BAC Information

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BAC

Clone NameB6Ng01-283M16
Chromosome18 (Build37)
Map Location 58,546,264 - 58,656,245
singlet/doubletdoublet
Overlap genenone
Upstream genePrrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
Downstream geneSlc27a6, Isoc1, Adamts19, A730017C20Rik, 4833446K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283M16.bB6Ng01-283M16.g
ACCGA082661GA082662
length1,1021,128
definitionB6Ng01-283M16.b B6Ng01-283M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,546,264 - 58,547,362)(58,655,124 - 58,656,245)
sequence
gaattctacacaaggcgacatgagaagcatatttgaaagtgtcattttga
aaagttgtgtaggaaaagagaatagaggacagcttgtctccactatctcc
cagttctgctcacttcagagatttagctcttttaagccaatatggctgaa
ctgaaatgttttccaaaattccttatggtttagaaaaagactataaagta
acaaaaaataataataattaaaaggaaagtattgctgccaaattagaagc
tccacataattctgttttcctttggagttttggtaatgctggggggaaag
cctttattcacattccactcaagtgcccgtcatccacgcccactttcttc
ttaaaagaaaacatttacttctaggacttggtcatagggaagtacaaagg
acttcgttgtgtgtgaaaatgaaactgggtgtgagccttttaaggaaaaa
ttaaagaaggatgtgtatgtggggggcaaaattccccaaatcttgtttag
ttgatcctgcctacctcctacttagaaggcgggctgccctgcatggtgag
ctgcagatgttacgcataggaactgaggagatgcctccacaggcatgctg
ctgcgacacactgtagcagcatccagttcagattgcgcacaggggctgtt
atgacacctggtattcggggatcccagcggggcagtatcgagtagacacc
ttctgagaggctgattggtatttctgaaactttcctgtcctacccacaag
tcctagcaaagcataaactgtcaaatgggacaatctcagttgggatgatt
tgatatgtgattgggggaggtgggcttaactgagattggtgtgttttatt
tgttcctttattttgtttttcaagatagagaccttgtgtgtcacagcccc
tgactctcctggactcactctaaagaccaaattggcctccaactcacaag
agatccacttacctctgcctcccaagttgttgggatttaaaggcatgtgc
cactacacctggcaaattggtggtattttttagtatagtactcatggaga
acagagtaaaacatcacagaatgtaaaaggaatcactttcaaggcatatc
ta

gaattccctgtgatattaatagctgtgacgttaatagctgacccataagt
tcaaaatgtactactgctttgctgaccaaatcataataacgcaccatggg
ggcaggcaaagtaagtcactaggccaaagggttacttagttactatgcaa
accaaccaatgtctgaaagggttacttgctacaccaatgagaataagcca
gctaccctgttgcccaaatcttcccttacaatgtataaaaagtgtgtttt
ttttctttgttctgggtctctcctctagcctgcgtgctgagaggtgggga
ggggtccccaacatgttggaacaataaaaacgcttgcagttttcagtgat
ggtggtctctgtggtctttgtgagtgagggtctgttgacaaacttcaata
gtgcctttactcacatgagccattacagcatccccagtataattgttcac
ccaaacacctgaaaaactatacgtctctcataaaggaaaagcctgggaac
catcagcagcaagggtggcaaaagtcaatggtagacttttgatacttata
caaactttaattgtatacggaatttatggaaaataataaataaactggtt
aagaatgaactcagtagagacgctcttcaaactaaaagtgggcaacaaag
taattgctcaaaaaagggtgaagttatggattagactttgatttcttagt
catgtatatccaaattagtattttaataagaagtatataactggaaaata
agtatctagcttctattccaacaaaggataataagaactaagagaaacat
ggtcagttggaataagggtttaagaaagaggaagaggagagggacagggg
aaagggagagtgaagacatttgtacagcagggaaaacatttaaatgtatt
taaactgagtcaagctctgtctacagaaggaagaagacaacagcccaaca
tcactgaagagtgaagacccacaaccaagtcagcccagcagtagagatta
ctaactcaaacaaactattttgtactatttttggtagggaggtacctttt
acactttttgaacatggccaaaatcgtgtctaacattacaaacatttata
atgaagtagcctcagttacaggttctcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_58546264_58547362
seq2: B6Ng01-283M16.b_45_1146

