BAC Information

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BAC

Clone NameB6Ng01-280N04
Chromosome18 (Build37)
Map Location 51,119,041 - 51,277,972
singlet/doubletdoublet
Overlap geneLOC100042385, Prr16
Upstream geneDmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373
Downstream geneEG240289
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280N04.bB6Ng01-280N04.g
ACCGA080455GA080456
length8031,126
definitionB6Ng01-280N04.b B6Ng01-280N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,277,176 - 51,277,972)(51,119,041 - 51,120,170)
sequence
gaattcatcaattaaaacactagttgatttctgtctgattaaaaacgaga
gagagaaagtgctccaactcttctcacgagtagcccgggcaaagaaagtc
agtctgcaggcatccctccatagttaccaggagtttggaaatgctgtagt
cccaagtcaaaagggggaccggaacccacccaaggggcgcggggagcccc
actccctcccccacacccgcgcctctcacctccttaagttctttggccac
gtccttcaggtcgcccaggactaattccagatcctccactatgatcttga
tctgctccttcaccttggttttggaggctgccggcggtccctcggctgcg
gaggacgaggaggggttccccttggacttggctgacattcttcggtgggg
cgagcaagccaggtcaggacaggcgagcgagcggaggttgctgcgcgccc
gggtccctggcgctgctccggccgctcccaccccagtccccccacatgtc
gactgctcggcgggcagccgcgggtggctgcgcggtgcgctcggcccggc
ggccgcactgtggtgctgccatcaactccccgagacgaggcgctcggcgc
ggggctgcagacgggcgagcagcgcgcctgcgcctcctcccgccgccgcc
cgctgctcgcgcgcacactcgcgggtggagaggggctgcgcgggcgccgc
ccgggggctgtcagctgcaccgcccctgggtacatcctgctggggtctct
ccccagacctcttctgaagcgtcatggtgccccgggggacaagtttgcaa
gtt
gaattcaacttataagaagaagccaatatataataaacaatatgtttcat
gttaggaatacaattaaaatattttccactcaagttatttttgcccatag
aacatttatggaatctacagtatctaggtacataaaataggtctaaaacc
aaacatttatttttatgttttatggagacagcaaaataccttgagcattc
ttgaaatagaaagaacatacatgtatccttagctaaagtaagcaagcaca
ctagtggaaaattgttgctcgtctctacagctataggatatagcctacta
aaactgcttcctggaaattcagattcttcagaatatgctgttctttgctc
taatgtcagcatagaccttggctcttaattatctccaatatgcctaacag
caattccaaaggctctaaatgcaatcagaatgcatacgtaatgaacttgc
cagagatacttgtctgatgtagattaagtgcaatgcaaatgtgaaagatg
aagacttaaaagaatgaacatgggaagttagttaagagcgcccatgtcat
tgctgattttcctgttatatgtgcttcagattaaataaatgaaatcagtt
ttgcttagctatgcagctactagggagatggaaatgaaatcataaatctg
ggaagggcacaaaactcagtaagacacattgttgagttcaattgtgaaat
gagttttaattacaaacatcaggacactacttatttcataacctgatgga
tattttcaaagttctacacctaagggcagtcagcatatctgtgtggtttt
aaggattgtaaaaatgcctgcatatcatgtgagaacagcaaaaactgcaa
tgaaagaacaaggtattttatccagagatgtactttcatcttggatcaat
tacttttagtgtgacattaatttgagatatttgggtttctttacctacag
atgagaatagcaatgtacagactatagtgttgttacattattaaaagata
catgactaaaatatgatgtaatgttttgttttttacagttaactctcatg
gtggggtgtagctcagtggaacagcctgggcttatgcaagctccggtttc
attccaacacattagtatgaataaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51277176_51277972
seq2: B6Ng01-280N04.b_46_848 (reverse)

seq1  AACTTGCAAACTTGTCCCC--GGGCACCATGACGCTTCCGAAGAGGTCT-  47
      |||||||||||||||||||  ||||||||||||||||| |||||||||| 
seq2  AACTTGCAAACTTGTCCCCCGGGGCACCATGACGCTTCAGAAGAGGTCTG  50

seq1  GGGAGAGACCCCAGCAGGATGTACCCA-GGGCGGTGCAGCTGACAGCCCC  96
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGGAGAGACCCCAGCAGGATGTACCCAGGGGCGGTGCAGCTGACAGCCCC  100

