BAC Information

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BAC

Clone NameB6Ng01-274E20
Chromosome18 (Build37)
Map Location 14,957,601 - 15,091,917
singlet/doubletdoublet
Overlap geneTaf4b, LOC669965
Upstream geneZfp521, LOC100040094, LOC100040103, LOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8
Downstream geneKctd1, EG622268, LOC100040151, Aqp4, LOC665473, Chst9, LOC670012, LOC100040551
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274E20.bB6Ng01-274E20.g
ACCGA075639GA075640
length1,1171,150
definitionB6Ng01-274E20.b B6Ng01-274E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,957,601 - 14,958,717)(15,090,766 - 15,091,917)
sequence
aattaatgaagaaagtaacagtggcgcctgttaaaaatttgacacagata
ggaactactgtggcaaccactgcctccagtacttcctcaggacaagtaag
tggggtgtgtgtgtgtgtgtgtgtccccactagcccactaactttttcag
ttatttcttgccagatattttagcatctatgagacgctgaaggcatataa
tatatgatgttgtttatcagacagtgaactattaatgcagaaataagaaa
acatggtgttgccgggcagtggtggcgcatgcctttaatcccagcactcg
ggaggcagaggcaggcggatttctgagtttgaggccagcctggtctacag
agtgagttccaggacagccagggctacaaagagaaaccctgtgccaaaaa
aaaaaaaaaagaaaaagaaaaagaaaaagaaaaaaagaaaaagaaacaaa
aatggtgtctatcattattagtcattgcataaatccattaaagtaatata
aatacaccaaataaccgtgtattacagtctccagagggaggtgctaaaat
agaatttggataggttatttgttaggagtcaatatgaagagaacaagagt
aagtttaagctagactcaggattagaaaagttttattcagccaacctact
agagaactttgaaatatatgtccctagtcaccactgttagtcagcacact
cttctgtgctttttttggactcttcttggaaaattatatctttgtccaag
gtctctttgcaacagaggttaactgaaagttatccagtagcattctagta
gccaaaactctctttacaacagttcattgaaatctacatcttgtctatat
tcttcttataatgtattatacaaaagtgttctgtgatgctggtgggcttc
ttccctggagaaaacaaagaagttaaaaaggatagtcagtacttccttgt
ccaatcttggttcttggcagttagttacctactagtaacctttcctgtct
ttgagatctctgtggactgtatgttttctgcccctatctggggtttctgt
ttttctccacttggtacagaatagcacagaactgatatttggaatgatag
agttgttgactcatgat
gaattctaggccaacctcagacatagtaagttcaaggcaaccataaatta
catgagacccatctcttgacatttttttaatgaggcaaataacttcagac
aagaaattagcaatggtatgcaagaaaagtcaattcactcacttctcatc
cccaacaaacccttttgggagatgcttgccatttgatccagtcttcttgt
gaacacactgccatgaattcccatctgtgtccttggccctggatgagact
cttggaagctctctagagtgtgcttgtcacccagccttctgtcccatgct
ctctactctagaagctgctctcaatcatgctgactcaggctggccattac
ttgacctcatgccatggccacactggcagaacatataacaatggacttct
cagttactgtaatgagcaatgtgaagggaagaaaaacactaggattttag
atatgcatatcggagtccatgctgatcctgagcagtctggaagggagagt
ccttccctgcagatataccaactggtctgtaatgagctattccaagagat
aatgaccaaagaaaccccctggagaaaagaatttatcattctttaagtct
gactatttcagagatgacatgagcctgagggacaacccaagaaccactag
cctggttttgacagagattcactaaaaagcaaactcactttctgctattg
ctgttcacaagccattaccctaggaagggcgagctcccacacacacttct
cagtgtttcaccctgggtttctgaaagtggggcaggaggtaccttgagcc
atggacatttgaagcaaacagggaaagcacagctcccagatccagggatc
ccgaaagccactaaagtaaagccacatcgttgtcagagttaaacagcagg
atgcataagatgcatagccccaagcagcaggtgacaggctcatgttactc
caacgggtgtacttgttactccaccataatgtcaccatcctgtgtgagcc
actagcccttgggatgtcaccagaggccccccccccccccactttgatca
gactgagatcttctgtgaatttcaaggtcaccattgtcatgtaagacttt
tcaaggatgagtttatagctttacagttcttcttttaatccagtgttggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_14957601_14958717
seq2: B6Ng01-274E20.b_55_1171

