BAC Information

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BAC

Clone NameB6Ng01-274A12
Chromosome18 (Build37)
Map Location 18,030,659 - 18,210,276
singlet/doubletdoublet
Overlap genenone
Upstream gene1700001G01Rik, 4921533I20Rik, LOC100040647
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274A12.bB6Ng01-274A12.g
ACCGA075442GA075443
length1,0981,126
definitionB6Ng01-274A12.b B6Ng01-274A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,209,256 - 18,210,276)(18,030,659 - 18,031,791)
sequence
ggaattcttttgtgctattaatcatttaccacatagcaatgtatatggca
aaaatgaaaacaaacttgtgtttcaagttgaacacacaaagttagagatt
agaatctaggattcatatatgagatccatatgttgtatttacttttctag
gcttgagttacttcatgaaatttggttttccaaaaccagactttagaacc
atgttaatggagtggagatcgtatagtataagtcaaacaagaggaataga
tgatttactctgtttggaaaggcttcagcagacataggcatgggagcatg
agaaaaataggatgttaagtaaagagttaatacaaatgaaaaggatatga
aagtctattctacaataaaagtatactctatcataacccatcttaacaaa
aacatttaggtcataagatacatgaaaattcaagaagggttattatacta
agggcaaaagattaagaatgtatgagatgatttttggcagagaggagtgg
ttagtggttgaaaaaggatgtatgaaaaatgcttaacaaatctaactagt
tatcaaaatagtttaactaaaaccccacaaaattgaatatgtctgaatgc
atgaaaaatgttgctcccaaaaacataaatgattaaaagtcacagtaata
gtcatagaatactgcactctgacttagttcagagaggccccacaagcctc
taaaatatcacaggcgttagtcacttaccacaactacaaaataaggccct
actattaaagatactatgtactttagctatagtacataaaaaccaattcc
aaatcgattgggaacctcctccctaaaggctagcttccttatgctggtag
atagatggggataaaggaaatcggaggtattaccaaacagtgcacttttc
atgtttcagtactggacacagagagagatgagcttacaaggcataataat
tattcaattgctataatacaactaactgcccttgtactggcctgcctcca
gaaaagagaattctgtgccctatgctgtatcccttgtcaaaagcccatgt
ctagacagccacagccctagaacttgcttattgtattttttaaatgtt
gaattcaggagatgccttacaaattctcaaatgaagttgaaaaaactgaa
taacatctttattttcagtaaaaacaagagaggatatttcagaagagtca
agccaatgtctaaggcaatatatcatggccaaaacttgttcctttctgat
tcttagtgacagtattacagatatgtattatcagatatcggtgggatcta
aaagttgatgagaaacattttcatataagttctgcatgactaagttgaat
aagtataattatacatttgtgatattaaagtagaaatatttaactaaaaa
aatgtttgccctatactatttattaactaacattaaatttataacctcac
tgttgtctccgtgtttgacttgctaagataacactgtctcctagttacat
tttcttgaaagtgaatgacaaccttatccttctctttaccgtttgtcttt
tcatcccctattttatcattcttcacatgacctttaccatcttccctaga
tcactggatattttttccagtagacattctctctttcatttttctagggt
agatactagattttttttttcttcacttctttgacatttttcttctttac
tttgtttcactgaaatttttcatccctactcaaagggcttagtctagaat
aatgaaaacattcaagtattactgatgtcttaagttttaccatctcaact
attattgccagtcttaagaatgttgctatttgggtgtctccctgtatttt
ctgctttatatagttatattttttcttactttttaccatacatcgtataa
gtagcaagttatagttaacataaataatgcttaatcacttccatgtttcc
ttggtttaatgaactaccacatatattctactaacatatcctgtctcttt
ctgacagctataaacaagatttgttgcccaaaactttctgtcaaccaatg
ggagatccacaggatgaagaatggtagcctactgctacaattctttttgt
cagagccaggtccaatcattaacaattcagtgaacttgaaagcaatctct
agcttaagtaccgtgggtacttaccatgaacaatatatggtctgcctagt
actgaatccataaataaagtggacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_18209256_18210276
seq2: B6Ng01-274A12.b_118_1138 (reverse)

seq1  ACCATTTAAAAAAATAACAAT-AGCAAGTTCTAGGGCCTGTGGCTGTCCT  49
      | |||||||||||   ||||| |||||||||||||| |||||||||| ||
seq2  AACATTTAAAAAA--TACAATAAGCAAGTTCTAGGG-CTGTGGCTGT-CT  46

seq1  AGACATGGGCTTTTGACAA-GGATACAGCAATAGGCACAGAATTCTCTTT  98
      ||||||||||||||||||| ||||||||||   |||||||||||||||||
seq2  AGACATGGGCTTTTGACAAGGGATACAGCATAGGGCACAGAATTCTCTTT  96

