BAC Information

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BAC

Clone NameB6Ng01-272M08
Chromosome18 (Build37)
Map Location 38,949,296 - 39,114,714
singlet/doubletdoublet
Overlap geneFgf1, EG545253
Upstream genePcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894
Downstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272M08.bB6Ng01-272M08.g
ACCGA074512GA074513
length6231,154
definitionB6Ng01-272M08.b B6Ng01-272M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,949,296 - 38,949,914)(39,113,548 - 39,114,714)
sequence
gaattctaggccagcccagtcttcatagtaagtgagtctaggccagcgag
agttttacagtgagacccagtctcaattaaaaaaaaaaaaattcttttga
gtcagagtggttaaaaagatggaatggattagggaaaactccctttcttc
tttctttccttttcttctttctttccttttcttctttctttctttctttc
tttctttctttctttctttctttctttctctctctctctctctctctctc
tctctctctctttcttcttcttcttcttcgtcttcttcttcttctttttt
tttttttgctgatcttttgtttgttttttgaggcagggcttcagagtcta
tatatgggagaaattacagaatcagaaaagtcagattactgtttttagag
cttttatagtacagatagaggctgcatcatgaagttttgttgatagcagg
cccacataggcagtgaggttccatttaattagattgcctaagaaactgga
cataacaggtataccagtaatccagaattcaggaggctgaggcataagga
ccaccagttcaaggttagactgagttatataacaagatcttttaagaggg
gggagagtggaagagagaggggg
gaattcacctggaagtatttcctctttaatcagctcatccttggcaagta
gaggaaagctggaggagacaggaagagaatggggttggaaaagacccaga
aggtctgggaagatggctcactagtcttcataagccaaggtttgatttcc
cagaacctacataaaaaagcctgacctggtggcctacctgtgagcccagc
cctgcggaggtggagactggaggatccctggagtttgttagccaggcggt
ctagctgaaacagcgagttctgagttcactacgagaccctgactcagtta
ataaggtagaaaatgattgaagaagatgctgccaatgtgatgtgaaggaa
acctctggtctccacacttaacacacacctatgtgcacttgcatatatat
gtgcaacacaaatgtgctcgcgcaagcgcgcacacacatacacacacaca
caaagctaatataaaaggtctgccaaagactggaatctaggcaaagagac
ggttccaatggcggaagttaaagccataaatgctgaacgagaccagagct
acaatcctctctgtgtatgcttgagagagttgagtggctgttgacagagc
tttagtgttccaggctttctgcgctgggccaggaactcctactgggaccc
ttagaagatgccacctgtgcccatactctgcatcatccttcaaaggttcc
atatgccacacccctggtttccattttagataccaccaagcctgcaccag
ggacaggtgcaggcagtaggaagggtggcctcacagtgttatttggctgg
gctcttctggtggcctggatgtaccttctaagaactatttctggtactct
taccaagcaattccctctccaccctcttaaacaggcatcagacccgcact
acaggagtgtctcacttccagtcctgctgcctccatttctgagattcttc
ctcagaaagcacacaccagctatgggaactctcagtgacaacagctgaga
gatggggccggggaactgcctcattcagcatcgaaattcagagaggatcc
tcagttaatgtgtgtcagcaaggtctgccgaagttcacagtgaatgtgaa
ccgtaggagattagcaaagaaaccgcttgccgtactgtgatgaaacaggc
atcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_38949296_38949914
seq2: B6Ng01-272M08.b_48_670

seq1  GAATTCTAGGCCAGCCCAGTCTTCATAGTAAGTGAGTCTAGGCCAGCGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCCAGCCCAGTCTTCATAGTAAGTGAGTCTAGGCCAGCGAG  50

seq1  AGTTTTACAGTGAGACCCAGTCTCAATTAAAAAAAAAAAAATTCTTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACAGTGAGACCCAGTCTCAATTAAAAAAAAAAAAATTCTTTTGA  100

seq1  GTCAGAGTGGTTAAAAAGATGGAATGGATTAGGGAAAACTCCCTTTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGTGGTTAAAAAGATGGAATGGATTAGGGAAAACTCCCTTTCTTC  150

seq1  TTTCTTTCCTTTTCTTCTTTCTTTCCTTTTC----TTCTTTCTTTCTTTC  196
      |||||||||||||||||||||||||||||||    |||||||||||||||
seq2  TTTCTTTCCTTTTCTTCTTTCTTTCCTTTTCTTCTTTCTTTCTTTCTTTC  200

