BAC Information

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BAC

Clone NameB6Ng01-280D09
Chromosome18 (Build37)
Map Location 85,265,171 - 85,421,923
singlet/doubletdoublet
Overlap genenone
Upstream geneZadh2, LOC669856, Zfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
Downstream geneLOC665382, LOC545269, LOC545270, LOC665402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280D09.bB6Ng01-280D09.g
ACCGA079994GA079995
length1,0291,011
definitionB6Ng01-280D09.b B6Ng01-280D09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,265,171 - 85,266,176)(85,420,966 - 85,421,923)
sequence
gaattctcttttgtgttcaataagcccacaatgttttaggaaagatttaa
aacagtgaacgacaaagatctcactagagttctcacacagctccgatctg
ctgcatcatcccaagatttagctttacttctgacccagcccccagggagc
tttgttagcaatcttatttctttagagttatcatgacaatgacgccagaa
gtctgcatttcttctgaaatactgatttatgtttaagattctggttcaaa
tttttgtgagagatttcaggggttagaagtatttcattttagcaatagca
tctttaattttgtccaagactgtaagtaaagtctttttttttctcatatt
actttgaggattactttccacatattcaagaactttttttgtttcatata
gtaattggccccatgccaccaccattcctttgtccagacagcaggaagga
tcatcctggcacctctgttcctttaagaaggaagaggctgcctttggcaa
tgtatggcaggctttccttgcattcactagaaatgaattcaaaatttctt
ttttattcctgaagtcattaatttatcccaagaagtgacagactagtatt
gtctcacatcaaagatacagtctcttcccaacagcttatcagctggcccc
aaacctttaacacccagggccttagggttgtttcaggttggaattatgat
atgaggtttaaatgcagaactatgatccctggcttttctgttctatttct
atacagttggggtcacttatatatactatcatatcatctgcaaatagtga
tattttgacttcttcctttccaatttatatccccttggtcttcttttgtt
gtctaattgctctggctagaacttcaagtactatattaaactggtaggga
gaaagtgggcagccttgtctagtccctgattttagtggcattgcttccag
cttctctccatttagtttgctgttgggtactgctaatcagcagtagattg
cttttattattgtttaggtatgggccctt

gaattcctaggatgaagaaataaagattaaagaattaaaggatgatgtat
aagcatatagaaagttaatactttgttctcctagttacttgaagaattac
agatgataatggctagagagatattagtgagagctagcaactttacttac
ataaattttaaaacttcattagaaattcttttaaccctagtagtctgtca
cctttctgttttcacatgaaacccattagtaaagactgctgcctactgta
ccaggaaaccataagagctgtgcccagctatccatgaagaacaagctgtg
taaaccaataaggaaccatgcttttgctttgtttttggcttctgttttaa
agaaggaggggttgggactaatgatctggggttcatagaagttgcataaa
tttaaggatttctagaataattactaataattaccaaagacttgtttatg
taactttagtcgataaaagagtcagttaaggctgtctggttgggagaagg
cagaagaaggaagaaaggagaaggaagtatggtgagaatctttgggcaaa
gagagagagcacttgagttgacagcttgcattcattgactgagtcaatat
tagattagggtcttctcaggaccttcctcatgctgaggcaggatctcagc
acctcatgtcctctcccacactctcatgacccactcaagctttcttgata
ggacactctccatgctaattgaaagatatttttccagtcacagagcagaa
ggactactattccaggctcacacaccccctccctcagaccagctctcccc
actgactgtctgacttttgggactcactacccagttcacttttacagatc
ttaaattgaactctcggaattttttttcctagacaatgccaaagttgcct
gtggaaatgagtctctttaaaaactgtttaaattcagagttttctccaga
ttgttgtttattgcctccaactatttcagcaaagccatttttcttacatg
aataaaatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_85265171_85266176
seq2: B6Ng01-280D09.b_47_1052

seq1  GAATTCTCTTTTGTGTTCAATAAGCCCACAATGTTTTAGGAAAGATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTGTGTTCAATAAGCCCACAATGTTTTAGGAAAGATTTAA  50

seq1  AACAGTGAACGACAAAGATCTCACTAGAGTTCTCACACAGCTCCGATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGAACGACAAAGATCTCACTAGAGTTCTCACACAGCTCCGATCTG  100

