BAC Information

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BAC

Clone NameB6Ng01-282F06
Chromosome18 (Build37)
Map Location 36,657,929 - 36,803,769
singlet/doubletdoublet
Overlap geneHbegf, Slc4a9, LOC624979
Upstream geneSil1, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1
Downstream geneEif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282F06.bB6Ng01-282F06.g
ACCGA081576GA081577
length1,0851,178
definitionB6Ng01-282F06.b B6Ng01-282F06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,802,692 - 36,803,769)(36,657,929 - 36,659,086)
sequence
gaattctgatgtaaaatttgtataaaatatataccattaatattcttttt
aaaaaaagttttatttattcttattttatgtgcattgatgttttgcctac
aagtatatcggtgtgagggtgttggattccctggaactagagttgcagat
gttgtgagctgccatgtgtgtgctgggaatgggataggagctctcagaag
aacagccagagctcttaaacacaaagctctctctccagccctaccattag
tattctgaagattgataattcaagtcctatgaactattaaagaaccacaa
tatactttgattccaggaaaaatatggaatagtattaaggaactagaatt
taagagatgcacaattctaaatacctctactgacaagtataccctccatg
gttttaagccttaaccttagttaagaattcactgaggaattattctagtc
agggaagttagaagtagaggagaacctgaagggaaactagtaaacctttt
actatacttgtttaatatatacaaggtgttttacaggaaaacttaaatta
tactccatgaagctgggcagtggtagcacatacacacacctttaatccca
gaagcagaggcaggtggagctctatgagttccaggacagccagggttaca
gagagaaagcctgtcttgaaacaaagaaacaaaaaaataaaacaccccac
gttttcaaatcatgcttgcctttatcttcccattctctctattagtttat
actataaagcacttagcattatttactacaaaagccaactatcaattcca
gattaaagtaatgaaatctttaacaggaatgtacccccaaatgctaattt
aaactttacttattaatttagaaatagggactttttatgtagctagcctg
gtcttgaattcaaggcaattgccctgtctcagcaccctgtgtgatgggat
tacaggttttactctttctgtgtttactaacagaggataatttttattac
ataatttcatgaagtcatttcttaccatcttcatcattctcttcattctc
accctctgagttgattctgaatctcctttaaggtt
gaattcttcactgcctccctaggtaccatccggatcctgaacatcactgt
ctcttgcccagtctggctgtctcctaacttcttacaacttactaacgtct
aactcctgccccttacatttgcgtcctacagagcccatcccctgcgtcag
tcctatttctaaaacataaattaaatcacatcattcattccctgggtcaa
acccgctccttggcttccaagctgtttactgcagcctctaagggagggtc
cgtgtacccagccttgcctctcgtcagctctaatgacagtgctgcagctg
caggcgccctttctgcctctcacacacactgaatccatgtttgctctgaa
gcctatttttaactcaggcttcacatagctgctcccccttgtctcgggtg
agtcgttatcttttcagagaattgctccttcagcagcaccccatataaac
taattctgtccccactaatgcccggagtatcacttgttccaaaattacga
atttctgaaactattttatttctttgtgcacatattgttggcccagtgtc
accgttattcactgataagtgattgattctccagggacaaaattagagct
tgacatcctctaaatgtccatttttaaaatgtgaattaatgagtgtcctt
gctccaaaatgcaccctcccgccactgactcaagatgccttctcctttag
attagacgtctcatttggcaagtggtaaggaggcctccacaaatatttgc
tgagtgaatgaggctgaagtgaattacagcagcaaagattgccaccctcg
gaggccccactgttctcgatgaaatgacatgtctggacagacttgctgtc
catgggctgcttaggtcccccaatacttaggagggttcactttgacatta
aaaatgtgaggcagtgactgaaaaagcatcattttgtttttttaaagaaa
aagcaagggactggcaaagggccttgagtttcagtcctaggatgtgttca
ccaaaattaagcaacttggacaaggccagaagaattttgaggccagccta
ggctacattagggaggtacaagaacctgggtctcgattaattgaaaactc
tcaattatgtagttggggcattgtccttaatctggatctctcgactctat
ctccggaattccggaattacagggcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_36802692_36803769
seq2: B6Ng01-282F06.b_46_1130 (reverse)