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTC  250

seq1  TCTCTCTCTCTTTCTTCTTCTTCTTCTTCGTCTTCTTCTTCTTCTTTTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTTTCTTCTTCTTCTTCTTCGTCTTCTTCTTCTTCTTTTTT  300

seq1  TTTTTTTGCTGATCTTTTGTTTGTTTTTTGAGGCAGGGCTTCAGAGTCTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGCTGATCTTTTGTTTGTTTTTTGAGGCAGGGCTTCAGAGTCTA  350

seq1  TATATGGGAGAAATTACAGAATCAGAAAAGTCAGATTACTGTTTTTAGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGGAGAAATTACAGAATCAGAAAAGTCAGATTACTGTTTTTAGAG  400

seq1  CTTTTATAGTACAGATAGAGGCTGCATCATGAAGTTTTGTTGATAGCAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAGTACAGATAGAGGCTGCATCATGAAGTTTTGTTGATAGCAGG  450

seq1  CCCACATAGGCAGTGAGGTTCCATTTAATTAGATTGCCTAAGAAACTGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATAGGCAGTGAGGTTCCATTTAATTAGATTGCCTAAGAAACTGGA  500

seq1  CATAACAGGTATACCAGTAATCCAGAATTCAGGAGGCTGAGGCATAAGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAGGTATACCAGTAATCCAGAATTCAGGAGGCTGAGGCATAAGGA  550

seq1  CCACCAGTTCAAGGTTAGACTGAGTTATATAACAAGATCTTTTAAGAGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGTTCAAGGTTAGACTGAGTTATATAACAAGATCTTTTAAGAGGG  600

seq1  GGGAGAGTGGAAGAGAGAGGGGG  619
      |||||||||||||||||||||||
seq2  GGGAGAGTGGAAGAGAGAGGGGG  623

seq1: chr18_39113548_39114714
seq2: B6Ng01-272M08.g_71_1223 (reverse)

seq1  GATGCCTGTTTCATCACA--TCAGCAAGGCTGTTTTCTTTTGCTAAAATC  48
      ||||||||||||||||||   | |||| || ||||   ||||||||    
seq2  GATGCCTGTTTCATCACAGTACGGCAA-GCGGTTT--CTTTGCTAA----  43

seq1  CTCCCCTAAGTGTTCACA-TCACTGTGGAACTTCTGCAAGAACTTTCCTC  97
       || |||| | ||||||| ||||||| ||||||| || ||| ||| |   
seq2  -TCTCCTACG-GTTCACATTCACTGT-GAACTTCGGC-AGACCTTGC--T  87

seq1  GACACCACAATCTACTGAGGGATCCTCTCTGAATTTCTGATGCTGAATGA  147
      |||| ||| ||  ||||| |||||||||||||||||| ||||||||||||
seq2  GACA-CAC-ATTAACTGA-GGATCCTCTCTGAATTTC-GATGCTGAATGA  133

seq1  GGCAGTTCCCGGGCCCCATCTCTCAGCCTGTTGTCACTGAGAGTT-CCAT  196
      |||||||||| ||||||||||||||| |||||||||||||||||| ||||
seq2  GGCAGTTCCCCGGCCCCATCTCTCAG-CTGTTGTCACTGAGAGTTCCCAT  182

seq1  AGCTGGTGTGTGCTTTCTGAGAAGAAATCTCAGAAAATGGAGGCAGCAGG  246
      ||||||||||||||||||||| |  |||||||| ||||||||||||||||
seq2  AGCTGGTGTGTGCTTTCTGAGGAAGAATCTCAG-AAATGGAGGCAGCAGG  231

seq1  ACCTGGAGTGAGACACTCCCTGTAGTGCGGGTCTGATGCCTGTTTAAGAG  296
      ||  | ||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTGGAAGTGAGACACT-CCTGTAGTGCGGGTCTGATGCCTGTTTAAGAG  280

