BAC Information

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BAC

Clone NameB6Ng01-280L17
Chromosome18 (Build37)
Map Location 50,350,570 - 50,510,963
singlet/doubletdoublet
Overlap geneHsd17b4, LOC667233, Gm93
Upstream geneDtwd2, Dmxl1, Tnfaip8, LOC626721
Downstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280L17.bB6Ng01-280L17.g
ACCGA080386GA080387
length8931,081
definitionB6Ng01-280L17.b B6Ng01-280L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,510,071 - 50,510,963)(50,350,570 - 50,351,649)
sequence
gaattcagaagaccactttatcaagttggtcccctccgtccacctttaca
ggaatttcaaggatgaattctgacctccagacctgcccacacatgtcttt
acccggtgagccatcatgctggctcatgatcctatccttcgtacctgaat
atcaacttcaattgtagcacaatccacaacagaatttcatactctgggtg
tccaggtttcatgtcttcttcttaaattttgttcatcatgacaggtaaaa
tctggtgttaatctttttctcttaatgttctttgttgagaagtgtgttca
ctgagaaacaacttctctctctgctttgtagatagctcctttttttctca
atagtgaacacactgtgccaagggatatgtcaagtttattttatcttctt
tgggtgtttgaagttctggtaaaaagaccaactacccaggggcaccacct
tctctggtggagttctatgctgtgagcttagatgaatggaacctatttaa
aagcatcactaatgggtttctcatgaaaagatcctttcagtattaaaggt
tttaaattttattttaaaacttttcttttttaaagtgattaacgttctat
tctatcagagaaatggttgttgaaaataaaagaatcatttgtgatgcttg
gagttgggagcaggtgttttgttttactttgctttgatttttttgtcttc
attccccaattcccacccctacacagcaggggtaaccaattacttcatct
tttttttttttttaatttttgttagttcagaatttcactcagtggagtta
gttcattttctcccgattttgtgtcctttaggaaaaggtccttttgctca
atgtaggggatgccaggacagggaagtgggagtgggtgggttg

gaattctctgtgctatgtgtgagttcatgtgctttgtgatttgttttgtc
ttttatttgtattattttttttgtttgtttgtttttgagaaagagaaaga
ccatggtatgggtaaggatgtgggagaggaaaaacatgatattgtatgaa
aaatacttaagaataaaattatgatacattatgatttatttgtgaataac
tggagtgttattcaaatttagttttaaaatcttgctagtcaggtgtcaga
acctttgatgaatcaggcgttagaaaggttggagaacattatgagctcca
agcagcctcacatgctactgggctaagattcttggctgactgcactttca
aggccttagttacacacactgcagcaacttcacgtcctttagtaacttgt
tctatatttagctcatatttatatacatatttctatcacatgagattctt
cattaagaaagaaactatgattgacttggctgttctgaagaactagcatc
tagaagtagaagtagcacctagaagaagatttacaagctccccctgatag
aacacgctgcaggaggattgctgcgagttgaagctcagtcttgcttaccg
catgacatcctgccttggccaacaaagaagacaaaacttttctaaatgac
agaatgtacgtgttctagaagtaggagcatagaatatacgggcattgcct
aacttggaacctagagcagtttccatggtgtgtagcttttttgtgctgtg
atatttttgaggaaacagtggcctgcattgttttcttgttttcccagcca
ttgacctgaagagcggctcaggggaggtgtaccaaggccccgcaaagggc
tctgctgatgtgaccatcatcatttccgatgaggattttatgggaggtgg
tcttcggcaagctttgaccacaggaaggtaatgccagtaccattttctat
ttacaaggttatattgatattcctgattagcaagtcctatttttaaaatg
actattcagttatatttttccaaagatttttaagtgggtctaattcctgg
tttacatttacctagaccattataaacctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_50510071_50510963
seq2: B6Ng01-280L17.b_49_941 (reverse)

seq1  CAACCCACCCACTCCCACTTCCCTGTCCTGGCATCCCCTACATTGAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCACCCACTCCCACTTCCCTGTCCTGGCATCCCCTACATTGAGCAA  50

seq1  AAGGACCTTTTCCTAAAGGACACAAAATCGGGAGAAAATGAACTAACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCTTTTCCTAAAGGACACAAAATCGGGAGAAAATGAACTAACTCC  100

seq1  ACTGAGTGAAATTCTGAACTAACAAAAATTAAAAAAAAAAAAAAGATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTGAAATTCTGAACTAACAAAAATTAAAAAAAAAAAAAAGATGAA  150