seq1  AACCT--AAGGAGAATTCAGAA-CAAC-CAGAGGGTGAAGATGAAGAGAA  46
      |||||  |||||| |||||||| |||| ||||||||||  ||||||||||
seq2  AACCTTAAAGGAG-ATTCAGAATCAACTCAGAGGGTGAGAATGAAGAGAA  49

seq1  TGATGAAGATGGTAAGAAATTGAC-TCATG-AATTATGTA--TAAAATTA  92
      ||||||||||||||||||| |||| ||||| |||||||||   |||||||
seq2  TGATGAAGATGGTAAGAAA-TGACTTCATGAAATTATGTAATAAAAATTA  98

seq1  TCCTCTGTTAGTAAACACAG-AAGAGT-AAACCTGTAATCCCATCACACA  140
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  TCCTCTGTTAGTAAACACAGAAAGAGTAAAACCTGTAATCCCATCACACA  148

seq1  GGGTGCTGAGACAGGGCAATTGCCTTGAATTCAAGACCAGGCTAGCTACA  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTGAGACAGGGCAATTGCCTTGAATTCAAGACCAGGCTAGCTACA  198

seq1  TAAAAAGTCCCTATTTCTAAATTAATAAGTAAAGTTTAAATTAGCATTTT  240
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAAAAAGTCCCTATTTCTAAATTAATAAGTAAAGTTTAAATTAGCA-TTT  247

seq1  GGGGGTACATTCCTGTTAAAGATTTCATTACTTTAATCTGGAATTGATAG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTACATTCCTGTTAAAGATTTCATTACTTTAATCTGGAATTGATAG  297

seq1  TTGGCTTTTGTAGTAAATAATGCTAAGTGCTTTATAGTATAAACTAATAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTTGTAGTAAATAATGCTAAGTGCTTTATAGTATAAACTAATAG  347

seq1  AGAGAATGGGAAGATAAAGGCAAGCATGATTTGAAAACGTGGGGTGTTTT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGGGAAGATAAAGGCAAGCATGATTTGAAAACGTGGGGTGTTTT  397

seq1  ATTTTTTTGTTTCTTTGTTTCAAGACAGGCTTTCTCTCTGTAACCCTGGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTGTTTCTTTGTTTCAAGACAGGCTTTCTCTCTGTAACCCTGGC  447

seq1  TGTCCTGGAACTCATAGAGCTCCACCTGCCTCTGCTTCTGGGATTAAAGG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACTCATAGAGCTCCACCTGCCTCTGCTTCTGGGATTAAAGG  497

seq1  TGTGTGTATGTGCTACCACTGCCCAGCTTCATGGAGTATAATTTAAGTTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGTGCTACCACTGCCCAGCTTCATGGAGTATAATTTAAGTTT  547

seq1  TCCTGTAAAACACCTTGTATATATTAAACAAGTATAGTAAAAGGTTTACT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAAAACACCTTGTATATATTAAACAAGTATAGTAAAAGGTTTACT  597

seq1  AGTTTCCCTTCAGGTTCTCCTCTACTTCTAACTTCCCTGACTAGAATAAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCCTTCAGGTTCTCCTCTACTTCTAACTTCCCTGACTAGAATAAT  647

seq1  TCCTCAGTGAATTCTTAACTAAGGTTAAGGCTTAAAACCATGGAGGGTAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGTGAATTCTTAACTAAGGTTAAGGCTTAAAACCATGGAGGGTAT  697