seq1  C-GGCGGCG-CCGCGCAGCCCCTCTCCACCCGCGAGTGTGCGCGCGAGCA  144
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCGGCGCCCGCGCAGCCCCTCTCCACCCGCGAGTGTGCGCGCGAGCA  150

seq1  GCGGGCGGCGGCGGGAGGAGGCGCAGGCGCGCTGCTCGCCCGTCTGCAGC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCGGCGGCGGGAGGAGGCGCAGGCGCGCTGCTCGCCCGTCTGCAGC  200

seq1  CCCGCGCCGAGCGCCTCGTCTCGGGGAGTTGATGGCAGCACCACAGTGCG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCGCCGAGCGCCTCGTCTCGGGGAGTTGATGGCAGCACCACAGTGCG  250

seq1  GCCGCCGGGCCGAGCGCACCGCGCAGCCACCCGCGGCTGCCCGCCGAGCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCGGGCCGAGCGCACCGCGCAGCCACCCGCGGCTGCCCGCCGAGCA  300

seq1  GTCGACATGTGGGGGGACTGGGGTGGGAGCGGCCGGAGCAGCGCCAGGGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGACATGTGGGGGGACTGGGGTGGGAGCGGCCGGAGCAGCGCCAGGGA  350

seq1  CCCGGGCGCGCAGCAACCTCCGCTCGCTCGCCTGTCCTGACCTGGCTTGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGCGCGCAGCAACCTCCGCTCGCTCGCCTGTCCTGACCTGGCTTGC  400

seq1  TCGCCCCACCGAAGAATGTCAGCCAAGTCCAAGGGGAACCCCTCCTCGTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCCCACCGAAGAATGTCAGCCAAGTCCAAGGGGAACCCCTCCTCGTC  450

seq1  CTCCGCAGCCGAGGGACCGCCGGCAGCCTCCAAAACCAAGGTGAAGGAGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCAGCCGAGGGACCGCCGGCAGCCTCCAAAACCAAGGTGAAGGAGC  500

seq1  AGATCAAGATCATAGTGGAGGATCTGGAATTAGTCCTGGGCGACCTGAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGATCATAGTGGAGGATCTGGAATTAGTCCTGGGCGACCTGAAG  550

seq1  GACGTGGCCAAAGAACTTAAGGAGGTGAGAGGCGCGGGTGTGGGGGAGGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGGCCAAAGAACTTAAGGAGGTGAGAGGCGCGGGTGTGGGGGAGGG  600

seq1  AGTGGGGCTCCCCGCGCCCCTTGGGTGGGTTCCGGTCCCCCTTTTGACTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGCTCCCCGCGCCCCTTGGGTGGGTTCCGGTCCCCCTTTTGACTT  650

seq1  GGGACTACAGCATTTCCAAACTCCTGGTAACTATGGAGGGATGCCTGCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTACAGCATTTCCAAACTCCTGGTAACTATGGAGGGATGCCTGCAG  700

seq1  ACTGACTTTCTTTGCCCGGGCTACTCGTGAGAAGAGTTGGAGCACTTTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTTCTTTGCCCGGGCTACTCGTGAGAAGAGTTGGAGCACTTTCT  750

seq1  CTCTCTCGTTTTTAATCAGACAGAAATCAACTAGTGTTTTAATTGATGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCGTTTTTAATCAGACAGAAATCAACTAGTGTTTTAATTGATGAA  800

seq1  TTC  797
      |||
seq2  TTC  803

seq1: chr18_51119041_51120170
seq2: B6Ng01-280N04.g_69_1194

seq1  GAATTCAACTTATAAGAAGAAGCCAATATATAATAAACAATATGTTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTATAAGAAGAAGCCAATATATAATAAACAATATGTTTCAT  50

seq1  GTTAGGAATACAATTAAAATATTTTCCACTCAAGTTATTTTTGCCCATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAATACAATTAAAATATTTTCCACTCAAGTTATTTTTGCCCATAG  100

seq1  AACATTTATGGAATCTACAGTATCTAGGTACATAAAATAGGTCTAAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTATGGAATCTACAGTATCTAGGTACATAAAATAGGTCTAAAACC  150

seq1  AAACATTTATTTTTATGTTTTATGGAGACAGCAAAATACCTTGAGCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTATTTTTATGTTTTATGGAGACAGCAAAATACCTTGAGCATTC  200

