcttttaggtatgctgtcaagctgttagtgttatgctctctcta
gtttcttttggagacaactcaaaaactatgaatttcttcttaagaaatgc
tttcattgtgtccataagttggggtatgtgtgacttcattttcctaaact
ctaaaagttttaatccttctttattttcttcctgaccaagtatcatggag
atgaagtagtgtgtcac
gaattcaagtttccaaatatcttgctataggttcagattcttaatggtgg
ggaatattcctaccatcattgtagtaaacattctagaattatattttata
ttcatcattgaaaatgccttaactctgaatatcaaagtattcatttgacc
ataatcaacagctcccccaagaaaggatccttaataatattgagattatt
taacattttattgattagaatatctatgattaaaactcacagtttatgta
acataagacaaaaataaagaaaacaagtattcacatcaccctcaaatcat
tgaaaataaaatcattcagttccttgttctcattggaaatattcttcaat
cttctgtattccacataatgtataatagaagacttcatttgttggttagg
aatttaaggccctggttgagaacattccacttgattgtatgaagcaccat
gaaaccattatttataaatacaaataccatgatacctatatttaagtttt
tccactctgtaaacaaaaaagaagaaaaaagtaaatttttgaacaaccat
tttaatttaattgaggaataagtcattactttttaatgaaaagtcattaa
catgatttggtgtgggttgtctttggtaccctctttaaatgcaactgggc
ctctcctactcccggcacttaaaaggagtcctttgtccaaattgggaaaa
gtcaataaattctaatatactcaatcctgacatagacttgggacctccct
attgcaaaggagaaaagaattagaaattgtcttatgttttcctagtagaa
aaaatacaatttgaaactaattgaacacaaatttttatagatggaagcgt
ttgagagagacaaaatgtgcagtgagtaaaagtagagagaatatgtgtgt
gattttgatagcattaaggacataatatttaagcatatcctaattaataa
aaagaggatacagtcgtcagtgatgggaacacagaaagcggggttggaag
gaagtgccctagactgcctctgaacttgatggccttgggtcttctcacaa
gtgaacagaaaaagagagatgctacgagttccctctgtagtttagagcca
attgttaatacattcaaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44325821_44326941
seq2: B6Ng01-271M04.g_68_1188

seq1  GAATTCAAGTTTCCAAATATCTTGCTATAGGTTCAGATTCTTAATGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTTCCAAATATCTTGCTATAGGTTCAGATTCTTAATGGTGG  50

seq1  GGAATATTCCTACCATCATTGTAGTAAACATTCTAGAATTATATTTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTCCTACCATCATTGTAGTAAACATTCTAGAATTATATTTTATA  100

seq1  TTCATCATTGAAAATGCCTTAACTCTGAATATCAAAGTATTCATTTGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCATTGAAAATGCCTTAACTCTGAATATCAAAGTATTCATTTGACC  150

seq1  ATAATCAACAGCTCCCCCAAGAAAGGATCCTTAATAATATTGAGATTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAACAGCTCCCCCAAGAAAGGATCCTTAATAATATTGAGATTATT  200

seq1  TAACATTTTATTGATTAGAATATCTATGATTAAAACTCACAGTTTATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTTATTGATTAGAATATCTATGATTAAAACTCACAGTTTATGTA  250

seq1  ACATAAGACAAAAATAAAGAAAACAAGTATTCACATCACCCTCAAATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGACAAAAATAAAGAAAACAAGTATTCACATCACCCTCAAATCAT  300

seq1  TGAAAATAAAATCATTCAGTTCCTTGTTCTCATTGGAAATATTCTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAAAATCATTCAGTTCCTTGTTCTCATTGGAAATATTCTTCAAT  350

seq1  CTTCTGTATTCCACATAATGTATAATAGAAGACTTCATTTGTTGGTTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTATTCCACATAATGTATAATAGAAGACTTCATTTGTTGGTTAGG  400

seq1  AATTTAAGGCCCTGGTTGAGAACATTCCACTTGATTGTATGAAGCACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGGCCCTGGTTGAGAACATTCCACTTGATTGTATGAAGCACCAT  450

seq1  GAAACCATTATTTATAAATACAAATACCATGATACCTATATTTAAGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCATTATTTATAAATACAAATACCATGATACCTATATTTAAGTTTT  500

seq1  TCCACTCTGTAAACAAAAAAGAAGAAAAAAGTAAATTTTTGAACAACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCTGTAAACAAAAAAGAAGAAAAAAGTAAATTTTTGAACAACCAT  550

seq1  TTTAATTTAATTGAGGAATAAGTCATTACTTTTTAATGAAAAGTCATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTAATTGAGGAATAAGTCATTACTTTTTAATGAAAAGTCATTAA  600

seq1  CATGATTTGGTGTGGGTTGTCTTTGGTACCCTCTTTAAATGCAACTGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTGGTGTGGGTTGTCTTTGGTACCCTCTTTAAATGCAACTGGGC  650

seq1  CTCTCCTACTCCCGGCACTTAAAAGGAGTCCTTTGTCCAAATTGGGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTACTCCCGGCACTTAAAAGGAGTCCTTTGTCCAAATTGGGAAAA  700

seq1  GTCAATAAATTCTAATATACTCAATCCTGACATAGACTTGGGACCTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATAAATTCTAATATACTCAATCCTGACATAGACTTGGGACCTCCCT  750

seq1  ATTGCAAAGGAGAAAAGAATTAGAAATTGTCTTATGTTTTCCTAGTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAAGGAGAAAAGAATTAGAAATTGTCTTATGTTTTCCTAGTAGAA  800

seq1  AAAATACAATTTGAAACTAATTGAACACAAATTTTTATAGATGGAAGCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAATTTGAAACTAATTGAACACAAATTTTTATAGATGGAAGCGT  850

seq1  TTGAGAGAGACAAAATGTGCAGTGAGTAAAAGTAGAGAGAATATGTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGAGACAAAATGTGCAGTGAGTAAAAGTAGAGAGAATATGTGTGT  900

seq1  GATTTTGATAGCATTAAGGACATAATATTTAAGCATATCCTAATTAATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGATAGCATTAAGGACATAATATTTAAGCATATCCTAATTAATAA  950

seq1  AAAGAGGATACAGTCGTCAGTGAT-GGAACACAGAAAGCGGGGTTGGAAG  999
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAGAGGATACAGTCGTCAGTGATGGGAACACAGAAAGCGGGGTTGGAAG  1000

seq1  GAAGTGCCCTAGACTG-CTCTGAACTTGATGG-CTTGGGTC-TCTCAACA  1046
      |||||||||||||||| ||||||||||||||| |||||||| |||| |||
seq2  GAAGTGCCCTAGACTGCCTCTGAACTTGATGGCCTTGGGTCTTCTC-ACA  1049

seq1  AGTTGAACAG-AAAAGAGAGATTGCTACAGAAGTCCCTCTGTAGTTTTAG  1095
      || ||||||| |||||||||| |||||| ||  ||||||||||| |||||
seq2  AG-TGAACAGAAAAAGAGAGA-TGCTAC-GAGTTCCCTCTGTAG-TTTAG  1095

seq1  AGCCAATTG-TAATACATTTCAAAATT  1121
      ||||||||| ||||||| |||||||||
seq2  AGCCAATTGTTAATACA-TTCAAAATT  1121