BAC Information

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BAC

Clone NameB6Ng01-279C21
Chromosome18 (Build37)
Map Location 51,998,049 - 52,114,176
singlet/doubletdoublet
Overlap geneEG240289
Upstream geneLOC100042385, Prr16
Downstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279C21.bB6Ng01-279C21.g
ACCGA079227GA079228
length1,1881,148
definitionB6Ng01-279C21.b B6Ng01-279C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,113,222 - 52,114,176)(51,998,049 - 51,999,209)
sequence
gaattcaggcggcacaccatagaaacctattacactccattccatttaca
agcaaagtattatatttcctaggaaatatattatggcataacctgattgg
atagtttggatactctaagttttttagggctaataatttgaagattagca
ggtttgaaaagtagcaggaaagggtgaaagcactctgaatggagttcaag
taccatgtttgtcatttgtttcctcgatgaacttgaaaacattatttcag
cttcatgtgctttcatttctatctatgaaatgggattagtgctatcatag
tctgtcatggacatttaaaataaaaaaaaaacagttttaggatgcttaga
gtagtgcttggcatatagtattcagtagaaaaattgtagttatagcccat
gctttgtttaacaattctaaggcaagcagaaggacccggaacatttgtaa
cattgcatgttctttgtgacagaaatctggacagaatttagctggcttct
tacaaaggctataaacatggtgtttgcccaggtggcactttcatctccca
gagtgactgggaaatggccttctctcaagctcacacggtgattggtagaa
ctcaactttttgaaataagtctgaaagacggcttacctgtcagcccacag
ttgtcctttgtttcttgctgtatggcactctgtaatgtgacagattgcat
tattatacacatcaggaaagaagtctaacaaagagaatattatgttacta
tgtaccaatgtaggaaaccatctgttccctttcactgtattctgttagtt
taaagcaaactacaggctctgaccacactcggcagaaaaatattactcac
agttattttagcttcacactccaaccaagagcaacttaagggaggaaaag
ttttatctggcttacaattctgttacagccatctctgatgggaaatcagg
cagtaactcaaacagctagacgtatagctacagtcaaatcagaaacactg
gatccttatcggctacttgcacctaaatttcttctgtcttacactgttta
agaacccactgcctaagggatgtactgccatgaatgcttggtccctctcc
catcaggtgaacagaagatgcctatagactacttacgacccaagtcaatc
ctagaatacctcaattgagccttttcgtctttttcttg

gaattccattgtcttggaaagagattagcaccaatagagactgtctacag
tagtaagttcaagggaccaaggctagccttagctagtgggatttgaagtt
atagtgatttatatacgatccacattgcacaaaaaagtaactcaaaatga
gtcaaacatctaaaatgaaagctgatgcacagaaactgctagaagaaaaa
tgtacgaagtaccctacatgacagcagtgtaggaaagaactttataaatg
gtattccattcatctagaataaggagaaaactgataagtgagatttcaca
aaaatgaaaacctgcatagccagagaaataatcaattgggagaggaggaa
gcttacataatggaaaggagtctttgccagctatacagctaacataaaac
atacatataaattatttgattaaattctgggattcacaaaaggcacaggg
gtctaggtcagaataaaataagagatagactgcaaggtgcatagcatatt
gaatgaaaatatgagcaatgtatgtgcagggctgtgggcatctgcatact
tatagaccataggtctgtgtgcaaatgaacaccatgcattctacacatga
gaaaagagagatctgaagaacacaattcaaaggggcccctgaattttgct
ttttatatgctaccctagaagataaaagaaagttgaatttattttaaacc
tacatagagtagtataagagaaacagtgacattcctgtgtgctgcaaagc
attcctaatcacagtaacaggaaaggcagtgacaatgggcttgttttcta
agtatcagttagctacttaaaagaggaaaaggtcaaagggagtcagtgga
tctgtgggtatattataggatcatacttaaatcccgtgtctggtagatag
ggagagaaaggaagggaaagaagaaaggaaaacaagggagagtatatggc
agtcatgagaaagtatataatgcatatctttaaactctgtgccattattt
tttttcttttaagcatatgatgcataaaaagcctcacacattgaatgttc
acagaacacaaaaaatatgcttttgttataaagaagacagccaccataga
aacttctgcccaaggctgtggcatttttttttcactgagaatcattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_52113222_52114176
seq2: B6Ng01-279C21.b_277_1219 (reverse)

seq1  CAAGAAAAAAACGAAAAAGCTTCAATTGAGTGATTCTTAAGATTGACTTG  50
      ||||||||| ||||||| || |||||||||  |||| || ||||||||||
seq2  CAAGAAAAAGACGAAAAGGC-TCAATTGAGGTATTC-TAGGATTGACTTG  48

seq1  GTCTGTATGTATGTCTATAGGGGCATCTTCCTTGTTCA-CTGATGGGAGA  99
      |   ||| ||| |||||||  |||||||||  |||||| |||||||||||
seq2  GGTCGTAAGTA-GTCTATA--GGCATCTTC--TGTTCACCTGATGGGAGA  93