seq1  ACTTGTCAGTAGAGGTATTTAGAATTGTGCATCTCTTAAATTCTAGTTCC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCAGTAGAGGTATTTAGAATTGTGCATCTCTTAAATTCTAGTTCC  747

seq1  TTAATACTATTCCATATTTTTCCTGGAATCAAAGTATATTGTGGTTCTTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACTATTCCATATTTTTCCTGGAATCAAAGTATATTGTGGTTCTTT  797

seq1  AATAGTTCATAGGACTTGAATTATCAATCTTCAGAATACTAATGGTAGGG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTCATAGGACTTGAATTATCAATCTTCAGAATACTAATGGTAGGG  847

seq1  CTGGAGAGAGAGCTTTGTGTTTAAGAGCTCTGGCTGTTCTTCTGAGAGCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGAGAGCTTTGTGTTTAAGAGCTCTGGCTGTTCTTCTGAGAGCT  897

seq1  CCTATCCCATTCCCAGCACACACATGGCAGCTCACAACATCTGCAACTCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCCATTCCCAGCACACACATGGCAGCTCACAACATCTGCAACTCT  947

seq1  AGTTCCAGGGAATCCAACACCCTCACACCGATATACTTGTAGGCAAAACA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGGAATCCAACACCCTCACACCGATATACTTGTAGGCAAAACA  997

seq1  TCAATGCACATAAAATAAGAATAAATAAAACTTTTTTTAAAAAGAATATT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCACATAAAATAAGAATAAATAAAACTTTTTTTAAAAAGAATATT  1047

seq1  AATGGTATATATTTTATACAAATTTTACATCAGAATTC  1078
      ||||||||||||||||||||||||||||||||||||||
seq2  AATGGTATATATTTTATACAAATTTTACATCAGAATTC  1085

seq1: chr18_36657929_36659086
seq2: B6Ng01-282F06.g_70_1247

seq1  GAATTCTTCACTGCCTCCCTAGGTACCATCCGGATCCTGAACATCACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACTGCCTCCCTAGGTACCATCCGGATCCTGAACATCACTGT  50

seq1  CTCTTGCCCAGTCTGGCTGTCTCCTAACTTCTTACAACTTACTAACGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCCAGTCTGGCTGTCTCCTAACTTCTTACAACTTACTAACGTCT  100

seq1  AACTCCTGCCCCTTACATTTGCGTCCTACAGAGCCCATCCCCTGCGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGCCCCTTACATTTGCGTCCTACAGAGCCCATCCCCTGCGTCAG  150

seq1  TCCTATTTCTAAAACATAAATTAAATCACATCATTCATTCCCTGGGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTCTAAAACATAAATTAAATCACATCATTCATTCCCTGGGTCAA  200

seq1  ACCCGCTCCTTGGCTTCCAAGCTGTTTACTGCAGCCTCTAAGGGAGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCTCCTTGGCTTCCAAGCTGTTTACTGCAGCCTCTAAGGGAGGGTC  250

seq1  CGTGTACCCAGCCTTGCCTCTCGTCAGCTCTAATGACAGTGCTGCAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTACCCAGCCTTGCCTCTCGTCAGCTCTAATGACAGTGCTGCAGCTG  300

seq1  CAGGCGCCCTTTCTGCCTCTCACACACACTGAATCCATGTTTGCTCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGCCCTTTCTGCCTCTCACACACACTGAATCCATGTTTGCTCTGAA  350

seq1  GCCTATTTTTAACTCAGGCTTCACATAGCTGCTCCCCCTTGTCTCGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTTTTAACTCAGGCTTCACATAGCTGCTCCCCCTTGTCTCGGGTG  400

seq1  AGTCGTTATCTTTTCAGAGAATTGCTCCTTCAGCAGCACCCCATATAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTTATCTTTTCAGAGAATTGCTCCTTCAGCAGCACCCCATATAAAC  450

