BAC Information

Click to search

BAC

Clone NameB6Ng01-282E23
Chromosome18 (Build37)
Map Location 52,637,292 - 52,795,500
singlet/doubletdoublet
Overlap geneSrfbp1, Lox, Zfp474
Upstream geneEG240289, Ftmt
Downstream gene1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282E23.bB6Ng01-282E23.g
ACCGA081562GA081563
length8831,151
definitionB6Ng01-282E23.b B6Ng01-282E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,794,630 - 52,795,500)(52,637,292 - 52,638,434)
sequence
gaattccacggagctcctctcctttagtttccatccccattttaatgtac
tattcatatgcctcctgggcaggcgcctaagttctctccaatctctatgc
tcgaagagggagatgggaggaggatcgcagatggaaaaaacagaaccggg
agaggagctctcccgaagacaaggatgttctgtatgagacagggtcattt
tattttgcagtaaatatggtttgctagacgtttcttctagttggagtgtg
gcgcatcctttctctgaacctaccatcctcttcaggatcacctatccagc
catcgaaacatgggcagggtgtggggtagaggtgtgtgagaaagtgaccg
atttagttgtctttttttaattagttattttcttcatttacatttcaaat
gctatccccaaagccccctatatcctctccccaccctgctccccaaccca
cccactcccacttcctggccctggcattcctctgtactggggcatatgat
cttcacaaggctaagggcctctcctcccattgatggccgactaggccaga
cacaagatgatcatgacactatttcaatgaggccaactggtgttttcact
ggcagctgttctccactgtctttaactgcacgagaatacaccttcactct
gaagactgcctctgtagcaagcacaatgaagcctcttaaggttcccactc
caatcatcaactctgtccctctcctgcaggcattttctcatagcaagtga
aaaagcaaatgaggagttaccttagaagctgatctatgggggaggcgagg
agcagtgtataatgttctctgcttgctgacagagaaaccctgttcttgaa
aaacaaaacaaacaaatcaaaaaagccgatgcc
gaattcatacgctctatacacatatttgaattcctggcagacattaaagt
attctgagtttgctagcctgatgttatcttgttgcttcctttagtttttt
ctctcttttgacattaactcaaacatagagttacattgaaatacaaaaac
tcagaataggaatactaagtcaactctatgtttacttagctaaagtgttt
cattttatttacagctcatgtacttttacataatcagccttttctgaaat
aaatatgtttattatttttccaattgaaaggtctttgatcgttttgtaag
gaagtgtttcttgtgcatttgggagacagtacagtagattcacggtccca
attcaatttggaggagaaactctactttgatatttttcaaagggtttttc
cctttggctcatgcaccactaggtttttatagctgtcctccggccatact
gtcttatactctcttgggatgataacagggtatttggttacaagctgcca
tactcatgaagaaaatccatatatttttagaaatgggagtaagttccttt
ttggtcatggctaagcggggcaggggcaaggccaggtctttaagggtctg
tagaatgagaggttctaattttattcactgtaagtatgagccccatcttt
gatgctattgctagtaatattcatacttctaagtgttaatgtacatactg
gcttctgaagcagttctttcttgttgagaggtagcttatgaacctaaaga
cccccaagttatttatctggagacagaaaaacaaaggttgaagctttttg
gggaatgctgggggattgaatccatgtcttggtacttaatcactacccac
taaatcatccatctccagtgcccaccgcctttctcttctcgtttctaggt
ctaagaacttttcattgcactaccattctagttgcaaactctcagccgct
tcagtacggcccatggcgtgtctgctgtcagctttcccagctgtctgttt
tcatgaatcctactataactcaggaaggtgtcttaaggataatgagtcag
cctttctcggctacttttcctgggcaatggagtgatgttctttggcacat
ggatggcctggagtggattttaatggcaaccatttttgaagcctatgttg
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_52794630_52795500
seq2: B6Ng01-282E23.b_45_927 (reverse)

seq1  GGCATC-GCTTTTTTG-TTTGTTTG-TTTGTTTTTCAAG-ACAGGGTTTC  46
      |||||| ||||||||| |||||||| ||||||||||||| ||||||||||
seq2  GGCATCGGCTTTTTTGATTTGTTTGTTTTGTTTTTCAAGAACAGGGTTTC  50

seq1  TCTGTCAGC-AGCAGAG-ACATTATACACTGCTCCTCGCCTTCCCCATAG  94
      ||||||||| ||||||| ||||||||||||||||||||||| ||||||||
seq2  TCTGTCAGCAAGCAGAGAACATTATACACTGCTCCTCGCCTCCCCCATAG  100

