BAC Information

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BAC

Clone NameB6Ng01-281B04
Chromosome18 (Build37)
Map Location 89,047,399 - 89,159,383
singlet/doubletdoublet
Overlap geneSocs6, Rttn
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208
Downstream geneCd226, Dok6, LOC383320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281B04.bB6Ng01-281B04.g
ACCGA080642GA080643
length9301,105
definitionB6Ng01-281B04.b B6Ng01-281B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,047,399 - 89,048,331)(89,158,264 - 89,159,383)
sequence
gaattcactatgtacactaggtggattggtctgcctctgcctcccagagt
gctgggattaaaagcaggcatcatcacagatagcatactttcttgattga
tgttgcaggcccaaactattctgtgtgtagggccaactctgagtaagtag
tactgatttatatagaaagtatgcagagcaagccagtaagtagccttcct
acattgtttctgcttcagttactgccttcattttcctgtctcgagttcct
atcttggcttctctcaatgggttgtaaaccaggatatgtaagccaaataa
accctttcttctccaagctgcttttggccataatgtttcataatagcata
gatttctctaacatggaatgatgcctatcacttaaagaataggatacaaa
agaatacacccaagaaagtagccaagagacgtaaaatagcttaattaata
tcagacaaaataggctttaaggagccttgcagggcagtggtggcacatgc
ctttaatctcagcacttgggaggcagaggcaggcggatctctgagttcga
ggccagcctggactacagagtgagttccaggacagccagggctacacaga
gaaacactgtctcaaaaaagcaaaaaaacaaaaacaaaacaaaataggct
ttaagatagtaaatactagtagggacaaagaacagacattttaaaatgaa
aagaaggttaatatatcatgaagatatagtaacaataaatgcatacacac
ttgacattaacccccccaaatacataaacaaaggtgtaaaagaaatgaca
atttaataataatacataaaattttcaataaaggcagctcctagtatatt
gatagacacagtttcctgagtttccctgagttcaatcaatccccaatgtg
aaaggggagggaaaagagaggggagaggaa

gaattccttcaactaacattaaagaatatatcaactgtatgtcttaaggt
ttaaatttactctaactaaaaaacaaacaaacaaaaagattgggaaacac
tgtgctggtatagctattatcaagctaacatacatatgcaaacaactcga
gttaatcattttcttcttggtatgaactaataatttctttgagcaaaagc
acaagaaaattttaaaattaaaacacagcaaatataaacccatgaattag
atatcacagtattttatagaagcaggggtatcatgacagctatcataccc
attggccttttactgatctagacctgtctctattagtgtaaaccaaacca
ctaaggaaaagattcactcagatatgcatacaacatgtattctgtcataa
agtaaaacctactataccctaaagaagataatgactctcaccacattgat
agcaaaaaggctgttatcatcccagatttctgatgaaattgcttgtccaa
tgagcagcatgtcctctgcaagcagttccagaactcttattatcatttct
ctgctgcctagacataaaaatgggagaagcacaagggaaaacaaagttac
ttgattttcagttaattagctggaccctctagctaggcatgtttccaaat
tcttatttccccatccttggtgtttttaaactgctaacagagatgaataa
ggaagttacaatctcactgtaacagaccaaatgtgctcataagtgtcaaa
gttacttgaaagtagaaattactaaaaagagtctggagagatggttcagt
gattaagagcactgtctgccctcttctggtatgtctgaagacagctacag
tgtactcatataaataaatcttttttaaaaaagaaagaaagagagagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagagagagagagagagagagagagagagagagagagagagagagctaaa
atacctgaaacagatttagcatttcaaatagagacatccatgttatatac
tatatggaacaaacagcagttagagaaacacatctgttagattggttgtt
gtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89047399_89048331
seq2: B6Ng01-281B04.b_46_975

seq1  GAATTCACTATGTACACTAGGTGGATTGGTCTGCCTCTGCCTCCCAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTACACTAGGTGGATTGGTCTGCCTCTGCCTCCCAGAGT  50

seq1  GCTGGGATTAAAAGCAGGCATCATCACAGATAGCATACTTTCTTGATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAAGCAGGCATCATCACAGATAGCATACTTTCTTGATTGA  100

seq1  TGTTGCAGGCCCAAACTATTCTGTGTGTAGGGCCAACTCTGAGTAAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCAGGCCCAAACTATTCTGTGTGTAGGGCCAACTCTGAGTAAGTAG  150

