BAC Information

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BAC

Clone NameB6Ng01-282M23
Chromosome18 (Build37)
Map Location 66,420,764 - 66,568,711
singlet/doubletdoublet
Overlap geneCcbe1
Upstream geneAlpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1
Downstream genePmaip1, LOC100042852, Mc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282M23.bB6Ng01-282M23.g
ACCGA081928GA081929
length1,0871,146
definitionB6Ng01-282M23.b B6Ng01-282M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,567,630 - 66,568,711)(66,420,764 - 66,421,923)
sequence
gaattctctatgtagttggggctggtcttgaactcccgatcttcctgcct
ccacctcgaaaatactgggatcacaggcatgtgtgaccacactcagttaa
cttcttagaagcaggtggcagtctgggtgttgggacctgatggaaagatt
ttatatgttgatcagaaaggaactgaacagagacacgttttcagttattt
tttacaaggattgtagtacctaaggcctccagcctacaaagcaagtgctc
taccactgagctgcctctcagtccccaagaacatttttgaaacctcacca
aaccctatggctaaatcggcccactttgctaacacagtaagcaaagctgt
aaacaggcacactggatcactgtggttccagaagaccgtgtcatttgctt
agaatccctgagctcagatgggtgtttgggcaaagacaggccatgggcaa
acttgtgaggcctcattggtttctctgtaaaacccacacattcgccaacc
actctatccatgaccttatgcgggtttatttcaacttccctataattaaa
aagactcctgattgattgcacttggaaaactttaaaagtactatccctcc
acctctctgtggggctggggattggaaatagggcctccctctaacaagga
acatattctagtcttgagctacacttatagctagaaatcttgagaaccat
gcttggccacttgacagttgatactgcctagaagtgctttttaaatctca
atccatatctgaagtgaaggatagaggaggaggcaatgtgacaggcaagc
aagcatctgtgtgtacctgccagctaggactctctctgtctagagggaag
atgctctccactgcctgtcctggtcctgatgaaccatccactgtagtcac
tcactggttggtgacactgctgaatgaccttggagttctgggcacagaga
caccctggcccatcattttcaacaccttcatatgacaccctgccttgcca
ggattcctagattgcaaagagatgtctgagtcacctattttgaatttcgg
tcctgaagccaggcctgccagaacgttggttggtggt
gaattcattatgtgagcaggagtaccctcaccccctaaaaacctacatga
aataatcaggcatggtggagcatgcttataatctcagcactggagaaact
gaggcaggcagataactagtactcgctagccaacctaatctgagttcctg
gccaagtgaaaggccttgtctcaaaaccaaaataaacagcacctggggaa
caaccctgaggttggtccttgacctccatgtgcacgtatgtgttcacaca
cactcaacatcaaacccttgaagcttcagtttcaaagaataaaggtactt
caagttattcctcattattcaagtaattacaatgttgttgcaaatcctga
accctgttttccagcggaattaggtagggctgctgtcagactctgcacat
aacattttcaatccattacctgatttttatgtttcatttcaaagtcctga
tctgacaggcatggcagagctggtaatgtcaaagttacagtgaacaagac
ctatagagcgagtaggcttttctgtgaggtaaatcacgcccttttctggg
cttagaaacactgctcaggccaggcaatggtggcgcacacctttagtccc
aatacttggaaggcagaggcaggcggatttctgagtttgaggctagcctg
gtctacagagtgagttccaggacagccagggctacagagagaaaccctgt
ctcaaaaaaaccataaaaaaaaaaaaaaaacaaaagaaagaaagaaagaa
agaaagaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggagaa
aggaagaaagaaagaaaggaagaaagaagaaagaatccctgctcagaaag
tccacattacacttaggggctgttttaagcagaaatattcattggacaaa
atacaacacacacacacacacacacatcacacggagttatgcagactgcc
aaggaaaaaactttttcacaataggagtaaaataagaacattgttctctt
tcccctttcaacacatgtcctaataactaaaaggacttccagtgtcacat
actaggtctccagtgaagagttttccgaacttaattcggattgaataggc
atactgaaaatacggaagatcacgtatgcttcaatcatactagtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_66567630_66568711
seq2: B6Ng01-282M23.b_48_1134 (reverse)

seq1  ACCACCA---AACCTTCT-GCAGGCCCTGGCTTCAGGACCCGAATTC-AA  45
      |||||||   ||| |||| ||||| |||||||||||||||  ||||| ||
seq2  ACCACCAACCAACGTTCTGGCAGG-CCTGGCTTCAGGACCGAAATTCAAA  49

seq1  ATA-GTGACCTCAGACATCTCTTTGCAATCTAGGAATCCTGGCAAGGCAG  94
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGA-CTCAGACATCTCTTTGCAATCTAGGAATCCTGGCAAGGCAG  98

seq1  GGTGTCATATG-AGGTGTTGAAAATGATGGGCCAGGTTGTCTCTGTGCCC  143
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  GGTGTCATATGAAGGTGTTGAAAATGATGGGCCAGGGTGTCTCTGTGCCC  148