seq1  ATCAGCTTCT-AGGTACCTCCTCATTTGC-TTTTCACTTGCTATGAG-AA  141
      |||||||||| ||||| |||||||||||| ||||||||||||||||| ||
seq2  ATCAGCTTCTAAGGTAACTCCTCATTTGCTTTTTCACTTGCTATGAGAAA  150

seq1  ATGCCTGCAGGAGAGGGACAGAGTTGATGATTGGAGTGGGAACCTTAAGA  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGCAGGAGAGGGACAGAGTTGATGATTGGAGTGGGAACCTTAAGA  200

seq1  GGCTTCATTGTGCTTGCTACAGAGGCAGTCTTCAGAGTGAAGGTGTATTC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCATTGTGCTTGCTACAGAGGCAGTCTTCAGAGTGAAGGTGTATTC  250

seq1  TCGTGCAGTT-AAGACAGTGGAGAACAGCTGCCAGTG-AAACACCAGTTG  289
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  TCGTGCAGTTAAAGACAGTGGAGAACAGCTGCCAGTGAAAACACCAGTTG  300

seq1  GCCTCATTG-AATAGTGTCATGATCATCTTGTGTCTGGCCTAGTCGGCCA  338
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTGAAATAGTGTCATGATCATCTTGTGTCTGGCCTAGTCGGCCA  350

seq1  TCAATGGGAGGAGAGGCCCTTAGCCTTGTGAAGATCATATGCCCCAGTAC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGGAGGAGAGGCCCTTAGCCTTGTGAAGATCATATGCCCCAGTAC  400

seq1  AGAGGAATGCCAGGGCCAGGAAGTGGGAGTGGGTGGGTTGGGGAGCAGGG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATGCCAGGGCCAGGAAGTGGGAGTGGGTGGGTTGGGGAGCAGGG  450

seq1  TGGGGAGAGGATATAGGGGGCTTTGGGGATAGCATTTGAAATGTAAATGA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGAGGATATAGGGGGCTTTGGGGATAGCATTTGAAATGTAAATGA  500

seq1  AGAAAATAACTAATTAAAAAAAGACAACTAAATCGGTCACTTTCTCACAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAACTAATTAAAAAAAGACAACTAAATCGGTCACTTTCTCACAC  550

seq1  ACCTCTACCCCACACCCTGCCCATGTTTCGATGGCTGGATAGGTGATCCT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTACCCCACACCCTGCCCATGTTTCGATGGCTGGATAGGTGATCCT  600

seq1  GAAGAGGATGGTAGGTTCAGAGAAAGGATGCGCCACACTCCAACTAGAAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGATGGTAGGTTCAGAGAAAGGATGCGCCACACTCCAACTAGAAG  650

seq1  AAACGTCTAGCAAACCATATTTACTGCAAAATAAAATGACCCTGTCTCAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTCTAGCAAACCATATTTACTGCAAAATAAAATGACCCTGTCTCAT  700

seq1  ACAGAACATCCTTGTCTTCGGGAGAGCTCCTCTCCCGGTTCTGTTTTTTC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACATCCTTGTCTTCGGGAGAGCTCCTCTCCCGGTTCTGTTTTTTC  750

seq1  CATCTGCGATCCTCCTCCCATCTCCCTCTTCGAGCATAGAGATTGGAGAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCGATCCTCCTCCCATCTCCCTCTTCGAGCATAGAGATTGGAGAG  800

seq1  AACTTAGGCGCCTGCCCAGGAGGCATATGAATAGTACATTAAAATGGGGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGGCGCCTGCCCAGGAGGCATATGAATAGTACATTAAAATGGGGA  850

seq1  TGGAAACTAAAGGAGAGGAGCTCCGTGGAATTC  871
      |||||||||||||||||||||||||||||||||
seq2  TGGAAACTAAAGGAGAGGAGCTCCGTGGAATTC  883

seq1: chr18_52637292_52638434
seq2: B6Ng01-282E23.g_67_1217

seq1  GAATTCATACGCTCTATACACATATTTGAATTCCTGGCAGACATTAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACGCTCTATACACATATTTGAATTCCTGGCAGACATTAAAGT  50

seq1  ATTCTGAGTTTGCTAGCCTGATGTTATCTTGTTGCTTCCTTTAGTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGTTTGCTAGCCTGATGTTATCTTGTTGCTTCCTTTAGTTTTTT  100

seq1  CTCTCTTTTGACATTAACTCAAACATAGAGTTACATTGAAATACAAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTTGACATTAACTCAAACATAGAGTTACATTGAAATACAAAAAC  150

seq1  TCAGAATAGGAATACTAAGTCAACTCTATGTTTACTTAGCTAAAGTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATAGGAATACTAAGTCAACTCTATGTTTACTTAGCTAAAGTGTTT  200