seq1  TAATTCTGTCCCCACTAATGCCCGGAGTATCACTTGTTCCAAAATTACGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTGTCCCCACTAATGCCCGGAGTATCACTTGTTCCAAAATTACGA  500

seq1  ATTTCTGAAACTATTTTATTTCTTTGTGCACATATTGTTGGCCCAGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAAACTATTTTATTTCTTTGTGCACATATTGTTGGCCCAGTGTC  550

seq1  ACCGTTATTCACTGATAAGTGATTGATTCTCCAGGGACAAAATTAGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTTATTCACTGATAAGTGATTGATTCTCCAGGGACAAAATTAGAGCT  600

seq1  TGACATCCTCTAAATGTCCATTTTTAAAATGTGAATTAATGAGTGTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCCTCTAAATGTCCATTTTTAAAATGTGAATTAATGAGTGTCCTT  650

seq1  GCTCCAAAATGCACCCTCCCGCCACTGACTCAAGATGCCTTCTCCTTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAAATGCACCCTCCCGCCACTGACTCAAGATGCCTTCTCCTTTAG  700

seq1  ATTAGACGTCTCATTTGGCAAGTGGTAAGGAGGCCTCCACAAATATTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACGTCTCATTTGGCAAGTGGTAAGGAGGCCTCCACAAATATTTGC  750

seq1  TGAGTGAATGAGGCTGAAGTGAATTACAGCAGCAAAGATTGCCACCCTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAATGAGGCTGAAGTGAATTACAGCAGCAAAGATTGCCACCCTCG  800

seq1  GAGGCCCCACTGTTCTCGATGAAATGACATGTCTGGACAGACTTGCTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCCACTGTTCTCGATGAAATGACATGTCTGGACAGACTTGCTGTC  850

seq1  CCATGGCTGCTTAGGTCCCCCAATACTTAGGAGGG-TCACTTTGACATT-  898
      |   ||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  CATGGGCTGCTTAGGTCCCCCAATACTTAGGAGGGTTCACTTTGACATTA  900

seq1  AAAATGTGAGGCAGTGACTGAAAAAGCATCA-TTTGTTTTTTTAAAG-AA  946
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  AAAATGTGAGGCAGTGACTGAAAAAGCATCATTTTGTTTTTTTAAAGAAA  950

seq1  AAGCAAGGGACTGGCAAAGGGCC-TGAGTTTCAGTCCTA-GATGTG-TCA  993
      ||||||||||||||||||||||| ||||||||||||||| |||||| |||
seq2  AAGCAAGGGACTGGCAAAGGGCCTTGAGTTTCAGTCCTAGGATGTGTTCA  1000

seq1  C--AAATT-AGCACCTTGGAC-AGGCCAG-AGAA-TTTGAGGCCAGCCTA  1037
      |  ||||| |||| ||||||| ||||||| |||| |||||||||||||||
seq2  CCAAAATTAAGCAACTTGGACAAGGCCAGAAGAATTTTGAGGCCAGCCTA  1050

seq1  GGCTACA-TAGGGAGGTACAAG-ACCT-GGTCTCAAATAA-TGAAAACTC  1083
      ||||||| |||||||||||||| |||| |||||| | ||| |||||||||
seq2  GGCTACATTAGGGAGGTACAAGAACCTGGGTCTCGATTAATTGAAAACTC  1100

seq1  ---ATTATGTAGTTGGGG-ATGGTCTTAAATTCTTGATCTTCTCGACTCT  1129
         ||||||||||||||| || ||| | || ||| |||| ||||||||||
seq2  TCAATTATGTAGTTGGGGCATTGTCCTTAA-TCTGGATC-TCTCGACTCT  1148

seq1  ATCTCCCGATTTCCGGGATTACA-GGCTTG  1158
      |||||| || |||||| |||||| ||||||
seq2  ATCTCCGGAATTCCGGAATTACAGGGCTTG  1178