seq1  AATTAATGAAGAAAGTAACAGTGGCGCCTGTTAAAAATTTGACACAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGAAGAAAGTAACAGTGGCGCCTGTTAAAAATTTGACACAGATA  50

seq1  GGAACTACTGTGGCAACCACTGCCTCCAGTACTTCCTCAGGACAAGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTACTGTGGCAACCACTGCCTCCAGTACTTCCTCAGGACAAGTAAG  100

seq1  TGGGGTGTGTGTGTGTGTGTGTGTCCCCACTAGCCCACTAACTTTTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTGTGTGTGTGTGTGTGTCCCCACTAGCCCACTAACTTTTTCAG  150

seq1  TTATTTCTTGCCAGATATTTTAGCATCTATGAGACGCTGAAGGCATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTGCCAGATATTTTAGCATCTATGAGACGCTGAAGGCATATAA  200

seq1  TATATGATGTTGTTTATCAGACAGTGAACTATTAATGCAGAAATAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGATGTTGTTTATCAGACAGTGAACTATTAATGCAGAAATAAGAAA  250

seq1  ACATGGTGTTGCCGGGCAGTGGTGGCGCATGCCTTTAATCCCAGCACTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGTTGCCGGGCAGTGGTGGCGCATGCCTTTAATCCCAGCACTCG  300

seq1  GGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAG  350

seq1  AGTGAGTTCCAGGACAGCCAGGGCTACAAAGAGAAACCCTGTGCCAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTCCAGGACAGCCAGGGCTACAAAGAGAAACCCTGTGCCAAAAA  400

seq1  AAAAAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAAAGAAAAAGAAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAAAGAAAAAGAAACAAA  450

seq1  AATGGTGTCTATCATTATTAGTCATTGCATAAATCCATTAAAGTAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGTCTATCATTATTAGTCATTGCATAAATCCATTAAAGTAATATA  500

seq1  AATACACCAAATAACCGTGTATTACAGTCTCCAGAGGGAGGTGCTAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACCAAATAACCGTGTATTACAGTCTCCAGAGGGAGGTGCTAAAAT  550

seq1  AGAATTTGGATAGGTTATTTGTTAGGAGTCAATATGAAGAGAACAAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGGATAGGTTATTTGTTAGGAGTCAATATGAAGAGAACAAGAGT  600

seq1  AAGTTTAAGCTAGACTCAGGATTAGAAAAGTTTTATTCAGCCAACCTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAAGCTAGACTCAGGATTAGAAAAGTTTTATTCAGCCAACCTACT  650

seq1  AGAGAACTTTGAAATATATGTCCCTAGTCACCACTGTTAGTCAGCACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTTTGAAATATATGTCCCTAGTCACCACTGTTAGTCAGCACACT  700

seq1  CTTCTGTGCTTTTTTTGGACTCTTCTTGGAAAATTATATCTTTGTCCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGCTTTTTTTGGACTCTTCTTGGAAAATTATATCTTTGTCCAAG  750

seq1  GTCTCTTTGCAACAGAGGTTAACTGAAAGTTATCCAGTAGCATTCTAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTGCAACAGAGGTTAACTGAAAGTTATCCAGTAGCATTCTAGTA  800

seq1  GCCAAAACTCTCTTTACAACAGTTCATTGAAATCTACATCTTGTCTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAACTCTCTTTACAACAGTTCATTGAAATCTACATCTTGTCTATAT  850