seq1  TACTGATTTATATAGAAAGTATGCAGAGCAAGCCAGTAAGTAGCCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATTTATATAGAAAGTATGCAGAGCAAGCCAGTAAGTAGCCTTCCT  200

seq1  ACATTGTTTCTGCTTCAGTTACTGCCTTCATTTTCCTGTCTCGAGTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTTTCTGCTTCAGTTACTGCCTTCATTTTCCTGTCTCGAGTTCCT  250

seq1  ATCTTGGCTTCTCTCAATGGGTTGTAAACCAGGATATGTAAGCCAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGCTTCTCTCAATGGGTTGTAAACCAGGATATGTAAGCCAAATAA  300

seq1  ACCCTTTCTTCTCCAAGCTGCTTTTGGCCATAATGTTTCATAATAGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTCTTCTCCAAGCTGCTTTTGGCCATAATGTTTCATAATAGCATA  350

seq1  GATTTCTCTAACATGGAATGATGCCTATCACTTAAAGAATAGGATACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCTAACATGGAATGATGCCTATCACTTAAAGAATAGGATACAAA  400

seq1  AGAATACACCCAAGAAAGTAGCCAAGAGACGTAAAATAGCTTAATTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACACCCAAGAAAGTAGCCAAGAGACGTAAAATAGCTTAATTAATA  450

seq1  TCAGACAAAATAGGCTTTAAGGAGCCTTGCAGGGCAGTGGTGGCACATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAAAATAGGCTTTAAGGAGCCTTGCAGGGCAGTGGTGGCACATGC  500

seq1  CTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGCGGATCTCTGAGTTCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGCGGATCTCTGAGTTCGA  550

seq1  GGCCAGCCTGGACTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGACTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGA  600

seq1  GAAACACTGTCTCAAAAAAGCAAAAAAACAAAAACAAAACAAAATAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTGTCTCAAAAAAGCAAAAAAACAAAAACAAAACAAAATAGGCT  650

seq1  TTAAGATAGTAAATACTAGTAGGGACAAAGAACAGACATTTTAAAATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATAGTAAATACTAGTAGGGACAAAGAACAGACATTTTAAAATGAA  700

seq1  AAGAAGGTTAATATATCATGAAGATATAGTAACAATAAATGCATACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGTTAATATATCATGAAGATATAGTAACAATAAATGCATACACAC  750

seq1  TTGACATTAACCCCCCCAAATACATAAACAAAGGTGTAAAAGAAATGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTAACCCCCCCAAATACATAAACAAAGGTGTAAAAGAAATGACA  800

seq1  ATTTAATAATAATACATAAAATTTTCAAT-AAGGCAGGCTCCTAGTATAT  849
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  ATTTAATAATAATACATAAAATTTTCAATAAAGGCA-GCTCCTAGTATAT  849

seq1  TGATAGACACAGTTTCCTGAGTTTCCCTGAGTTCAATCAATCCCCAATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGACACAGTTTCCTGAGTTTCCCTGAGTTCAATCAATCCCCAATGT  899

seq1  GAAGGGGGAGGGGAAAAGAGAGGGAGAGAAGGAA  933
      ||| ||||| |||||||||||||| ||| |||||
seq2  GAAAGGGGA-GGGAAAAGAGAGGG-GAG-AGGAA  930


seq1: chr18_89158264_89159383
seq2: B6Ng01-281B04.g_69_1173 (reverse)

seq1  AAAACAA----------AACAGAATGTG-TTCTCTAAACTTGCTTGTTTT  39
      |||||||          ||||| ||||| ||||||||   ||||   |||
seq2  AAAACAACAACCAATCTAACAG-ATGTGTTTCTCTAA--CTGCT--GTTT  45

seq1  GTTCCATATAGTATATAACATGGATGGTCTCTTAATTTGAAATTGCTTAA  89
      ||||||||||||||||||||||||| ||||||  |||||||| ||| |||
seq2  GTTCCATATAGTATATAACATGGAT-GTCTCT--ATTTGAAA-TGC-TAA  90

seq1  ATCTGTTTCAGGTATTTTTAGTCTCTTCTCTTCTCTTCTCTTCTCTTCTC  139
      |||||||||||||| |||||| ||| |||| |||| |||| |||| ||||
seq2  ATCTGTTTCAGGTA-TTTTAG-CTC-TCTC-TCTC-TCTC-TCTC-TCTC  133

seq1  TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTCTCT  189
       |||| |||| |||| |||| |||| |||| |||| |||| |||||||||
seq2  -TCTC-TCTC-TCTC-TCTC-TCTC-TCTC-TCTC-TCTC-TCTCTCTCT  174

