BAC Information

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BAC

Clone NameB6Ng01-277K12
Chromosome18 (Build37)
Map Location 24,119,105 - 24,265,111
singlet/doubletdoublet
Overlap geneZfp397, C230097I24Rik, Zfp35, Zfp191, D030070L09Rik
Upstream geneNol4, LOC100040579, LOC665797, Dtna, Mapre2, EG665813, LOC100040623
Downstream geneGalnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos, Fhod3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277K12.bB6Ng01-277K12.g
ACCGA078118GA078119
length1,1181,170
definitionB6Ng01-277K12.b B6Ng01-277K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,263,997 - 24,265,111)(24,119,105 - 24,120,275)
sequence
gaattctcctacattcgcaggctgccttcggatgtggtcacaggctacct
ggccctgaggaaggccacaagcattgtcccctgagcctcagaagtggaga
cggagtggaaatgacctctaaagcagactgactgcacttgtgactttgtt
tcctggaaacaaacatttctgctgtcaatctgaaaatgtcagctctgggc
tttggaaagagtgtctggctttactaggaggagttttcagtttgctttct
tcccctccaagtgcaaccttcctagttgaattaaatcatacttcagttgt
tgcctcaagtaaaaattgtttgataagaaaatgcagtaagattatgcatt
taaattaactcaagcaagtccctgaatcttgtttgcaagttgtgaactct
catccaccattttcaaagactgcaataaaggcccacgggcctggcttgtt
ctggagcctaacaagcgagctggccttccgtgggatcagacgcctctgtg
ggttttccaccgcactgttgaacgcctttacccaacgtggcccgcctgca
ggtgatttatttgtgtctgccgcgtggtgaatcgtggtattggcttcctg
gagccagaagagaaattaagctcttaaaaggaaaagtatttagctaggtt
gaagaaaacagattttggaggctaagcctttaagaccactcattgctttt
gcaggggacccaggcttggttcccagcacagctatctctaatgccagttc
cagggcatccaataccctcttctgacttcaccaggggagtacatacatac
atgcaggcaaactcatacatatagaaataatataattttttaaaaattgt
atttttttcttaagaccacactgatatcaaggctgctctgaagtgagtta
ttctgatcctgccgcctgtcttccctgtaagagttggagcctcgaggtgt
accttaaagtgaccggaatgttagagatgcaatttgcagagctggggcaa
ggaaggctccttgtcactgtagttactttcctttgcagtggccaaatgcc
catagaggaatacatgacacttgcctggtgggggagtcagcagtgcgtga
atgcaagcttggccacac
gaattcacactggtgagaaaccctatgggtgtagtgaatgtgggaaaacc
tttagccagagctcaaagcttattagacatcagcgaattcatacaggaga
gagaccatatgaatgtaatgagtgtggaaaagctttcaagcagagctcag
agctgattacccatcagaggatacacagtggagagaaaccttatgaatgt
aatgagtgtggaaaagccttcagtctgaattcaaacctcataagacatca
aagaatccacagtggagaggagccttatcagtgtaatgactgtggcaaaa
ccttcaaaaggagctcagcccttgttcagcaccagagaatccactctggg
gatgaagcgtatatatgtaatgaatgtgggaaggcttttaggcacaggtc
agtgttaatgcgccatcagagagtccacactattaagtaacttaatacaa
tgattcataaatacatccatatatttttatctttatcagtcaaaaggttg
actttggagcaagattccgaggcaatttttttttttaaaaaaagtagtct
ttagtcaatctaacttgctttgtgcggcacttccccaatgttaatgaaat
tttctttgaaacttcctgtgacttaaccagaaagaaatataagaccatta
ctttgagctttgctcttaacattaggaatactcaggaaaaaaagaagtaa
tgcaatattgcgaccttattatctatgagaatgtcatgtgaaaaggcttc
attctgtcactacatctgactgtcaatgtaccaggtttgtgagacagtat
ggttggcgttaagagactgcttaaggaactcaaaaacttttactcaacag
tcaatagacaatgagaaaacatttttcattgatgattttgttgatctaaa
gaacaagcccagaggcaggcagattctgagttcgaggccagcctggtcta
caaagtgagttccaggacagccaggctatacagaagaatccctgtctcaa
aaacaacaaagataaaaaaggaaatgaaatgaactgaaaagtaaaaggat
acaggttatttattaagtgagagtccatctgtcccaactgccatgcctgg
aactaattaaggcttccaatgctagccagtagtagtcatgttaccataat
ttttaatacatccatcgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_24263997_24265111
seq2: B6Ng01-277K12.b_44_1161 (reverse)