seq1  TTGAAATAGAAAGAACATACATGTATCCTTAGCTAAAGTAAGCAAGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAGAAAGAACATACATGTATCCTTAGCTAAAGTAAGCAAGCACA  250

seq1  CTAGTGGAAAATTGTTGCTCGTCTCTACAGCTATAGGATATAGCCTACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGAAAATTGTTGCTCGTCTCTACAGCTATAGGATATAGCCTACTA  300

seq1  AAACTGCTTCCTGGAAATTCAGATTCTTCAGAATATGCTGTTCTTTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTTCCTGGAAATTCAGATTCTTCAGAATATGCTGTTCTTTGCTC  350

seq1  TAATGTCAGCATAGACCTTGGCTCTTAATTATCTCCAATATGCCTAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCAGCATAGACCTTGGCTCTTAATTATCTCCAATATGCCTAACAG  400

seq1  CAATTCCAAAGGCTCTAAATGCAATCAGAATGCATACGTAATGAACTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCAAAGGCTCTAAATGCAATCAGAATGCATACGTAATGAACTTGC  450

seq1  CAGAGATACTTGTCTGATGTAGATTAAGTGCAATGCAAATGTGAAAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATACTTGTCTGATGTAGATTAAGTGCAATGCAAATGTGAAAGATG  500

seq1  AAGACTTAAAAGAATGAACATGGGAAGTTAGTTAAGAGCGCCCATGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTAAAAGAATGAACATGGGAAGTTAGTTAAGAGCGCCCATGTCAT  550

seq1  TGCTGATTTTCCTGTTATATGTGCTTCAGATTAAATAAATGAAATCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATTTTCCTGTTATATGTGCTTCAGATTAAATAAATGAAATCAGTT  600

seq1  TTGCTTAGCTATGCAGCTACTAGGGAGATGGAAATGAAATCATAAATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAGCTATGCAGCTACTAGGGAGATGGAAATGAAATCATAAATCTG  650

seq1  GGAAGGGCACAAAACTCAGTAAGACACATTGTTGAGTTCAATTGTGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCACAAAACTCAGTAAGACACATTGTTGAGTTCAATTGTGAAAT  700

seq1  GAGTTTTAATTACAAACATCAGGACACTACTTATTTCATAACCTGATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTAATTACAAACATCAGGACACTACTTATTTCATAACCTGATGGA  750

seq1  TATTTTCAAAGTTCTACACCTAAGGGCAGTCAGCATATCTGTGTGGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAAAGTTCTACACCTAAGGGCAGTCAGCATATCTGTGTGGTTTT  800

seq1  AAGGATTGTAAAAATGCCTGCATATCATGTGAGAACAGCAAAAACTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTGTAAAAATGCCTGCATATCATGTGAGAACAGCAAAAACTGCAA  850

seq1  TGAAAGAACAAGGTATTTTATCCAGAGATGTACTTTCATCTTGGATCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAACAAGGTATTTTATCCAGAGATGTACTTTCATCTTGGATCAAT  900

seq1  TACTTTTAGTGTGACATTAATTTGAGATATTT-GGTTTCTTTACCTACAA  949
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  TACTTTTAGTGTGACATTAATTTGAGATATTTGGGTTTCTTTACCTAC-A  949

seq1  GATGAGAATAGCAATGTACAGACTATAGTGTTGTTACAATTATTAAAAGA  999
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATGAGAATAGCAATGTACAGACTATAGTGTTGTTAC-ATTATTAAAAGA  998

seq1  TACATGACTAAAATATTGAATGTAATGTTT--GTTTTTACAGTTAACTCT  1047
      ||||||||||||||||   |||||||||||   |||||||||||||||||
seq2  TACATGACTAAAATAT--GATGTAATGTTTTGTTTTTTACAGTTAACTCT  1046

seq1  CATTGTGGGGTGTAGCTCAGTGGAACAGCCTTGGCTTATGCAAGGCTCCG  1097
      ||| ||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  CATGGTGGGGTGTAGCTCAGTGGAACAGCCTGGGCTTATGCAA-GCTCCG  1095

seq1  TTTTCAATCCCAACACATTTAGGTATG-ATAAAG  1130
       |||| || ||||||||||   ||||| ||||||
seq2  GTTTC-ATTCCAACACATT--AGTATGAATAAAG  1126