BAC Information

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BAC

Clone NameB6Ng01-278H09
Chromosome18 (Build37)
Map Location 42,081,056 - 42,213,955
singlet/doubletdoublet
Overlap genePrelid2, Gm851, Sh3rf2
Upstream geneLOC677182, LOC100041988, LOC100041997
Downstream geneEG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278H09.bB6Ng01-278H09.g
ACCGA078698GA078699
length1,0861,107
definitionB6Ng01-278H09.b B6Ng01-278H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,212,859 - 42,213,955)(42,081,056 - 42,081,994)
sequence
gaattctgtctacatgcggctgaaggaaatctgtctcctagctcttggca
tacacatagccagcctctaaagtgcacatgatatgagcaagcaagaattc
tcttaccccatccatgtggatcctgacactgggcaccagccggaaagggc
tagcctgtagacttctggggctgctcttggctttcctgttgtcctgcaag
gtcagtatccgaggccttcggaaggagcctcctttccacgagctctgtcc
ggaacgcacaccatccagcaaacgcacgagcaacaggttggctggcagag
cctcgatgctgcagaacaccagagtcctgcattccgggcacctcagctcc
ttgtgggccttgaaaatcctctgtagacatggtttgcagaaggtgtgctg
gcaggggagaactttggctgtgacatcgagcttttcaaagcacacagggc
actccaggagatcaagtaacgtcaaatcatccattttattttaaaactcc
agtcccaacctggagaagcaggatccacattgtaggggcagcgagccgag
ggggtagagctggtcttttgggagcatcagaactccctgcctgtttgaaa
ggaggaaaaaaaaatgtgactgccctgagaggtgtgtcccacctacatgg
aggcagtgtcttgagaggcagctgcaagtactttgttccgggagcgtcaa
atgactcattccgtgctgcaggttagaagactcagcttgctgcaagggat
cagagggaattctgcacagtgactgactgctcattgcctctgagtggagg
gccctagcaaggagagaaaactgtcctgctgaggcagggagttacttgtc
tactagaagggctggagggatgctttctcctgcctagaacatagccagtc
ttaactcagactaaggctctggcgatttctgtgagatatctactaccttt
ccttccctcctcttcccacccccccccccccccagatcagtttgtttata
gctccagcagcacaagcagacagctttgggagttgtttatcgggggtcca
atgcagatgaatgttctttctccacagtgaagcttg
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaaat
ggtcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgaga
ttccacttcactccagtcagaatggctaaaactcaggtgacagcagatgt
tggcgaggatgtggagaaaggggaacactcctccattgttggtgagattg
caagcttgtacaaccactctggaaatcagtctggcggttcctcagaaaat
tggacatagtactaccggaggatccagcaatacctctcctgggcatatat
ccagaagatgtcccgaccggtaagaagaacacatgctccactatgttcat
agcagccttgtttataatagccagaagctggaaagaacccagatgcccct
caacagaggaatggatacagaaaatgtggtacatttgcacacacacattt
taaaaagagaacaaaaaatggagctggagagatggctcagttgttaagag
cactggctgctcttccagtgaacctgggttcgagtcccagcacctacatg
gcagctcacaacccatctgtaactccagtcccagaggttataatactctc
tcctgtcttcaacagacaatgcatatacatgatgcacagacaacatgcaa
atgagatacctgtacacaataaataaattttaaaagaagaaacaaaacag
gatagacagacagactgacagatataatgctaacaaaaacctgtaagcat
tagaattagagctgctgcttacctattatactcccctggggtttataaat
ctcacatactgggtatgtattactttggcaatcatataaaactaatagta
aagccatgactaccatttctatagaagtaaaacattctgaatatgttctg
tgcaaccaagaaccattttcagccaaagtgcagctaacatggactagccc
atcctttatcacatgtgggtctccccacactctgaaagtggttctttcct
ccctagcctgcacatggagtgggtgtgttttataacaagagcacacatgt
gatcagtttctctcgctcctctctgtacacctacagacagactgcctcca
cactcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_42212859_42213955
seq2: B6Ng01-278H09.b_45_1130 (reverse)

seq1  CAAGCCTCACTGTGGAGAAAAGAACATCTAATCTGCATGGGGCCCCCGAT  50
      ||||| ||||||||||| ||||||||| | |||||||| || ||||||||
seq2  CAAGCTTCACTGTGGAG-AAAGAACAT-TCATCTGCATTGGACCCCCGAT  48