seq1  CTGCATCATCCCAAGATTTAGCTTTACTTCTGACCCAGCCCCCAGGGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCATCCCAAGATTTAGCTTTACTTCTGACCCAGCCCCCAGGGAGC  150

seq1  TTTGTTAGCAATCTTATTTCTTTAGAGTTATCATGACAATGACGCCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGCAATCTTATTTCTTTAGAGTTATCATGACAATGACGCCAGAA  200

seq1  GTCTGCATTTCTTCTGAAATACTGATTTATGTTTAAGATTCTGGTTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATTTCTTCTGAAATACTGATTTATGTTTAAGATTCTGGTTCAAA  250

seq1  TTTTTGTGAGAGATTTCAGGGGTTAGAAGTATTTCATTTTAGCAATAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGAGAGATTTCAGGGGTTAGAAGTATTTCATTTTAGCAATAGCA  300

seq1  TCTTTAATTTTGTCCAAGACTGTAAGTAAAGTCTTTTTTTTTCTCATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATTTTGTCCAAGACTGTAAGTAAAGTCTTTTTTTTTCTCATATT  350

seq1  ACTTTGAGGATTACTTTCCACATATTCAAGAACTTTTTTTGTTTCATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGGATTACTTTCCACATATTCAAGAACTTTTTTTGTTTCATATA  400

seq1  GTAATTGGCCCCATGCCACCACCATTCCTTTGTCCAGACAGCAGGAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGGCCCCATGCCACCACCATTCCTTTGTCCAGACAGCAGGAAGGA  450

seq1  TCATCCTGGCACCTCTGTTCCTTTAAGAAGGAAGAGGCTGCCTTTGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGGCACCTCTGTTCCTTTAAGAAGGAAGAGGCTGCCTTTGGCAA  500

seq1  TGTATGGCAGGCTTTCCTTGCATTCACTAGAAATGAATTCAAAATTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGCAGGCTTTCCTTGCATTCACTAGAAATGAATTCAAAATTTCTT  550

seq1  TTTTATTCCTGAAGTCATTAATTTATCCCAAGAAGTGACAGACTAGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCCTGAAGTCATTAATTTATCCCAAGAAGTGACAGACTAGTATT  600

seq1  GTCTCACATCAAAGATACAGTCTCTTCCCAACAGCTTATCAGCTGGCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACATCAAAGATACAGTCTCTTCCCAACAGCTTATCAGCTGGCCCC  650

seq1  AAACCTTTAACACCCAGGGCCTTAGGGTTGTTTCAGGTTGGAATTATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTAACACCCAGGGCCTTAGGGTTGTTTCAGGTTGGAATTATGAT  700

seq1  ATGAGGTTTAAATGCAGAACTATGATCCCTGGCTTTTCTGTTCTATTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTTTAAATGCAGAACTATGATCCCTGGCTTTTCTGTTCTATTTCT  750

seq1  ATACAGTTGGGGTCACTTATATATACTATCATATCATCTGCAAATAGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTGGGGTCACTTATATATACTATCATATCATCTGCAAATAGTGA  800

seq1  TATTTTGACTTCTTCCTTTCCAATTTATATCCCCTTGGTCTTCTTTTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGACTTCTTCCTTTCCAATTTATATCCCCTTGGTCTTCTTTTGTT  850

seq1  GTCTAATTGCTCTGGCTAGAACTTCAAGTACTATATTAAACTGGTAGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATTGCTCTGGCTAGAACTTCAAGTACTATATTAAACTGGTAGGGA  900

seq1  GAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTTAGTGGCATTGCTTCCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTTAGTGGCATTGCTTCCAG  950

seq1  CTTCTCTCCATTTAGTTTGCTGTTGGGTACTGCTAATCAGCAGTAGATTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCCATTTAGTTTGCTGTTGGGTACTGCTAATCAGCAGTAGATTG  1000

seq1  CTTTTA  1006
      ||||||
seq2  CTTTTA  1006


seq1: chr18_85420966_85421923
seq2: B6Ng01-280D09.g_70_1024 (reverse)

seq1  AACAATCTGGAGAAAACTCTGAATTTAAAACAGTTTTTAAAGAGACTCAT  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AACAATCTGGAGAAAACTCTGAATTT-AAACAGTTTTTAAAGAGACTCAT  49

