BAC Information

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BAC

Clone NameB6Ng01-272O13
Chromosome18 (Build37)
Map Location 17,067,146 - 17,195,614
singlet/doubletdoublet
Overlap gene1700001G01Rik
Upstream geneEG225228, LOC100040202, Ppia-ps18_172.1, EG665509, Cdh2, LOC665519
Downstream gene4921533I20Rik, LOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272O13.bB6Ng01-272O13.g
ACCGA074617GA074618
length9891,001
definitionB6Ng01-272O13.b B6Ng01-272O13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,195,041 - 17,195,614)(17,067,146 - 17,067,881)
sequence
gaattctcctgcttcagcatccaaaggtatataatttcagatgcatctca
atgtgctttttgttgcttatttcccccaactttttattggttcattgtga
atttcatatcacgcactccaatcctaatcacttatctccccctcccattg
tacccaccctctaccctggctaccttccctgcaacagagggaaaaaaatc
tcattgtgaaagctgtagtgtgtcacagtataccctttggtccacatttt
tttgtttgcaaatattcattgcaatgagtccttggtctggtataatgtct
ctgcccctaccatctatttctattggaacctcactaggacacctctctga
tatcttgttattgccatgtgtcatgagatcctgcagttagttttgtatct
ataggacttgaccggccccttcaatcactccagtagtccagcagttgggt
agagatgggcatcagtcaacttaaagccctgggtctgagcctgagagtta
tctgagctgtacagtctatgggttctcctgctttcagaccctcaagacca
gcacaccagcaacccctgctaccagggcaaaccataccctgctgcacatg
tgaggtgcagtgcttactctctcaagtgttgcagccagtgagggacatgg
acaatgcactcactctaaagacccccagagtcagctcttttgactgccat
agatatagaggtacaagggaggggaggaagacatcttaccatcttctgtg
ccaccacccagcagacaagaagtagggacagctttcccacactttttctc
tagggttctgctcacctgaaaccccttcatccacagtcatcttgattgtg
ctcctcaggaaggggcagacacaattctcctgctcttgtgatccagtcag
gacaacttcaccacctatagccagtagtgagggaaaagggagtggaggag
agctctccttcagctatgctaccacatagcatacagaag

gaattctcctcacacaaatccattcttgggccatattgcaatgataagga
acttagaagaaaaacacagtgcaggaagaatgattcagctgaaatacaaa
gtaaaaccaaaaccaatccaactaaccaaccaaccaaccaaccaaccaac
caaccaaccaaacaaacaaacaaacaaacaagagaaaacaagacttggtg
atcttgagaaatttcaggttctcgttataaaatgtaagaaattaattata
caatttttaaaaatttgttttctttttttttctgactgctcttttttaca
tatactttttattaggtattttcctcatttacatttccaatgctatgaac
atagtggagcatgtgtccttcttagatgtaccggttgggacatctggata
tatgcccaggagaggtattgctggatcctccggtagtactatgtccaatt
ttctgaggaaccgccagactgatttccagagtggttgtacaagcctgcaa
tcccaccaacaatggaggagtgttcctctttctccacatcctcaccagca
tctgctgtcacctgaattttttatcttagccattctgactggtgtgaggt
ggaatctcagggttgttttgatttgcatttccctgatgattaaggatgtt
gaacattttttcaggtgcttctctgccattcggtattcctcaggtgagaa
ttctttgttcagttctgagccccatttttaatggggttatttgactttct
gaagtccaccttcttgagttctttatatatgttggatattagacccctat
ctgatttaggataggtaaagatccctttcccaatctgttggtggtctttt
tgtcttattgacggtgtctttttgccttgcagaagctttggagtttcata
aggtcccatttgtcaattctcgatcttacagcaccaagccattgctcttt
ctgttcaggaatttttcccctgtgcccatatcttcaggcttttccccact
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17195041_17195614
seq2: B6Ng01-272O13.b_46_619 (reverse)

seq1  TGGTAGCAGGGGTTGCTGGTGTGCTGGTCTTGAGGGTCTGAAAGCAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCAGGGGTTGCTGGTGTGCTGGTCTTGAGGGTCTGAAAGCAGGAG  50

seq1  AACCCATAGACTGTACAGCTCAGATAACTCTCAGGCTCAGACCCAGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATAGACTGTACAGCTCAGATAACTCTCAGGCTCAGACCCAGGGCT  100