seq1  GTAATTGGTTACCCCTGCTGTGTAGGGGTGGGAATTGGGGAATGAAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGGTTACCCCTGCTGTGTAGGGGTGGGAATTGGGGAATGAAGACA  200

seq1  AAAAAATCAAAGCAAAGTAAAACAAAACACCTGCTCCCAACTCCAAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCAAAGCAAAGTAAAACAAAACACCTGCTCCCAACTCCAAGCAT  250

seq1  CACAAATGATTCTTTTATTTTCAACAACCATTTCTCTGATAGAATAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGATTCTTTTATTTTCAACAACCATTTCTCTGATAGAATAGAAC  300

seq1  GTTAATCACTTTAAAAAAGAAAAGTTTTAAAATAAAATTTAAAACCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCACTTTAAAAAAGAAAAGTTTTAAAATAAAATTTAAAACCTTTA  350

seq1  ATACTGAAAGGATCTTTTCATGAGAAACCCATTAGTGATGCTTTTAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAAAGGATCTTTTCATGAGAAACCCATTAGTGATGCTTTTAAATA  400

seq1  GGTTCCATTCATCTAAGCTCACAGCATAGAACTCCACCAGAGAAGGTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCATTCATCTAAGCTCACAGCATAGAACTCCACCAGAGAAGGTGGT  450

seq1  GCCCCTGGGTAGTTGGTCTTTTTACCAGAACTTCAAACACCCAAAGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGGGTAGTTGGTCTTTTTACCAGAACTTCAAACACCCAAAGAAGA  500

seq1  TAAAATAAACTTGACATATCCCTTGGCACAGTGTGTTCACTATTGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAACTTGACATATCCCTTGGCACAGTGTGTTCACTATTGAGAAA  550

seq1  AAAAGGAGCTATCTACAAAGCAGAGAGAGAAGTTGTTTCTCAGTGAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGCTATCTACAAAGCAGAGAGAGAAGTTGTTTCTCAGTGAACAC  600

seq1  ACTTCTCAACAAAGAACATTAAGAGAAAAAGATTAACACCAGATTTTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCAACAAAGAACATTAAGAGAAAAAGATTAACACCAGATTTTACC  650

seq1  TGTCATGATGAACAAAATTTAAGAAGAAGACATGAAACCTGGACACCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGATGAACAAAATTTAAGAAGAAGACATGAAACCTGGACACCCAG  700

seq1  AGTATGAAATTCTGTTGTGGATTGTGCTACAATTGAAGTTGATATTCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAAATTCTGTTGTGGATTGTGCTACAATTGAAGTTGATATTCAGG  750

seq1  TACGAAGGATAGGATCATGAGCCAGCATGATGGCTCACCGGGTAAAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAAGGATAGGATCATGAGCCAGCATGATGGCTCACCGGGTAAAGACA  800

seq1  TGTGTGGGCAGGTCTGGAGGTCAGAATTCATCCTTGAAATTCCTGTAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGCAGGTCTGGAGGTCAGAATTCATCCTTGAAATTCCTGTAAAG  850

seq1  GTGGACGGAGGGGACCAACTTGATAAAGTGGTCTTCTGAATTC  893
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACGGAGGGGACCAACTTGATAAAGTGGTCTTCTGAATTC  893


seq1: chr18_50350570_50351649
seq2: B6Ng01-280L17.g_67_1147

seq1  GAATTCTCTGTGCTATGTGTGAGTTCATGTGCTTTGTGATTTGTTTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGCTATGTGTGAGTTCATGTGCTTTGTGATTTGTTTTGTC  50

seq1  TTTTATTTGTATTATTTTTTTTGTTTGTTTGTTTTTGAGAAAGAGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTGTATTATTTTTTTTGTTTGTTTGTTTTTGAGAAAGAGAAAGA  100

seq1  CCATGGTATGGGTAAGGATGTGGGAGAGGAAAAACATGATATTGTATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTATGGGTAAGGATGTGGGAGAGGAAAAACATGATATTGTATGAA  150

seq1  AAATACTTAAGAATAAAATTATGATACATTATGATTTATTTGTGAATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTAAGAATAAAATTATGATACATTATGATTTATTTGTGAATAAC  200