seq1  TCTTCTTAT-ATGTATTATACAAAAGTGTTCTGTGATGCTGGTGGGCTTC  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTATAATGTATTATACAAAAGTGTTCTGTGATGCTGGTGGGCTTC  900

seq1  TTCCCTGGAG-AAACAAAGAAGTT-AAAAGGATAGTCAGTACTCCTTTGT  947
      |||||||||| ||||||||||||| |||||||||||||||||| | ||||
seq2  TTCCCTGGAGAAAACAAAGAAGTTAAAAAGGATAGTCAGTACTTCCTTGT  950

seq1  CC-ATCTTGG-TCTTGGCAGTTAGTTACCTACTAGTAAACTTTCCTGTCT  995
      || ||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  CCAATCTTGGTTCTTGGCAGTTAGTTACCTACTAGTAACCTTTCCTGTCT  1000

seq1  TTGAGATCTCTGTGGACTGTATG-TTTCTGCCCCTATCTTGGGTTTTCTG  1044
      ||||||||||||||||||||||| |||||||||||||| |||| ||||||
seq2  TTGAGATCTCTGTGGACTGTATGTTTTCTGCCCCTATC-TGGGGTTTCTG  1049

seq1  TTTTTCTCCACTTGTAACAGAATAGCACAG-ACTGAGTATTTTGTAGTGA  1093
      ||||||||||||||  |||||||||||||| ||||| || |||| | || 
seq2  TTTTTCTCCACTTGGTACAGAATAGCACAGAACTGA-TA-TTTGGAATG-  1096

seq1  ATAGAAGTTGGTTTGACTCATGAT  1117
      |||| |||||  ||||||||||||
seq2  ATAG-AGTTG--TTGACTCATGAT  1117

seq1: chr18_15090766_15091917
seq2: B6Ng01-274E20.g_63_1212 (reverse)

seq1  CCCAACACTGGGATAAAAAGAAGAAACTGT-AAGCTATAAACCTCATCCC  49
      ||||||||| |||| |||||||| |||||| |||||||||| ||||||| 
seq2  CCCAACACT-GGATTAAAAGAAG-AACTGTAAAGCTATAAA-CTCATCC-  46

seq1  TTTGAAAAACCCTACATGACAATGGTGAACTTGAATTCAACAGAAGATCC  99
       |||||||  | |||||||||||||||| |||||| |  ||||||||| |
seq2  -TTGAAAAGTCTTACATGACAATGGTGACCTTGAAATTCACAGAAGAT-C  94

seq1  TCAGTCCTGGATCAA---GGTGGGGGGGGGGGCCTCTGGTGACAT-CCAA  145
      ||||||   ||||||   || |||||||||||||||||||||||| ||||
seq2  TCAGTC--TGATCAAAGTGGGGGGGGGGGGGGCCTCTGGTGACATCCCAA  142

seq1  GGGCTAGTGGCTCACACA-GAT-GTGACATTATGGTGGAGTAACAAGTAC  193
      |||||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  GGGCTAGTGGCTCACACAGGATGGTGACATTATGGTGGAGTAACAAGTAC  192

seq1  ACCCG-TGGAGTAACATGAGCCTGTCACCTTGCTGCTTGGGGCTATGCAT  242
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACCCGTTGGAGTAACATGAGCCTGTCACC-TGCTGCTTGGGGCTATGCAT  241

seq1  CCTTATGCATCCTGCTGTTTAACTCTGACAACGATGTGGCTTTACTTTAG  292
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTTATGCATCCTGCTGTTTAACTCTGACAACGATGTGGCTTTACTTTAG  290

seq1  TGGCCTTCGGGATCCCTGGATCTGGGAGCTGTGCTTTCCCTGTTTGCTTC  342
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCGGGATCCCTGGATCTGGGAGCTGTGCTTTCCCTGTTTGCTTC  340