seq1  TCTGGA-GCAGGCCAGTACAAAGGCAGTTAGTTGTATTATAGCAATTGAA  147
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTGGAGGCAGGCCAGTACAAGGGCAGTTAGTTGTATTATAGCAATTGAA  146

seq1  TAATTATTATGCC-TGTAAGCTCATCTCTCTCTGTGTCCAGTACTGAAAC  196
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAATTATTATGCCTTGTAAGCTCATCTCTCTCTGTGTCCAGTACTGAAAC  196

seq1  ATGAAAAGTGCACTGTTTGGTAATACCTCCGATTTCCTTTATCCCCATCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGTGCACTGTTTGGTAATACCTCCGATTTCCTTTATCCCCATCT  246

seq1  ATCTACCAGCATAAGGAAGCTAGCCTTTAGGGAGGAGGTTCCCAATCGAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCAGCATAAGGAAGCTAGCCTTTAGGGAGGAGGTTCCCAATCGAT  296

seq1  TTGGAATTGGTTTTTATGTACTATAGCTAAAGTACATAGTATCTTTAATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATTGGTTTTTATGTACTATAGCTAAAGTACATAGTATCTTTAATA  346

seq1  GTAGGGCCTTATTTTGTAGTTGTGGTAAGTGACTAACGCCTGTGATATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCCTTATTTTGTAGTTGTGGTAAGTGACTAACGCCTGTGATATTT  396

seq1  TAGAGGCTTGTGGGGCCTCTCTGAACTAAGTCAGAGTGCAGTATTCTATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCTTGTGGGGCCTCTCTGAACTAAGTCAGAGTGCAGTATTCTATG  446

seq1  ACTATTACTGTGACTTTTAATCATTTATGTTTTTGGGAGCAACATTTTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTACTGTGACTTTTAATCATTTATGTTTTTGGGAGCAACATTTTTC  496

seq1  ATGCATTCAGACATATTCAATTTTGTGGGGTTTTAGTTAAACTATTTTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTCAGACATATTCAATTTTGTGGGGTTTTAGTTAAACTATTTTGA  546

seq1  TAACTAGTTAGATTTGTTAAGCATTTTTCATACATCCTTTTTCAACCACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGTTAGATTTGTTAAGCATTTTTCATACATCCTTTTTCAACCACT  596

seq1  AACCACTCCTCTCTGCCAAAAATCATCTCATACATTCTTAATCTTTTGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTCCTCTCTGCCAAAAATCATCTCATACATTCTTAATCTTTTGCC  646

seq1  CTTAGTATAATAACCCTTCTTGAATTTTCATGTATCTTATGACCTAAATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTATAATAACCCTTCTTGAATTTTCATGTATCTTATGACCTAAATG  696

seq1  TTTTTGTTAAGATGGGTTATGATAGAGTATACTTTTATTGTAGAATAGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTAAGATGGGTTATGATAGAGTATACTTTTATTGTAGAATAGAC  746

seq1  TTTCATATCCTTTTCATTTGTATTAACTCTTTACTTAACATCCTATTTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATCCTTTTCATTTGTATTAACTCTTTACTTAACATCCTATTTTT  796

seq1  CTCATGCTCCCATGCCTATGTCTGCTGAAGCCTTTCCAAACAGAGTAAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCTCCCATGCCTATGTCTGCTGAAGCCTTTCCAAACAGAGTAAAT  846

seq1  CATCTATTCCTCTTGTTTGACTTATACTATACGATCTCCACTCCATTAAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATTCCTCTTGTTTGACTTATACTATACGATCTCCACTCCATTAAC  896

seq1  ATGGTTCTAAAGTCTGGTTTTGGAAAACCAAATTTCATGAAGTAACTCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCTAAAGTCTGGTTTTGGAAAACCAAATTTCATGAAGTAACTCAA  946

seq1  GCCTAGAAAAGTAAATACAACATATGGATCTCATATATGAATCCTAGATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAAAAGTAAATACAACATATGGATCTCATATATGAATCCTAGATT  996

seq1  CTAATCTCTAACTTTGTGTGTTCAA  1021
      |||||||||||||||||||||||||
seq2  CTAATCTCTAACTTTGTGTGTTCAA  1021

seq1: chr18_18030659_18031791
seq2: B6Ng01-274A12.g_66_1191

seq1  GAATTCAGGAGATGCCTTACAAATTCTCAAATGAAGTTGAAAAAACTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGATGCCTTACAAATTCTCAAATGAAGTTGAAAAAACTGAA  50

seq1  TAACATCTTTATTTTCAGTAAAAACAAGAGAGGATATTTCAGAAGAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCTTTATTTTCAGTAAAAACAAGAGAGGATATTTCAGAAGAGTCA  100