seq1  TGGAGTGTTATTCAAATTTAGTTTTAAAATCTTGCTAGTCAGGTGTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTTATTCAAATTTAGTTTTAAAATCTTGCTAGTCAGGTGTCAGA  250

seq1  ACCTTTGATGAATCAGGCGTTAGAAAGGTTGGAGAACATTATGAGCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGATGAATCAGGCGTTAGAAAGGTTGGAGAACATTATGAGCTCCA  300

seq1  AGCAGCCTCACATGCTACTGGGCTAAGATTCTTGGCTGACTGCACTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTCACATGCTACTGGGCTAAGATTCTTGGCTGACTGCACTTTCA  350

seq1  AGGCCTTAGTTACACACACTGCAGCAACTTCACGTCCTTTAGTAACTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTAGTTACACACACTGCAGCAACTTCACGTCCTTTAGTAACTTGT  400

seq1  TCTATATTTAGCTCATATTTATATACATATTTCTATCACATGAGATTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTTAGCTCATATTTATATACATATTTCTATCACATGAGATTCTT  450

seq1  CATTAAGAAAGAAACTATGATTGACTTGGCTGTTCTGAAGAACTAGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGAAAGAAACTATGATTGACTTGGCTGTTCTGAAGAACTAGCATC  500

seq1  TAGAAGTAGAAGTAGCACCTAGAAGAAGATTTACAAGCTCCCCCTGATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTAGAAGTAGCACCTAGAAGAAGATTTACAAGCTCCCCCTGATAG  550

seq1  AACACGCTGCAGGAGGATTGCTGCGAGTTGAAGCTCAGTCTTGCTTACCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGCTGCAGGAGGATTGCTGCGAGTTGAAGCTCAGTCTTGCTTACCG  600

seq1  CATGACATCCTGCCTTGGCCAACAAAGAAGACAAAACTTTTCTAAATGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACATCCTGCCTTGGCCAACAAAGAAGACAAAACTTTTCTAAATGAC  650

seq1  AGAATGTACGTGTTCTAGAAGTAGGAGCATAGAATATACGGGCATTGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTACGTGTTCTAGAAGTAGGAGCATAGAATATACGGGCATTGCCT  700

seq1  AACTTGGAACCTAGAGCAGTTTCCATGGTGTGTAGCTTTTTTGTGCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGAACCTAGAGCAGTTTCCATGGTGTGTAGCTTTTTTGTGCTGTG  750

seq1  ATATTTTTGAGGAAACAGTGGCCTGCATTGTTTTCTTGTTTT-CCAGCCA  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATATTTTTGAGGAAACAGTGGCCTGCATTGTTTTCTTGTTTTCCCAGCCA  800

seq1  TTGACCTGAAGAGCGGCTCAGGGGAGGTGTACCAAGGCCCCGCAAAGGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTGAAGAGCGGCTCAGGGGAGGTGTACCAAGGCCCCGCAAAGGGC  850

seq1  TCTGCTGATGTGACCATCATCATTTCCGATGAGGATTTTAT-GGAAGTGG  898
      ||||||||||||||||||||||||||||||||||||||||| ||| ||||
seq2  TCTGCTGATGTGACCATCATCATTTCCGATGAGGATTTTATGGGAGGTGG  900

seq1  TCTTCGGCAAGCTTGACCCACA-GAAGGTAATGCCAGTAACA-TTTCTAT  946
      ||||||||||||||   ||||| |||||||||||||||| || |||||||
seq2  TCTTCGGCAAGCTTTGACCACAGGAAGGTAATGCCAGTACCATTTTCTAT  950

seq1  TTACAAAGTTTATATTGAATATT-CTGATTAGCAAGTCATATTTTTAAAA  995
      |||| ||| |||||||| ||||| |||||||||||||| |||||||||||
seq2  TTAC-AAGGTTATATTG-ATATTCCTGATTAGCAAGTCCTATTTTTAAAA  998

seq1  TGACTATTTCAGTTAATATTTTTCAAAAGATTTTTTAGTGGGTCTAATTC  1045
      |||||| ||||||| ||||||||| |||||||||| ||||||||||||||
seq2  TGACTA-TTCAGTT-ATATTTTTCCAAAGATTTTTAAGTGGGTCTAATTC  1046

seq1  CTGTTTACCATTTA-CTAAAACAATATAAAACCTAC  1080
      ||| ||  |||||| ||| | || ||| ||||||||
seq2  CTGGTTTACATTTACCTAGACCATTAT-AAACCTAC  1081


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