seq1  GGACCAAAGCCATCATGGGCAGTACCATTCCCTAGGCAGTGGG-TCTTAA  148
      ||  | ||||  |||| ||||||| ||| || ||||||||||| ||||||
seq2  GGGACCAAGCATTCAT-GGCAGTA-CATCCCTTAGGCAGTGGGTTCTTAA  141

seq1  ACAGTGTAAGACAGAAGAAATTTAGGTGCAAGTAGCCGATAAGGATCCAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTAAGACAGAAGAAATTTAGGTGCAAGTAGCCGATAAGGATCCAG  191

seq1  TTGTTTCTGATTTTGACTGTAGCTATACCTTCTAGCTGTTTGAGTTACTG  248
       ||||||||| |||||||||||||||| | ||||||||||||||||||||
seq2  -TGTTTCTGA-TTTGACTGTAGCTATA-CGTCTAGCTGTTTGAGTTACTG  238

seq1  CCCTGATTTCCCATCAGAGATGGGCTGTAACAGAATTGTAAGCCAGATAA  298
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  -CCTGATTTCCCATCAGAGAT-GGCTGTAACAGAATTGTAAGCCAGATAA  286

seq1  AACTTTTCCTCCCTTAAGTTGCTCTTGGTTGGAGTGTGAAGCTAAAATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCCTCCCTTAAGTTGCTCTTGGTTGGAGTGTGAAGCTAAAATAA  336

seq1  CTGTGAGTAATATTTTTCTGCCGAGTGTGGTCAGAGCCTGTAGTTTGCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTAATATTTTTCTGCCGAGTGTGGTCAGAGCCTGTAGTTTGCTT  386

seq1  TAAACTAACAGAATACAGTGAAAGGGAACAGATGGTTTCCTACATTGGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAACAGAATACAGTGAAAGGGAACAGATGGTTTCCTACATTGGTA  436

seq1  CATAGTAACATAATATTCTCTTTGTTAGACTTCTTTCCTGATGTGTATAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAACATAATATTCTCTTTGTTAGACTTCTTTCCTGATGTGTATAA  486

seq1  TAATGCAATCTGTCACATTACAGAGTGCCATACAGCAAGAAACAAAGGAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAATCTGTCACATTACAGAGTGCCATACAGCAAGAAACAAAGGAC  536

seq1  AACTGTGGGCTGACAGGTAAGCCGTCTTTCAGACTTATTTCAAAAAGTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGGGCTGACAGGTAAGCCGTCTTTCAGACTTATTTCAAAAAGTTG  586

seq1  AGTTCTACCAATCACCGTGTGAGCTTGAGAGAAGGCCATTTCCCAGTCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTACCAATCACCGTGTGAGCTTGAGAGAAGGCCATTTCCCAGTCAC  636

seq1  TCTGGGAGATGAAAGTGCCACCTGGGCAAACACCATGTTTATAGCCTTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGATGAAAGTGCCACCTGGGCAAACACCATGTTTATAGCCTTTG  686

seq1  TAAGAAGCCAGCTAAATTCTGTCCAGATTTCTGTCACAAAGAACATGCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGCCAGCTAAATTCTGTCCAGATTTCTGTCACAAAGAACATGCAA  736

seq1  TGTTACAAATGTTCCGGGTCCTTCTGCTTGCCTTAGAATTGTTAAACAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAAATGTTCCGGGTCCTTCTGCTTGCCTTAGAATTGTTAAACAAA  786

seq1  GCATGGGCTATAACTACAATTTTTCTACTGAATACTATATGCCAAGCACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGCTATAACTACAATTTTTCTACTGAATACTATATGCCAAGCACT  836

seq1  ACTCTAAGCATCCTAAAACTGTTTTTTTTTTATTTTAAATGTCCATGACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAGCATCCTAAAACTGTTTTTTTTTTATTTTAAATGTCCATGACA  886

seq1  GACTATGATAGCACTAATCCCATTTCATAGATAGAAATGAAAGCACATGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGATAGCACTAATCCCATTTCATAGATAGAAATGAAAGCACATGA  936

seq1  AGCTGAA  955
      |||||||
seq2  AGCTGAA  943


seq1: chr18_51998049_51999209
seq2: B6Ng01-279C21.g_65_1212

seq1  GAATTCCATTGTCTTGGAAAGAGATTAGCACCAATAGAGACTGTCTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGTCTTGGAAAGAGATTAGCACCAATAGAGACTGTCTACAG  50

seq1  TAGTAAGTTCAAGGGACCAAGGCTAGCCTTAGCTAGTGGGATTTGAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGTTCAAGGGACCAAGGCTAGCCTTAGCTAGTGGGATTTGAAGTT  100

seq1  ATAGTGATTTATATACGATCCACATTGCACAAAAAAGTAACTCAAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGATTTATATACGATCCACATTGCACAAAAAAGTAACTCAAAATGA  150