seq1  CATTTTATTTACAGCTCATGTACTTTTACATAATCAGCCTTTTCTGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATTTACAGCTCATGTACTTTTACATAATCAGCCTTTTCTGAAAT  250

seq1  AAATATGTTTATTATTTTTCCAATTGAAAGGTCTTTGATCGTTTTGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTTTATTATTTTTCCAATTGAAAGGTCTTTGATCGTTTTGTAAG  300

seq1  GAAGTGTTTCTTGTGCATTTGGGAGACAGTACAGTAGATTCACGGTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTTCTTGTGCATTTGGGAGACAGTACAGTAGATTCACGGTCCCA  350

seq1  ATTCAATTTGGAGGAGAAACTCTACTTTGATATTTTTCAAAGGGTTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTTGGAGGAGAAACTCTACTTTGATATTTTTCAAAGGGTTTTTC  400

seq1  CCTTTGGCTCATGCACCACTAGGTTTTTATAGCTGTCCTCCGGCCATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGCTCATGCACCACTAGGTTTTTATAGCTGTCCTCCGGCCATACT  450

seq1  GTCTTATACTCTCTTGGGATGATAACAGGGTATTTGGTTACAAGCTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATACTCTCTTGGGATGATAACAGGGTATTTGGTTACAAGCTGCCA  500

seq1  TACTCATGAAGAAAATCCATATATTTTTAGAAATGGGAGTAAGTTCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATGAAGAAAATCCATATATTTTTAGAAATGGGAGTAAGTTCCTTT  550

seq1  TTGGTCATGGCTAAGCGGGGCAGGGGCAAGGCCAGGTCTTTAAGGGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCATGGCTAAGCGGGGCAGGGGCAAGGCCAGGTCTTTAAGGGTCTG  600

seq1  TAGAATGAGAGGTTCTAATTTTATTCACTGTAAGTATGAGCCCCATCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAGAGGTTCTAATTTTATTCACTGTAAGTATGAGCCCCATCTTT  650

seq1  GATGCTATTGCTAGTAATATTCATACTTCTAAGTGTTAATGTACATACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTATTGCTAGTAATATTCATACTTCTAAGTGTTAATGTACATACTG  700

seq1  GCTTCTGAAGCAGGTTCTTTCTTGTTGAGAGGTAGCTTATGAACCTAAAG  750
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGAAGCA-GTTCTTTCTTGTTGAGAGGTAGCTTATGAACCTAAAG  749

seq1  ACCCCCAAGTTATTTATCTGGAGACAGAAAAACAAAGGTTGAAGCTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAAGTTATTTATCTGGAGACAGAAAAACAAAGGTTGAAGCTTTTT  799

seq1  GGGGAATGCT-GGGGATTGAATCCATGTCTTGGTACTTAATCACTACCCA  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATGCTGGGGGATTGAATCCATGTCTTGGTACTTAATCACTACCCA  849

seq1  CTAAATCATCCATCTCCCAGTGCCCACCGCCTTTCTCTTCTCGTTTCTAG  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTAAATCATCCATCT-CCAGTGCCCACCGCCTTTCTCTTCTCGTTTCTAG  898

seq1  GTCTAAGAAACTTTTCATTGCACTACCATTCTAGTTGCAAAACTCTCCAG  949
      ||||||| |||||||||||||||||||||||||||||| ||||||| |||
seq2  GTCTAAG-AACTTTTCATTGCACTACCATTCTAGTTGC-AAACTCT-CAG  945

seq1  CCGC-TCAGTACGGCCCATGGCGTGTCTGCTGTCAGC-TTCCCAGCTGTC  997
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCGCTTCAGTACGGCCCATGGCGTGTCTGCTGTCAGCTTTCCCAGCTGTC  995

seq1  TGTTTTCATG-ATCCTACTATAACTCAGG-AGGTGTCTT-AGGATAATGA  1044
      |||||||||| |||||||||||||||||| ||||||||| ||||||||||
seq2  TGTTTTCATGAATCCTACTATAACTCAGGAAGGTGTCTTAAGGATAATGA  1045

seq1  GTCAGCC-TTCTCGGCTACTTTTCCTGG--CATGGAGTGATG-TCTTTGG  1090
      ||||||| ||||||||||||||||||||   ||||||||||| |||||||
seq2  GTCAGCCTTTCTCGGCTACTTTTCCTGGGCAATGGAGTGATGTTCTTTGG  1095

seq1  CACATGGATGGC--TGAGTGAGTTTTAAT-GCAGCATTTTTTAAAACTTA  1137
      ||||||||||||   |||||  ||||||| ||| |  ||||| || | ||
seq2  CACATGGATGGCCTGGAGTGGATTTTAATGGCAACCATTTTTGAAGCCTA  1145

seq1  TGTTGC  1143
      ||||||
seq2  TGTTGC  1151