seq1  GGTGGAGAGGGAATTGCTTGGTAAGAGTACCAG-AATAGTTCTTAGAAGG  345
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGTGGAGAGGGAATTGCTTGGTAAGAGTACCAGAAATAGTTCTTAGAAGG  330

seq1  TACATCCAGGCCACCAGAAGAGCCCAGCCAAATAACACTGTGAGGCCACC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCAGGCCACCAGAAGAGCCCAGCCAAATAACACTGTGAGGCCACC  380

seq1  CTT-CTACTGCCTGCACCTGTCCCTGGTGCAGGCTTGGTGGTATCTAAAA  444
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTACTGCCTGCACCTGTCCCTGGTGCAGGCTTGGTGGTATCTAAAA  430

seq1  TGGAAACCAGGGGTGTGGCATATGGAACCTTTGAAGGATGATGCAGAGTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCAGGGGTGTGGCATATGGAACCTTTGAAGGATGATGCAGAGTA  480

seq1  TGGGCACAGGTGGCATCTTCTAAGGGTCCCAGTAGGAGTTCCTGGCCCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACAGGTGGCATCTTCTAAGGGTCCCAGTAGGAGTTCCTGGCCCAG  530

seq1  CGCAGAAAGCCTGGAACACTAAAGCTCTGTCAACAGCCACTCAACTCTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGAAAGCCTGGAACACTAAAGCTCTGTCAACAGCCACTCAACTCTCT  580

seq1  CAAGCATACACAGAGAGGATTGTAGCTCTGGTCTCGTTCAGCATTTATGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATACACAGAGAGGATTGTAGCTCTGGTCTCGTTCAGCATTTATGG  630

seq1  CTTTAACTTCCGCCATTGGAACCGTCTCTTTGCCTAGATTCCAGTCTTTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTTCCGCCATTGGAACCGTCTCTTTGCCTAGATTCCAGTCTTTG  680

seq1  GCAGACCTTTTATATTAGCTTTGTGTGTGTGTGTATGTGTGTGCGCGCTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCTTTTATATTAGCTTTGTGTGTGTGTGTATGTGTGTGCGCGCTT  730

seq1  GCGCGAGCACATTTGTGTTGCACATATATATGCAAGTGCACATAGGTGTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGAGCACATTTGTGTTGCACATATATATGCAAGTGCACATAGGTGTG  780

seq1  TGTTAAGTGTGGAGACCAGAGGTTTCCTTCACATCACATTGGCAGCATCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGTGTGGAGACCAGAGGTTTCCTTCACATCACATTGGCAGCATCT  830

seq1  TCTTCAATCATTTTCTACCTTATTAACTGAGTCAGGGTCTCGTAGTGAAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAATCATTTTCTACCTTATTAACTGAGTCAGGGTCTCGTAGTGAAC  880

seq1  TCAGAACTCGCTGTTTCAGCTAGACCGCCTGGCTAACAAACTCCAGGGAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACTCGCTGTTTCAGCTAGACCGCCTGGCTAACAAACTCCAGGGAT  930

seq1  CCTCCAGTCTCCACCTCCGCAGGGCTGGGCTCACAGGTAGGCCACCAGGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGTCTCCACCTCCGCAGGGCTGGGCTCACAGGTAGGCCACCAGGT  980

seq1  CAGGCTTTTTTATGTAGGTTCTGGGAAATCAAACCTTGGCTTATGAAGAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTTTTATGTAGGTTCTGGGAAATCAAACCTTGGCTTATGAAGAC  1030

seq1  TAGTGAGCCATCTTCCCAGACCTTCTGGGTCTTTTCCAACCCCATTCTCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGCCATCTTCCCAGACCTTCTGGGTCTTTTCCAACCCCATTCTCT  1080

seq1  TCCTGTCTCCTCCAGCTTTCCTCTACTTGCCAAGGATGAGCTGATTAAAG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTCCTCCAGCTTTCCTCTACTTGCCAAGGATGAGCTGATTAAAG  1130

seq1  AGGAAATACTTCCAGGTGAATTC  1167
      |||||||||||||||||||||||
seq2  AGGAAATACTTCCAGGTGAATTC  1153