seq1  GAATTCTACACAAGGCGACATGAGAAGCATATTTGAAAGTGTCATTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACAAGGCGACATGAGAAGCATATTTGAAAGTGTCATTTTGA  50

seq1  AAAGTTGTGTAGGAAAAGAGAATAGAGGACAGCTTGTCTCCACTATCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGTGTAGGAAAAGAGAATAGAGGACAGCTTGTCTCCACTATCTCC  100

seq1  CAGTTCTGCTCACTTCAGAGATTTAGCTCTTTTAAGCCAATATGGCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGCTCACTTCAGAGATTTAGCTCTTTTAAGCCAATATGGCTGAA  150

seq1  CTGAAATGTTTTCCAAAATTCCTTATGGTTTAGAAAAAGACTATAAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGTTTTCCAAAATTCCTTATGGTTTAGAAAAAGACTATAAAGTA  200

seq1  ACAAAAAATAATAATAATTAAAAGGAAAGTATTGCTGCCAAATTAGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAATAATAATAATTAAAAGGAAAGTATTGCTGCCAAATTAGAAGC  250

seq1  TCCACATAATTCTGTTTTCCTTTGGAGTTTTGGTAATGCTGGGGGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATAATTCTGTTTTCCTTTGGAGTTTTGGTAATGCTGGGGGGAAAG  300

seq1  CCTTTATTCACATTCCACTCAAGTGCCCGTCATCCACGCCCACTTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTCACATTCCACTCAAGTGCCCGTCATCCACGCCCACTTTCTTC  350

seq1  TTAAAAGAAAACATTTACTTCTAGGACTTGGTCATAGGGAAGTACAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAAAACATTTACTTCTAGGACTTGGTCATAGGGAAGTACAAAGG  400

seq1  ACTTCGTTGTGTGTGAAAATGAAACTGGGTGTGAGCCTTTTAAGGAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCGTTGTGTGTGAAAATGAAACTGGGTGTGAGCCTTTTAAGGAAAAA  450

seq1  TTAAAGAAGGATGTGTATGTGGGGGGCAAAATTCCCCAAATCTTGTTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAGGATGTGTATGTGGGGGGCAAAATTCCCCAAATCTTGTTTAG  500

seq1  TTGATCCTGCCTACCTCCTACTTAGAAGGCGGGCTGCCCTGCATGGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCTGCCTACCTCCTACTTAGAAGGCGGGCTGCCCTGCATGGTGAG  550

seq1  CTGCAGATGTTACGCATAGGAACTGAGGAGATGCCTCCACAGGCATGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGATGTTACGCATAGGAACTGAGGAGATGCCTCCACAGGCATGCTG  600

seq1  CTGCGACACACTGTAGCAGCATCCAGTTCAGATTGCGCACAGGGGCTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGACACACTGTAGCAGCATCCAGTTCAGATTGCGCACAGGGGCTGTT  650

seq1  ATGACACCTGGTATTCGGGGATCCCAGCGGGGCAGTATCGAGTAGACACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACCTGGTATTCGGGGATCCCAGCGGGGCAGTATCGAGTAGACACC  700

seq1  TTCTGAGAGGCTGATTGGTATTTCTGAAACTTTCCTGTCCTACCCACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGAGGCTGATTGGTATTTCTGAAACTTTCCTGTCCTACCCACAAG  750

seq1  TCCTAGCAAAGCATAAACTGTCAAATGGGACAATCTCAGTTGGGATGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCAAAGCATAAACTGTCAAATGGGACAATCTCAGTTGGGATGATT  800