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCT  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCT  224

seq1  TTTTTAAAAAAGATTTATTTATATGAGTACACTGTAGCTGTCTTCAGACA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAAAGATTTATTTATATGAGTACACTGTAGCTGTCTTCAGACA  274

seq1  TACCAGAAGAGGGCAGACAGTGCTCTTAATCACTGAACCATCTCTCCAGA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAAGAGGGCAGACAGTGCTCTTAATCACTGAACCATCTCTCCAGA  324

seq1  CTCTTTTTAGTAATTTCTACTTTCAAGTAACTTTGACACTTATGAGCACA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTAGTAATTTCTACTTTCAAGTAACTTTGACACTTATGAGCACA  374

seq1  TTTGGTCTGTTACAGTGAGATTGTAACTTCCTTATTCATCTCTGTTAGCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTGTTACAGTGAGATTGTAACTTCCTTATTCATCTCTGTTAGCA  424

seq1  GTTTAAAAACACCAAGGATGGGGAAATAAGAATTTGGAAACATGCCTAGC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAACACCAAGGATGGGGAAATAAGAATTTGGAAACATGCCTAGC  474

seq1  TAGAGGGTCCAGCTAATTAACTGAAAATCAAGTAACTTTGTTTTCCCTTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGTCCAGCTAATTAACTGAAAATCAAGTAACTTTGTTTTCCCTTG  524

seq1  TGCTTCTCCCATTTTTATGTCTAGGCAGCAGAGAAATGATAATAAGAGTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCCCATTTTTATGTCTAGGCAGCAGAGAAATGATAATAAGAGTT  574

seq1  CTGGAACTGCTTGCAGAGGACATGCTGCTCATTGGACAAGCAATTTCATC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTGCTTGCAGAGGACATGCTGCTCATTGGACAAGCAATTTCATC  624

seq1  AGAAATCTGGGATGATAACAGCCTTTTTGCTATCAATGTGGTGAGAGTCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTGGGATGATAACAGCCTTTTTGCTATCAATGTGGTGAGAGTCA  674

seq1  TTATCTTCTTTAGGGTATAGTAGGTTTTACTTTATGACAGAATACATGTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCTTTAGGGTATAGTAGGTTTTACTTTATGACAGAATACATGTT  724

seq1  GTATGCATATCTGAGTGAATCTTTTCCTTAGTGGTTTGGTTTACACTAAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCATATCTGAGTGAATCTTTTCCTTAGTGGTTTGGTTTACACTAAT  774

seq1  AGAGACAGGTCTAGATCAGTAAAAGGCCAATGGGTATGATAGCTGTCATG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGGTCTAGATCAGTAAAAGGCCAATGGGTATGATAGCTGTCATG  824

seq1  ATACCCCTGCTTCTATAAAATACTGTGATATCTAATTCATGGGTTTATAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCTGCTTCTATAAAATACTGTGATATCTAATTCATGGGTTTATAT  874

seq1  TTGCTGTGTTTTAATTTTAAAATTTTCTTGTGCTTTTGCTCAAAGAAATT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGTTTTAATTTTAAAATTTTCTTGTGCTTTTGCTCAAAGAAATT  924

seq1  ATTAGTTCATACCAAGAAGAAAATGATTAACTCGAGTTGTTTGCATATGT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTCATACCAAGAAGAAAATGATTAACTCGAGTTGTTTGCATATGT  974

seq1  ATGTTAGCTTGATAATAGCTATACCAGCACAGTGTTTCCCAATCTTTTTG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGCTTGATAATAGCTATACCAGCACAGTGTTTCCCAATCTTTTTG  1024

seq1  TTTGTTTGTTTTTTAGTTAGAGTAAATTTAAACCTTAAGACATACAGTTG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTTTTAGTTAGAGTAAATTTAAACCTTAAGACATACAGTTG  1074

seq1  ATATATTCTTTAATGTTAGTTGAAGGAATTC  1120
      |||||||||||||||||||||||||||||||
seq2  ATATATTCTTTAATGTTAGTTGAAGGAATTC  1105


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