seq1  GTGTGGCC-AGC-TGCA-TCACGCACCTGCTGACT-CCCCAC--AGCAGT  44
      |||||||| ||| |||| ||||||| ||||||||| ||||||   |||  
seq2  GTGTGGCCAAGCTTGCATTCACGCA-CTGCTGACTCCCCCACCAGGCAAG  49

seq1  GGTCATGTATTCCTTCTTATTGGGCATTTGGCCACTGC-AAGGAAAGTAA  93
       |||||||||||| |||   |||||||||||||||||| |||||||||||
seq2  TGTCATGTATTCC-TCT--ATGGGCATTTGGCCACTGCAAAGGAAAGTAA  96

seq1  CTACAGTGACAAGGAGCCCTTCCTTGCCCCAGCTCTGCAAATTGCATCTC  143
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTACAGTGACAAGGAG-CCTTCCTTGCCCCAGCTCTGCAAATTGCATCTC  145

seq1  TAACATTCCGGTCACTTTAAGGTACACCTCGAGGCTCC-ACTCTTACAGG  192
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAACATTCCGGTCACTTTAAGGTACACCTCGAGGCTCCAACTCTTACAGG  195

seq1  GAAGACAGGCGGCAGGATCAGAATAACTCACTTCAGAGCAGCCTTGATAT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGGCGGCAGGATCAGAATAACTCACTTCAGAGCAGCCTTGATAT  245

seq1  CAGTGTGGTCTTAAGAAAAAAATACAATTTTTAAAAAATTATATTATTTC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGGTCTTAAGAAAAAAATACAATTTTTAAAAAATTATATTATTTC  295

seq1  TATATGTATGAGTTTGCCTGCATGTATGTATGTACTCCCCTGGTGAAGTC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATGAGTTTGCCTGCATGTATGTATGTACTCCCCTGGTGAAGTC  345

seq1  AGAAGAGGGTATTGGATGCCCTGGAACTGGCATTAGAGATAGCTGTGCTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGGTATTGGATGCCCTGGAACTGGCATTAGAGATAGCTGTGCTG  395

seq1  GGAACCAAGCCTGGGTCCCCTGCAAAAGCAATGAGTGGTCTTAAAGGCTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCAAGCCTGGGTCCCCTGCAAAAGCAATGAGTGGTCTTAAAGGCTT  445

seq1  AGCCTCCAAAATCTGTTTTCTTCAACCTAGCTAAATACTTTTCCTTTTAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCAAAATCTGTTTTCTTCAACCTAGCTAAATACTTTTCCTTTTAA  495

seq1  GAGCTTAATTTCTCTTCTGGCTCCAGGAAGCCAATACCACGATTCACCAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTAATTTCTCTTCTGGCTCCAGGAAGCCAATACCACGATTCACCAC  545

seq1  GCGGCAGACACAAATAAATCACCTGCAGGCGGGCCACGTTGGGTAAAGGC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCAGACACAAATAAATCACCTGCAGGCGGGCCACGTTGGGTAAAGGC  595

seq1  GTTCAACAGTGCGGTGGAAAACCCACAGAGGCGTCTGATCCCACGGAAGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACAGTGCGGTGGAAAACCCACAGAGGCGTCTGATCCCACGGAAGG  645