seq1  AGCCAATGTCTAAGGCAATATATCATGGCCAAAACTTGTTCCTTTCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATGTCTAAGGCAATATATCATGGCCAAAACTTGTTCCTTTCTGAT  150

seq1  TCTTAGTGACAGTATTACAGATATGTATTATCAGATATCGGTGGGATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTGACAGTATTACAGATATGTATTATCAGATATCGGTGGGATCTA  200

seq1  AAAGTTGATGAGAAACATTTTCATATAAGTTCTGCATGACTAAGTTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGATGAGAAACATTTTCATATAAGTTCTGCATGACTAAGTTGAAT  250

seq1  AAGTATAATTATACATTTGTGATATTAAAGTAGAAATATTTAACTAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAATTATACATTTGTGATATTAAAGTAGAAATATTTAACTAAAAA  300

seq1  AATGTTTGCCCTATACTATTTATTAACTAACATTAAATTTATAACCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGCCCTATACTATTTATTAACTAACATTAAATTTATAACCTCAC  350

seq1  TGTTGTCTCCGTGTTTGACTTGCTAAGATAACACTGTCTCCTAGTTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTCCGTGTTTGACTTGCTAAGATAACACTGTCTCCTAGTTACAT  400

seq1  TTTCTTGAAAGTGAATGACAACCTTATCCTTCTCTTTACCGTTTGTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGAAAGTGAATGACAACCTTATCCTTCTCTTTACCGTTTGTCTTT  450

seq1  TCATCCCCTATTTTATCATTCTTCACATGACCTTTACCATCTTCCCTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCCTATTTTATCATTCTTCACATGACCTTTACCATCTTCCCTAGA  500

seq1  TCACTGGATATTTTTTCCAGTAGACATTCTCTCTTTCATTTTTCTAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGATATTTTTTCCAGTAGACATTCTCTCTTTCATTTTTCTAGGGT  550

seq1  AGATACTAGATTTTTTTTTTCTTCACTTCTTTGACATTTTTCTTCTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTAGATTTTTTTTTTCTTCACTTCTTTGACATTTTTCTTCTTTAC  600

seq1  TTTGTTTCACTGAAATTTTTCATCCCTACTCAAAGGGCTTAGTCTAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCACTGAAATTTTTCATCCCTACTCAAAGGGCTTAGTCTAGAAT  650

seq1  AATGAAAACATTCAAGTATTACTGATGTCTTAAGTTTTACCATCTCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAACATTCAAGTATTACTGATGTCTTAAGTTTTACCATCTCAACT  700

seq1  ATTATTGCCAGTCTTAAGAATGTTGCTATTTGGGTGTCTCCCTGTATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGCCAGTCTTAAGAATGTTGCTATTTGGGTGTCTCCCTGTATTTT  750

seq1  CTGCTTTATATAGTTATATTTTTTCTTACTTTTTACCATACATCGTATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTATATAGTTATATTTTTTCTTACTTTTTACCATACATCGTATAA  800

seq1  GTAGCAAGTTATAGTTAACATAAATAATGCTTAATCACTTCCATGTTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAGTTATAGTTAACATAAATAATGCTTAATCACTTCCATGTTTCC  850

seq1  TTGGTTTAATGAACTACCACATATATTCTACTAACATATCCTGTCTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTAATGAACTACCACATATATTCTACTAACATATCCTGTCTCTTT  900

seq1  CTGACAGCTATAAACAAGATTTGTTGCCAAAAACTTTCTGTCAACCAATG  950
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  CTGACAGCTATAAACAAGATTTGTTGCCCAAAACTTTCTGTCAACCAAT-  949

seq1  GGGAGATCCACAGGATGAAGAATGGTAGCCTACTGCTACAATTC-TTTTG  999
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGGAGATCCACAGGATGAAGAATGGTAGCCTACTGCTACAATTCTTTTTG  999

seq1  TCAAGAGCCAGGTTCCAATCATTAACAATTTCAGTGAACTTGAAAGCCAA  1049
      || ||||||||| ||||||||||||||| ||||||||||||||||||  |
seq2  TC-AGAGCCAGG-TCCAATCATTAACAA-TTCAGTGAACTTGAAAGC--A  1044

seq1  TTCTCTAGCTTAAGGTACCCGTGGGTACTTACAATG-ACAATATATTGGT  1098
       |||||||||||| ||| |||||||||||||| ||| |||||||| ||||
seq2  ATCTCTAGCTTAA-GTA-CCGTGGGTACTTACCATGAACAATATA-TGGT  1091

seq1  CTTGGCTTAGTACTTGATTCATAA--TAAGTGGACCT  1133
      ||  || |||||||  || |||||   ||||||||||
seq2  CT--GCCTAGTACTGAATCCATAAATAAAGTGGACCT  1126