seq1  TTAAGTTGACTGATGCCCATCTCTACCCAACTGCTGGACTACTGGAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTGACTGATGCCCATCTCTACCCAACTGCTGGACTACTGGAGTGA  150

seq1  TTGAAGGGGCCGGTCAAGTCCTATAGATACAAAACTAACTGCAGGATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGGGCCGGTCAAGTCCTATAGATACAAAACTAACTGCAGGATCTC  200

seq1  ATGACACATGGCAATAACAAGATATCAGAGAGGTGTCCTAGTGAGGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACATGGCAATAACAAGATATCAGAGAGGTGTCCTAGTGAGGTTCC  250

seq1  AATAGAAATAGATGGTAGGGGCAGAGACATTATACCAGACCAAGGACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAATAGATGGTAGGGGCAGAGACATTATACCAGACCAAGGACTCA  300

seq1  TTGCAATGAATATTTGCAAACAAAAAAATGTGGACCAAAGGGTATACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATGAATATTTGCAAACAAAAAAATGTGGACCAAAGGGTATACTGT  350

seq1  GACACACTACAGCTTTCACAATGAGATTTTTTTCCCTCTGTTGCAGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACTACAGCTTTCACAATGAGATTTTTTTCCCTCTGTTGCAGGGAA  400

seq1  GGTAGCCAGGGTAGAGGGTGGGTACAATGGGAGGGGGAGATAAGTGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCCAGGGTAGAGGGTGGGTACAATGGGAGGGGGAGATAAGTGATTA  450

seq1  GGATTGGAGTGCGTGATATGAAATTCACAATGAACCAATAAAAAGTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGAGTGCGTGATATGAAATTCACAATGAACCAATAAAAAGTTGGG  500

seq1  GGAAATAAGCAACAAAAAGCACATTGAGATGCATCTGAAATTATATACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAGCAACAAAAAGCACATTGAGATGCATCTGAAATTATATACCT  550

seq1  TTGGATGCTGAAGCAGGAGAATTC  574
      ||||||||||||||||||||||||
seq2  TTGGATGCTGAAGCAGGAGAATTC  574


seq1: chr18_17067146_17067881
seq2: B6Ng01-272O13.g_68_803

seq1  GAATTCTCCTCACACAAATCCATTCTTGGGCCATATTGCAATGATAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCACACAAATCCATTCTTGGGCCATATTGCAATGATAAGGA  50

seq1  ACTTAGAAGAAAAACACAGTGCAGGAAGAATGATTCAGCTGAAATACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAAGAAAAACACAGTGCAGGAAGAATGATTCAGCTGAAATACAAA  100

seq1  GTAAAACCAAAACCAATCCAACTAACCAACCAACCAACCAACCAACCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACCAAAACCAATCCAACTAACCAACCAACCAACCAACCAACCAAC  150

seq1  CAACCAACCAAACAAACAAACAAACAAACAAGAGAAAACAAGACTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAACCAAACAAACAAACAAACAAACAAGAGAAAACAAGACTTGGTG  200

seq1  ATCTTGAGAAATTTCAGGTTCTCGTTATAAAATGTAAGAAATTAATTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAGAAATTTCAGGTTCTCGTTATAAAATGTAAGAAATTAATTATA  250

seq1  CAATTTTTAAAAATTTGTTTTCTTTTTTTTTCTGACTGCTCTTTTTTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTAAAAATTTGTTTTCTTTTTTTTTCTGACTGCTCTTTTTTACA  300

seq1  TATACTTTTTATTAGGTATTTTCCTCATTTACATTTCCAATGCTATGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTTTATTAGGTATTTTCCTCATTTACATTTCCAATGCTATGAAC  350

seq1  ATAGTGGAGCATGTGTCCTTCTTAGATGTACCGGTTGGGACATCTGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGAGCATGTGTCCTTCTTAGATGTACCGGTTGGGACATCTGGATA  400

seq1  TATGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATT  450

seq1  TTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCCTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCCTGCAA  500

seq1  TCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCACCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCACCAGCA  550

seq1  TCTGCTGTCACCTGAATTTTTTATCTTAGCCATTCTGACTGGTGTGAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTCACCTGAATTTTTTATCTTAGCCATTCTGACTGGTGTGAGGT  600

seq1  GGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTT  650

seq1  GAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAA  700

seq1  TTCTTTGTTCAGTTCTGAGCCCCATTTTTAATGGGG  736
      ||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTTCAGTTCTGAGCCCCATTTTTAATGGGG  736


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