seq1  AAACACTTCCCAAAGCTTGTCTGCTTGTGCTGCTGGAGTTTATAAAACAA  100
      |||||  ||||||||| |||||||||||||||||||||  ||| ||||||
seq2  AAACAACTCCCAAAGC-TGTCTGCTTGTGCTGCTGGAG-CTAT-AAACAA  95

seq1  ACTGATCTGGGGGGGGGGGGGGGGTTGGGGGAGAGGGAGGGAAGGAAAGG  150
      |||||||||||||||||||||||    ||| ||| |||||||||||||||
seq2  ACTGATCTGGGGGGGGGGGGGGG---TGGGAAGA-GGAGGGAAGGAAAGG  141

seq1  TAGGTAGATATCCTCACAGAAATCGCCAGAGCCTTAGTCTGAGTTAAGAC  200
      || |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TA-GTAGATAT-CTCACAGAAATCGCCAGAGCCTTAGTCTGAGTTAAGAC  189

seq1  TGGCTATGTTCTAGGCAGGAGAAAGCATCCCTCCAGCCCTTCTAGTAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATGTTCTAGGCAGGAGAAAGCATCCCTCCAGCCCTTCTAGTAGAC  239

seq1  AAGTAACTCCCTGCCTCAGCAGGACAGTTTTCTCTCCTTGCTAGGGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACTCCCTGCCTCAGCAGGACAGTTTTCTCTCCTTGCTAGGGCCCT  289

seq1  CCACTCAGAGGCAATGAGCAGTCAGTCACTGTGCAGAATTCCCTCTGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAGAGGCAATGAGCAGTCAGTCACTGTGCAGAATTCCCTCTGATC  339

seq1  CCTTGCAGCAAGCTGAGTCTTCTAACCTGCAGCACGGAATGAGTCATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGCAAGCTGAGTCTTCTAACCTGCAGCACGGAATGAGTCATTTG  389

seq1  ACGCTCCCGGAACAAAGTACTTGCAGCTGCCTCTCAAGACACTGCCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCCCGGAACAAAGTACTTGCAGCTGCCTCTCAAGACACTGCCTCCA  439

seq1  TGTAGGTGGGACACACCTCTCAGGGCAGTCACATTTTTTTTTCCTCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGGGACACACCTCTCAGGGCAGTCACATTTTTTTTTCCTCCTTT  489

seq1  CAAACAGGCAGGGAGTTCTGATGCTCCCAAAAGACCAGCTCTACCCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGGCAGGGAGTTCTGATGCTCCCAAAAGACCAGCTCTACCCCCTC  539

seq1  GGCTCGCTGCCCCTACAATGTGGATCCTGCTTCTCCAGGTTGGGACTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGCTGCCCCTACAATGTGGATCCTGCTTCTCCAGGTTGGGACTGGA  589

seq1  GTTTTAAAATAAAATGGATGATTTGACGTTACTTGATCTCCTGGAGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAATAAAATGGATGATTTGACGTTACTTGATCTCCTGGAGTGCC  639

seq1  CTGTGTGCTTTGAAAAGCTCGATGTCACAGCCAAAGTTCTCCCCTGCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCTTTGAAAAGCTCGATGTCACAGCCAAAGTTCTCCCCTGCCAG  689

seq1  CACACCTTCTGCAAACCATGTCTACAGAGGATTTTCAAGGCCCACAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTCTGCAAACCATGTCTACAGAGGATTTTCAAGGCCCACAAGGA  739

seq1  GCTGAGGTGCCCGGAATGCAGGACTCTGGTGTTCTGCAGCATCGAGGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGTGCCCGGAATGCAGGACTCTGGTGTTCTGCAGCATCGAGGCTC  789

seq1  TGCCAGCCAACCTGTTGCTCGTGCGTTTGCTGGATGGTGTGCGTTCCGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCCAACCTGTTGCTCGTGCGTTTGCTGGATGGTGTGCGTTCCGGA  839

seq1  CAGAGCTCGTGGAAAGGAGGCTCCTTCCGAAGGCCTCGGATACTGACCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCGTGGAAAGGAGGCTCCTTCCGAAGGCCTCGGATACTGACCTT  889

seq1  GCAGGACAACAGGAAAGCCAAGAGCAGCCCCAGAAGTCTACAGGCTAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACAACAGGAAAGCCAAGAGCAGCCCCAGAAGTCTACAGGCTAGCC  939