seq1  TTCCACAGGCAACTTTGGCATTGTCTAGGAAAAAAAATTCCTGAGAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCCACAGGCAACTTTGGCATTGTCTAGGAAAAAAAATTCC-GAGAGTTC  98

seq1  AATTTAAGATCTGTAAAAGTGAACTGGGTAGTGAGTCCCAAAAGTCAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGATCTGTAAAAGTGAACTGGGTAGTGAGTCCCAAAAGTCAGAC  148

seq1  AGTCAGTGGGGAGAGCTGGTCCTGAGGGAGGGGGTGTGTGAGCCTGGAAT  200
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTCAGTGGGGAGAGCTGGT-CTGAGGGAGGGGGTGTGTGAGCCTGGAAT  197

seq1  AGTAGTCCTTCTGCTCTGTGACTGGAAAAATATCTTTCAATTAGCATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCCTTCTGCTCTGTGACTGGAAAAATATCTTTCAATTAGCATGGA  247

seq1  GAGTGTCCTATCAAGAAAGCTTGAGTGGGTCATGAGAGTGTGGGAGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCCTATCAAGAAAGCTTGAGTGGGTCATGAGAGTGTGGGAGAGGA  297

seq1  CATGAGGTGCTGAGATCCTGCCTCAGCATGAGGAAGGTCCTGAGAAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGTGCTGAGATCCTGCCTCAGCATGAGGAAGGTCCTGAGAAGACC  347

seq1  CTAATCTAATATTGACTCAGTCAATGAATGCAAGCTGTCAACTCAAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTAATATTGACTCAGTCAATGAATGCAAGCTGTCAACTCAAGTGC  397

seq1  TCTCTCTCTTTGCCCAAAGATTCTCACCATACTTCCTTCTCCTTTCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTTTGCCCAAAGATTCTCACCATACTTCCTTCTCCTTTCTTCC  447

seq1  TTCTTCTGCCTTCTCCCAACCAGACAGCCTTAACTGACTCTTTTATCGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGCCTTCTCCCAACCAGACAGCCTTAACTGACTCTTTTATCGAC  497

seq1  TAAAGTTACATAAACAAGTCTTTGGTAATTATTAGTAATTATTCTAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTACATAAACAAGTCTTTGGTAATTATTAGTAATTATTCTAGAAA  547

seq1  TCCTTAAATTTATGCAACTTCTATGAACCCCAGATCATTAGTCCCAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAATTTATGCAACTTCTATGAACCCCAGATCATTAGTCCCAACCC  597

seq1  CTCCTTCTTTAAAACAGAAGCCAAAAACAAAGCAAAAGCATGGTTCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTTTAAAACAGAAGCCAAAAACAAAGCAAAAGCATGGTTCCTTA  647

seq1  TTGGTTTACACAGCTTGTTCTTCATGGATAGCTGGGCACAGCTCTTATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTACACAGCTTGTTCTTCATGGATAGCTGGGCACAGCTCTTATGG  697

seq1  TTTCCTGGTACAGTAGGCAGCAGTCTTTACTAATGGGTTTCATGTGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGTACAGTAGGCAGCAGTCTTTACTAATGGGTTTCATGTGAAAA  747

seq1  CAGAAAGGTGACAGACTACTAGGGTTAAAAGAATTTCTAATGAAGTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGTGACAGACTACTAGGGTTAAAAGAATTTCTAATGAAGTTTTA  797

seq1  AAATTTATGTAAGTAAAGTTGCTAGCTCTCACTAATATCTCTCTAGCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATGTAAGTAAAGTTGCTAGCTCTCACTAATATCTCTCTAGCCAT  847

seq1  TATCATCTGTAATTCTTCAAGTAACTAGGAGAACAAAGTATTAACTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTGTAATTCTTCAAGTAACTAGGAGAACAAAGTATTAACTTTCT  897

seq1  ATATGCTTATACATCATCCTTTAATTCTTTAATCTTTATTTCTTCATCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTATACATCATCCTTTAATTCTTTAATCTTTATTTCTTCATCCT  947

seq1  AGGAATTC  958
      ||||||||
seq2  AGGAATTC  955


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