seq1  CCAGCTCGCTTGTTAGGCTCCAGAACAAGCCAGGCCCGTGGGCCTTTATT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCGCTTGTTAGGCTCCAGAACAAGCCAGGCCCGTGGGCCTTTATT  695

seq1  GCAGTCTTTGAAAATGGTGGATGAGAGTTCACAACTTGCAAACAAGATTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTTTGAAAATGGTGGATGAGAGTTCACAACTTGCAAACAAGATTC  745

seq1  AGGGACTTGCTTGAGTTAATTTAAATGCATAATCTTACTGCATTTTCTTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTTGCTTGAGTTAATTTAAATGCATAATCTTACTGCATTTTCTTA  795

seq1  TCAAACAATTTTTACTTGAGGCAACAACTGAAGTATGATTTAATTCAACT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAATTTTTACTTGAGGCAACAACTGAAGTATGATTTAATTCAACT  845

seq1  AGGAAGGTTGCACTTGGAGGGGAAGAAAGCAAACTGAAAACTCCTCCTAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGTTGCACTTGGAGGGGAAGAAAGCAAACTGAAAACTCCTCCTAG  895

seq1  TAAAGCCAGACACTCTTTCCAAAGCCCAGAGCTGACATTTTCAGATTGAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCAGACACTCTTTCCAAAGCCCAGAGCTGACATTTTCAGATTGAC  945

seq1  AGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTG  995

seq1  CTTTAGAGGTCATTTCCACTCCGTCTCCACTTCTGAGGCTCAGGGGACAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAGGTCATTTCCACTCCGTCTCCACTTCTGAGGCTCAGGGGACAA  1045

seq1  TGCTTGTGGCCTTCCTCAGGGCCAGGTAGCCTGTGACCACATCCGAAGGC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTGGCCTTCCTCAGGGCCAGGTAGCCTGTGACCACATCCGAAGGC  1095

seq1  AGCCTGCGAATGTAGGAGAATTC  1115
      |||||||||||||||||||||||
seq2  AGCCTGCGAATGTAGGAGAATTC  1118

seq1: chr18_24119105_24120275
seq2: B6Ng01-277K12.g_69_1238

seq1  GAATTCACACTGGTGAGAAACCCTATGGGTGTAGTGAATGTGGGAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGGTGAGAAACCCTATGGGTGTAGTGAATGTGGGAAAACC  50

seq1  TTTAGCCAGAGCTCAAAGCTTATTAGACATCAGCGAATTCATACAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCAGAGCTCAAAGCTTATTAGACATCAGCGAATTCATACAGGAGA  100

seq1  GAGACCATATGAATGTAATGAGTGTGGAAAAGCTTTCAAGCAGAGCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCATATGAATGTAATGAGTGTGGAAAAGCTTTCAAGCAGAGCTCAG  150

seq1  AGCTGATTACCCATCAGAGGATACACAGTGGAGAGAAACCTTATGAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTACCCATCAGAGGATACACAGTGGAGAGAAACCTTATGAATGT  200

seq1  AATGAGTGTGGAAAAGCCTTCAGTCTGAATTCAAACCTCATAAGACATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTGTGGAAAAGCCTTCAGTCTGAATTCAAACCTCATAAGACATCA  250

seq1  AAGAATCCACAGTGGAGAGGAGCCTTATCAGTGTAATGACTGTGGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCACAGTGGAGAGGAGCCTTATCAGTGTAATGACTGTGGCAAAA  300

seq1  CCTTCAAAAGGAGCTCAGCCCTTGTTCAGCACCAGAGAATCCACTCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAAAGGAGCTCAGCCCTTGTTCAGCACCAGAGAATCCACTCTGGG  350

seq1  GATGAAGCGTATATATGTAATGAATGTGGGAAGGCTTTTAGGCACAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGCGTATATATGTAATGAATGTGGGAAGGCTTTTAGGCACAGGTC  400