seq1  AGAACTCCAAGGTCATTCAGCAGTGTCACCAACCAGTGAGTGACTACAGT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCCAAGGTCATTCAGCAGTGTCACCAACCAGTGAGTGACTACAGT  198

seq1  GGATGGTTCATCAGGACCAGGACAGGCAGTGGAGAGCATCTTCCCTCTAG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTTCATCAGGACCAGGACAGGCAGTGGAGAGCATCTTCCCTCTAG  248

seq1  ACAGAGAGAGTCCTAGCTGGCAGGTACACACAGATGCTTGCTTGCCTGTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAGTCCTAGCTGGCAGGTACACACAGATGCTTGCTTGCCTGTC  298

seq1  ACATTGCCTCCTCCTCTATCCTTCACTTCAGATATGGATTGAGATTTAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCCTCCTCCTCTATCCTTCACTTCAGATATGGATTGAGATTTAAA  348

seq1  AAGCACTTCTAGGCAGTATCAACTGTCAAGTGGCCAAGCATGGTTCTCAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTCTAGGCAGTATCAACTGTCAAGTGGCCAAGCATGGTTCTCAA  398

seq1  GATTTCTAGCTATAAGTGTAGCTCAAGACTAGAATATGTTCCTTGTTAGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTAGCTATAAGTGTAGCTCAAGACTAGAATATGTTCCTTGTTAGA  448

seq1  GGGAGGCCCTATTTCCAATCCCCAGCCCCACAGAGAGGTGGAGGGATAGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCCCTATTTCCAATCCCCAGCCCCACAGAGAGGTGGAGGGATAGT  498

seq1  ACTTTTAAAGTTTTCCAAGTGCAATCAATCAGGAGTCTTTTTAATTATAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAAGTTTTCCAAGTGCAATCAATCAGGAGTCTTTTTAATTATAG  548

seq1  GGAAGTTGAAATAAACCCGCATAAGGTCATGGATAGAGTGGTTGGCGAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTGAAATAAACCCGCATAAGGTCATGGATAGAGTGGTTGGCGAAT  598

seq1  GTGTGGGTTTTACAGAGAAACCAATGAGGCCTCACAAGTTTGCCCATGGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTTTTACAGAGAAACCAATGAGGCCTCACAAGTTTGCCCATGGC  648

seq1  CTGTCTTTGCCCAAACACCCATCTGAGCTCAGGGATTCTAAGCAAATGAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTGCCCAAACACCCATCTGAGCTCAGGGATTCTAAGCAAATGAC  698

seq1  ACGGTCTTCTGGAACCACAGTGATCCAGTGTGCCTGTTTACAGCTTTGCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCTTCTGGAACCACAGTGATCCAGTGTGCCTGTTTACAGCTTTGCT  748

seq1  TACTGTGTTAGCAAAGTGGGCCGATTTAGCCATAGGGTTTGGTGAGGTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTTAGCAAAGTGGGCCGATTTAGCCATAGGGTTTGGTGAGGTTT  798

seq1  CAAAAATGTTCTTGGGGACTGAGAGGCAGCTCAGTGGTAGAGCACTTGCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGTTCTTGGGGACTGAGAGGCAGCTCAGTGGTAGAGCACTTGCT  848

seq1  TTGTAGGCTGGAGGCCTTAGGTACTACAATCCTTGTAAAAAATAACTGAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGCTGGAGGCCTTAGGTACTACAATCCTTGTAAAAAATAACTGAA  898

seq1  AACGTGTCTCTGTTCAGTTCCTTTCTGATCAACATATAAAATCTTTCCAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGTCTCTGTTCAGTTCCTTTCTGATCAACATATAAAATCTTTCCAT  948

seq1  CAGGTCCCAACACCCAGACTGCCACCTGCTTCTAAGAAGTTAACTGAGTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCCAACACCCAGACTGCCACCTGCTTCTAAGAAGTTAACTGAGTG  998

seq1  TGGTCACACATGCCTGTGATCCCAGTATTTTCGAGGTGGAGGCAGGAAGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACACATGCCTGTGATCCCAGTATTTTCGAGGTGGAGGCAGGAAGA  1048

seq1  TCGGGAGTTCAAGACCAGCCCCAACTACATAGAGAATTC  1082
      |||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAGTTCAAGACCAGCCCCAACTACATAGAGAATTC  1087

seq1: chr18_66420764_66421923
seq2: B6Ng01-282M23.g_67_1212

seq1  GAATTCATTATGTGAGCAGGAGTACCCTCACCCCCTAAAAACCTACATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGTGAGCAGGAGTACCCTCACCCCCTAAAAACCTACATGA  50

seq1  AATAATCAGGCATGGTGGAGCATGCTTATAATCTCAGCACTGGAGAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCAGGCATGGTGGAGCATGCTTATAATCTCAGCACTGGAGAAACT  100