seq1  GTCAAACATCTAAAATGAAAGCTGATGCACAGAAACTGCTAGAAGAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACATCTAAAATGAAAGCTGATGCACAGAAACTGCTAGAAGAAAAA  200

seq1  TGTACGAAGTACCCTACATGACAGCAGTGTAGGAAAGAACTTTATAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGAAGTACCCTACATGACAGCAGTGTAGGAAAGAACTTTATAAATG  250

seq1  GTATTCCATTCATCTAGAATAAGGAGAAAACTGATAAGTGAGATTTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCATTCATCTAGAATAAGGAGAAAACTGATAAGTGAGATTTCACA  300

seq1  AAAATGAAAACCTGCATAGCCAGAGAAATAATCAATTGGGAGAGGAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAACCTGCATAGCCAGAGAAATAATCAATTGGGAGAGGAGGAA  350

seq1  GCTTACATAATGGAAAGGAGTCTTTGCCAGCTATACAGCTAACATAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACATAATGGAAAGGAGTCTTTGCCAGCTATACAGCTAACATAAAAC  400

seq1  ATACATATAAATTATTTGATTAAATTCTGGGATTCACAAAAGGCACAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATAAATTATTTGATTAAATTCTGGGATTCACAAAAGGCACAGGG  450

seq1  GTCTAGGTCAGAATAAAATAAGAGATAGACTGCAAGGTGCATAGCATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGTCAGAATAAAATAAGAGATAGACTGCAAGGTGCATAGCATATT  500

seq1  GAATGAAAATATGAGCAATGTATGTGCAGGGCTGTGGGCATCTGCATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAATATGAGCAATGTATGTGCAGGGCTGTGGGCATCTGCATACT  550

seq1  TATAGACCATAGGTCTGTGTGCAAATGAACACCATGCATTCTACACATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACCATAGGTCTGTGTGCAAATGAACACCATGCATTCTACACATGA  600

seq1  GAAAAGAGAGATCTGAAGAACACAATTCAAAGGGGCCCCTGAATTTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGAGATCTGAAGAACACAATTCAAAGGGGCCCCTGAATTTTGCT  650

seq1  TTTTATATGCTACCCTAGAAGATAAAAGAAAGTTGAATTTATTTTAAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATGCTACCCTAGAAGATAAAAGAAAGTTGAATTTATTTTAAACC  700

seq1  TACATAGAGTAGTATAAGAGAAACAGTGACATTCCTGTGTGCTGCAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAGTAGTATAAGAGAAACAGTGACATTCCTGTGTGCTGCAAAGC  750

seq1  ATTCCTAATCACAGTAACAGGAAAGGCAGTGACAATGGGCTTGTTTTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAATCACAGTAACAGGAAAGGCAGTGACAATGGGCTTGTTTTCTA  800

seq1  AGTATCAGTTAGCTACTTAAAAGAGGAAAAGGTCAAAGGGAGTCAGTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAGTTAGCTACTTAAAAGAGGAAAAGGTCAAAGGGAGTCAGTGGA  850

seq1  TCTGTGGGTATATTATAGGATCATACTTAAATCCCGTGTCTGGTAGATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGTATATTATAGGATCATACTTAAATCCCGTGTCTGGTAGATAG  900

seq1  GGAGAGAAAGGAAGGGAAAGAAGAAAGGAAAACAAGGGAGAGTATATGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAAGGAAGGGAAAGAAGAAAGGAAAACAAGGGAGAGTATATGGC  950

seq1  AGTCATGAGAAAAGTATATAAATGCATAATCTTTAAACTCTGTGCCATTA  1000
      ||||||||| ||||||||| ||||||| ||||||||||||||||||||||
seq2  AGTCATGAG-AAAGTATAT-AATGCAT-ATCTTTAAACTCTGTGCCATTA  997

seq1  -TTTTTTTCTTTTAAGCATATGAATGCATAAAAAGCCCCAACCACATTGA  1049
       ||||||||||||||||||||| |||||||||||||| ||  ||||||| 
seq2  TTTTTTTTCTTTTAAGCATATG-ATGCATAAAAAGCCTCA--CACATTG-  1043

seq1  AATGTTCCACAG-ACACAAAAATAATGCTTTTGTTTATAAAG-AGACAGC  1097
      |||||| ||||| |||||||||  ||||||||| |||||||| |||||||
seq2  AATGTT-CACAGAACACAAAAAATATGCTTTTG-TTATAAAGAAGACAGC  1091

seq1  CAAACATAGAAATTTCCTGGCCAAAGGCTGTTGGGCATTTTTTTTTTCAC  1147
      | | |||||||| |||   ||| ||||||||  |||| ||||||||||||
seq2  C-ACCATAGAAACTTC--TGCCCAAGGCTGT--GGCA-TTTTTTTTTCAC  1135

seq1  TTGAAGATCATTGG  1161
       |||  ||||||||
seq2  -TGAGAATCATTGG  1148


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