seq1  AGTGTTAATGCGCCATCAGAGAGTCCACACTATTAAGTAACTTAATACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAATGCGCCATCAGAGAGTCCACACTATTAAGTAACTTAATACAA  450

seq1  TGATTCATAAATACATCCATATATTTTTATCTTTATCAGTCAAAAGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCATAAATACATCCATATATTTTTATCTTTATCAGTCAAAAGGTTG  500

seq1  ACTTTGGAGCAAGATTCCGAGGCAATTTTTTTTTTTAAAAAAAGTAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGAGCAAGATTCCGAGGCAATTTTTTTTTTTAAAAAAAGTAGTCT  550

seq1  TTAGTCAATCTAACTTGCTTTGTGCGGCACTTCCCCAATGTTAATGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAATCTAACTTGCTTTGTGCGGCACTTCCCCAATGTTAATGAAAT  600

seq1  TTTCTTTGAAACTTCCTGTGACTTAACCAGAAAGAAATATAAGACCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGAAACTTCCTGTGACTTAACCAGAAAGAAATATAAGACCATTA  650

seq1  CTTTGAGCTTTGCTCTTAACATTAGGAATACTCAGGAAAAAAAGAAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGCTTTGCTCTTAACATTAGGAATACTCAGGAAAAAAAGAAGTAA  700

seq1  TGCAATATTGCGACCTTATTATCTATGAGAATGTCATGTGAAAAGGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATTGCGACCTTATTATCTATGAGAATGTCATGTGAAAAGGCTTC  750

seq1  ATTCTGTCACTACATCTGACTGTCAATGTACCAGGTTTGTGAGACAGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCACTACATCTGACTGTCAATGTACCAGGTTTGTGAGACAGTAT  800

seq1  GGTTGGCGTTAAGAGACTGCTTAAGGAACTCAAAAACTTTTACTCAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCGTTAAGAGACTGCTTAAGGAACTCAAAAACTTTTACTCAACAG  850

seq1  TCAATAGACAATGAGAAAACA-TTTTCATTGATGA-TTTGTTGATCTAAA  898
      ||||||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  TCAATAGACAATGAGAAAACATTTTTCATTGATGATTTTGTTGATCTAAA  900

seq1  G-ACAAGCCCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCT  947
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAACAAGCCCAGAGGCAGGCAGA-TTCTGAGTTCGAGGCCAGCCTGGTCT  949

seq1  ACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAG-AGAAACCCTGTCTC  996
      |||||||||||||||||||||||| |||||||||| |||| |||||||||
seq2  ACAAAGTGAGTTCCAGGACAGCCA-GGCTATACAGAAGAATCCCTGTCTC  998

seq1  AAAAAACAAACAAAGATAAAAAA-GAAATGAAATGAACTTGAAAAGTAAA  1045
      |||||   ||||||||||||||| |||||||||||||| |||||||||||
seq2  AAAAA--CAACAAAGATAAAAAAGGAAATGAAATGAAC-TGAAAAGTAAA  1045

seq1  A-GATACAAGTTAATTTATAAAGTGAAGAGTCCCATCTGTCCCCACTGCC  1094
      | |||||| ||| |||||| ||||| ||||| ||||||||||| ||||||
seq2  AGGATACAGGTT-ATTTATTAAGTG-AGAGT-CCATCTGTCCCAACTGCC  1092

seq1  ATGCTGGGAACTAATTTAGGGCTTCACATGCTAGCAAGTAGTTAGTCCTA  1144
      ||||  |||||||| ||| ||||||  |||||||| ||||| |||||  |
seq2  ATGCCTGGAACTAA-TTAAGGCTTCCAATGCTAGCCAGTAG-TAGTC--A  1138

seq1  TGTTACTATATTTTTTAATAC-----TCGTTT  1171
      |||||| ||| ||||||||||     ||||||
seq2  TGTTACCATAATTTTTAATACATCCATCGTTT  1170