seq1  AAATGTCCATGGCTCAAGGTACCTCCTGCCCCACTTTCAGAAACCCAGGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCATGGCTCAAGGTACCTCCTGCCCCACTTTCAGAAACCCAGGG  390

seq1  TGAAACACTGAGAAGTGTGTGTGGGAGCTCGCCCTTCCTAGGGTAATGGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACACTGAGAAGTGTGTGTGGGAGCTCGCCCTTCCTAGGGTAATGGC  440

seq1  TTGTGAACAGCAATAGCAGAAAGTGAGTTTGCTTTTTAGTGAATCTCTGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACAGCAATAGCAGAAAGTGAGTTTGCTTTTTAGTGAATCTCTGT  490

seq1  CAAAACCAGGCTAGTGGTTCTTGGGTTGTCCCTCAGGCTCATGTCATCTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCAGGCTAGTGGTTCTTGGGTTGTCCCTCAGGCTCATGTCATCTC  540

seq1  TGAAATAGTCAGACTTAAAGAATGATAAATTCTTTTCTCCAGGGGGTTTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGTCAGACTTAAAGAATGATAAATTCTTTTCTCCAGGGGGTTTC  590

seq1  TTTGGTCATTATCTCTTGGAATAGCTCATTACAGACCAGTTGGTATATCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCATTATCTCTTGGAATAGCTCATTACAGACCAGTTGGTATATCT  640

seq1  GCAGGGAAGGACTCTCCCTTCCAGACTGCTCAGGATCAGCATGGACTCCG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAAGGACTCTCCCTTCCAGACTGCTCAGGATCAGCATGGACTCCG  690

seq1  ATATGCATATCTAAAATCCTAGTGTTTTTCTTCCCTTCACATTGCTCATT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATATCTAAAATCCTAGTGTTTTTCTTCCCTTCACATTGCTCATT  740

seq1  ACAGTAACTGAGAAGTCCATTGTTATATGTTCTGCCAGTGTGGCCATGGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAACTGAGAAGTCCATTGTTATATGTTCTGCCAGTGTGGCCATGGC  790

seq1  ATGAGGTCAAGTAATGGCCAGCCTGAGTCAGCATGATTGAGAGCAGCTTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTCAAGTAATGGCCAGCCTGAGTCAGCATGATTGAGAGCAGCTTC  840

seq1  TAGAGTAGAGAGCATGGGACAGAAGGCTGGGTGACAAGCACACTCTAGAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTAGAGAGCATGGGACAGAAGGCTGGGTGACAAGCACACTCTAGAG  890

seq1  AGCTTCCAAGAGTCTCATCCAGGGCCAAGGACACAGATGGGAATTCATGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCAAGAGTCTCATCCAGGGCCAAGGACACAGATGGGAATTCATGG  940

seq1  CAGTGTGTTCACAAGAAGACTGGATCAAATGGCAAGCATCTCCCAAAAGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTTCACAAGAAGACTGGATCAAATGGCAAGCATCTCCCAAAAGG  990

seq1  GTTTGTTGGGGATGAGAAGTGAGTGAATTGACTTTTCTTGCATACCATTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTGGGGATGAGAAGTGAGTGAATTGACTTTTCTTGCATACCATTG  1040

seq1  CTAATTTCTTGTCTGAAGTTATTTGCCTCATTAAAAAAATGTCAAGAGAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTCTTGTCTGAAGTTATTTGCCTCATTAAAAAAATGTCAAGAGAT  1090

seq1  GGGTCTCATGTAATTTATGGTTGCCTTGAACTTACTATGTCTGAGGTTGG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCATGTAATTTATGGTTGCCTTGAACTTACTATGTCTGAGGTTGG  1140

seq1  CCTAGAATTC  1152
      ||||||||||
seq2  CCTAGAATTC  1150