seq1  GAGGCAGGCAGATAACTAGTACTCGCTAGCCAACCTAATCTGAGTTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGCAGATAACTAGTACTCGCTAGCCAACCTAATCTGAGTTCCTG  150

seq1  GCCAAGTGAAAGGCCTTGTCTCAAAACCAAAATAAACAGCACCTGGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTGAAAGGCCTTGTCTCAAAACCAAAATAAACAGCACCTGGGGAA  200

seq1  CAACCCTGAGGTTGGTCCTTGACCTCCATGTGCACGTATGTGTTCACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTGAGGTTGGTCCTTGACCTCCATGTGCACGTATGTGTTCACACA  250

seq1  CACTCAACATCAAACCCTTGAAGCTTCAGTTTCAAAGAATAAAGGTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAACATCAAACCCTTGAAGCTTCAGTTTCAAAGAATAAAGGTACTT  300

seq1  CAAGTTATTCCTCATTATTCAAGTAATTACAATGTTGTTGCAAATCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTATTCCTCATTATTCAAGTAATTACAATGTTGTTGCAAATCCTGA  350

seq1  ACCCTGTTTTCCAGCGGAATTAGGTAGGGCTGCTGTCAGACTCTGCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTTTTCCAGCGGAATTAGGTAGGGCTGCTGTCAGACTCTGCACAT  400

seq1  AACATTTTCAATCCATTACCTGATTTTTATGTTTCATTTCAAAGTCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTCAATCCATTACCTGATTTTTATGTTTCATTTCAAAGTCCTGA  450

seq1  TCTGACAGGCATGGCAGAGCTGGTAATGTCAAAGTTACAGTGAACAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGGCATGGCAGAGCTGGTAATGTCAAAGTTACAGTGAACAAGAC  500

seq1  CTATAGAGCGAGTAGGCTTTTCTGTGAGGTAAATCACGCCCTTTTCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAGCGAGTAGGCTTTTCTGTGAGGTAAATCACGCCCTTTTCTGGG  550

seq1  CTTAGAAACACTGCTCAGGCCAGGCAATGGTGGCGCACACCTTTAGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAACACTGCTCAGGCCAGGCAATGGTGGCGCACACCTTTAGTCCC  600

seq1  AATACTTGGAAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCTAGCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTGGAAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCTAGCCTG  650

seq1  GTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACAGAGAGAAACCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACAGAGAGAAACCCTGT  700

seq1  CTCAAAAAAACCATAAAAAAAAAAAAAAAACAAAAGAAAGAAAGAAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAAAACCATAAAAAAAAAAAAAAAACAAAAGAAAGAAAGAAAGAA  750

seq1  AGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG  800
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAAAG-AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG-AG  798

seq1  AAAGGAAGAAAGAAAGAAAGGAAGAAAGAAAGAAAGAATCCCTGCTCAGA  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAAGGAAGAAAGAAAGAAAGGAAGAAAG-AAGAAAGAATCCCTGCTCAGA  847

seq1  AAGTCCACATTACACTTAGGGGCTGTTTTAAGCAGAAATA-TCATT-GAC  898
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  AAGTCCACATTACACTTAGGGGCTGTTTTAAGCAGAAATATTCATTGGAC  897

seq1  AAAATACAAACACACACACACACACACACA-CACACAGAGTTATGCAGAC  947
      ||||||| |||||||||||||||||||||| ||||| |||||||||||||
seq2  AAAATAC-AACACACACACACACACACACATCACACGGAGTTATGCAGAC  946

seq1  TGCCAAGGAAAAAAACTTTTCACAATAAGAGTTAAAATAAGAACATTGTT  997
      ||||||||||||||  ||||||||||| ||| ||||||||||||||||||
seq2  TGCCAAGGAAAAAACTTTTTCACAATAGGAG-TAAAATAAGAACATTGTT  995

seq1  CTTCCTTCCCCTTTC-ACACATGTCCCTAAATAACTAAAAAGAACTTCAA  1046
      | || |||||||||| ||||||||||   ||||||| ||||| ||||| |
seq2  C-TCTTTCCCCTTTCAACACATGTCC--TAATAACT-AAAAGGACTTCCA  1041

seq1  GTGGTCACATACTAAGTTCTCCACGTAGATGAGTTTT-CAAACATATAAT  1095
      || |||||||||| || |||||| || || ||||||| | ||| ||    
seq2  GT-GTCACATACT-AGGTCTCCA-GT-GAAGAGTTTTCCGAACTTA----  1083

seq1  TTTTGGATATGATTAGTAATA-TAAAAATACAGAAGATCAACTATGCTTC  1144
       || |||| ||| |||  ||| | ||||||| ||||||||  ||||||||
seq2  ATTCGGAT-TGAATAGGCATACTGAAAATACGGAAGATCACGTATGCTTC  1132

seq1  AATCACTAACTAGTTA  1160
      |||||   ||||||||
seq2  AATCA--TACTAGTTA  1146