seq1  CTTTCCGGCTGGTGCCCAGTGTCAGGATCCACATGGATGGGGTAAGAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCGGCTGGTGCCCAGTGTCAGGATCCACATGGATGGGGTAAGAGAA  989

seq1  TTCTTGCTTGCTCATATCATGTGCACTTTAGAGGCTGGCTATGTGTATGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTTGCTCATATCATGTGCACTTTAGAGGCTGGCTATGTGTATGC  1039

seq1  CAAGAGCTAGGAGACAGATTTCCTTCAGCCGCATGTAGACAGAATTC  1097
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCTAGGAGACAGATTTCCTTCAGCCGCATGTAGACAGAATTC  1086

seq1: chr18_42081056_42081994
seq2: B6Ng01-278H09.g_247_1172

seq1  TCCATTGTTGGTGAGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTTGGTGAGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTC  50

seq1  TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAAT  100

seq1  ACCTCTCCTGGGCATATATCCAGAAGATGTCCCGACCGGTAAGAAGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCCTGGGCATATATCCAGAAGATGTCCCGACCGGTAAGAAGAACA  150

seq1  CATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGG  200

seq1  AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA  250

seq1  CATTTGCACACACACATTTTAAAAAGAGAACAAAAAATGGAGCTGGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCACACACACATTTTAAAAAGAGAACAAAAAATGGAGCTGGAGAG  300

seq1  ATGGCTCAGTTGTTAAGAGCACTGGCTGCTCTTCCAGTGAACCTGGGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGTTGTTAAGAGCACTGGCTGCTCTTCCAGTGAACCTGGGTTC  350

seq1  GAGTCCCAGCACCTACATGGCAGCTCACAACCCATCTGTAACTCCAGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCAGCACCTACATGGCAGCTCACAACCCATCTGTAACTCCAGTCC  400

seq1  CAGAGGTTATAATACTCTCTCCTGTCTTCAACAGACAATGCATATACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTATAATACTCTCTCCTGTCTTCAACAGACAATGCATATACATG  450

seq1  ATGCACAGACAACATGCAAATGAGATACCTGTACACAATAAATAAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAGACAACATGCAAATGAGATACCTGTACACAATAAATAAATTTT  500

seq1  AAAAGAAGAAACAAAACAGGATAGACAGACAGACTGACAGATATAATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAAACAAAACAGGATAGACAGACAGACTGACAGATATAATGCT  550

seq1  AACAAAAACCTGTAAGCATTAGAATTAGAGCTGCTGCTTACCTATTATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACCTGTAAGCATTAGAATTAGAGCTGCTGCTTACCTATTATAC  600

seq1  TCCCCTGGGGTTTATAAATCTCACATACTGGGTATGTATTACTTTGGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGGGGTTTATAAATCTCACATACTGGGTATGTATTACTTTGGCAA  650

seq1  TCATATAAAACTAATAGTAAAGCCATGACTACCATTTCTATAGAAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAAAACTAATAGTAAAGCCATGACTACCATTTCTATAGAAGTAAA  700

seq1  ACATTCTGAATATGTTCTGTGCAACCAAGAACCATTTTCAGCCAAAGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGAATATGTTCTGTGCAACCAAGAACCATTTTCAGCCAAAGTGC  750

seq1  AGCTAACATGGACTAGCCCATCCTTTATCACCATGTGGGTCT-CCCACAC  799
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  AGCTAACATGGACTAGCCCATCCTTTATCA-CATGTGGGTCTCCCCACAC  799

seq1  TCTGAAAGGTTGGTTCTTT-CTCCCTAGCCTGCACATGAAGTGGGTGGTG  848
      ||||||||  ||||||||| |||||||||||||||||| ||||||||   
seq2  TCTGAAAG--TGGTTCTTTCCTCCCTAGCCTGCACATGGAGTGGGTGTGT  847

seq1  TTTATAACAAGAAGCACACATGGTGATTCAGGTTTTCCTCCTTCGGCCTT  898
      ||||||||||| ||||||||| |||| |||| || ||     |||    |
seq2  TTTATAACAAG-AGCACACAT-GTGA-TCAGTTTCTC-----TCG---CT  886

seq1  CCTCTCTGTTACACCTACAGACAGGACTGCCT-CACACTCAC  939
      |||||||| |||||||||||||| |||||||| |||||||||
seq2  CCTCTCTG-TACACCTACAGACA-GACTGCCTCCACACTCAC  926