seq1  TGATATGTGATT-GGGGAGGTGGGCTTAACTGAGATTGGTGTGTTTTATT  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGATATGTGATTGGGGGAGGTGGGCTTAACTGAGATTGGTGTGTTTTATT  850

seq1  TGTTCCTTTATTTTGTTTTTCAAGATAGAGACC-TGTGTGTCACAGCCCC  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTTCCTTTATTTTGTTTTTCAAGATAGAGACCTTGTGTGTCACAGCCCC  900

seq1  TGACTCTCCTGGGACTCACTCTAAAGACCAAATTGGCCTCCAACTCACAA  948
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTCCT-GGACTCACTCTAAAGACCAAATTGGCCTCCAACTCACAA  949

seq1  GAGATCCACTTACCTCTGCCTCCCAAG-TGTTGGGATTT-AAGGCATGTG  996
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  GAGATCCACTTACCTCTGCCTCCCAAGTTGTTGGGATTTAAAGGCATGTG  999

seq1  CCACTACACCTGGCAAATTGGT-GTA-TTTTTAGTATAGTACTTCAT-GA  1043
      |||||||||||||||||||||| ||| ||||||||||||||| |||| ||
seq2  CCACTACACCTGGCAAATTGGTGGTATTTTTTAGTATAGTAC-TCATGGA  1048

seq1  GAACAGAG-AAAACATCACAGAAATGTAAAAGGAAACCACTTTCAAGGCA  1092
      |||||||| |||||||||||| ||||||||||| || |||||||||||| 
seq2  GAACAGAGTAAAACATCACAG-AATGTAAAAGG-AATCACTTTCAAGGC-  1095

seq1  ATATCTA  1099
      |||||||
seq2  ATATCTA  1102


seq1: chr18_58655124_58656245
seq2: B6Ng01-283M16.g_66_1193 (reverse)

seq1  CGAGA--CTGT-ACTGA-GCTACTTCATTAT-AATGTTTGTAATTGTTAG  45
      |||||  |||| ||||| ||||||||||||| ||||||||||| ||||||
seq2  CGAGAACCTGTAACTGAGGCTACTTCATTATAAATGTTTGTAA-TGTTAG  49

seq1  ACACGATTTTTGCCATG-TCAAAAAGTGTAAAAGGTACCTCCCCTACCAA  94
      |||||||||| |||||| |||||||||||||||||||||| |||||||||
seq2  ACACGATTTTGGCCATGTTCAAAAAGTGTAAAAGGTACCT-CCCTACCAA  98

seq1  AAATAGTAC-AAATAGTTTGTTTGAGTTAGTAAATCTCTACTGCCTTGGC  143
      ||||||||| ||||||||||||||||||||| ||||||||||| || |||
seq2  AAATAGTACAAAATAGTTTGTTTGAGTTAGT-AATCTCTACTG-CTGGGC  146

seq1  TGGCTTGGTTGTGGGTCTTCACTCTTCAGTGATGTTGGGCTG-TGTCTTC  192
      || ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGACTTGGTTGTGGGTCTTCACTCTTCAGTGATGTTGGGCTGTTGTCTTC  196

seq1  TTCC-TCTGTAGACAGAGCTTGACTCAGTTTAAATACATTT-AATGTTTT  240
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCCTTCTGTAGACAGAGCTTGACTCAGTTTAAATACATTTAAATGTTTT  246

seq1  CCCTGCTGTACAAATGTCTTCACTCTCCCTTTCCCCTGTCCCTCTCCTCT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGTACAAATGTCTTCACTCTCCCTTTCCCCTGTCCCTCTCCTCT  296

seq1  TCCTCTTTCTTAAACCCTTATTCCAACTGACCATGTTTCTCTTAGTTCTT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTCTTAAACCCTTATTCCAACTGACCATGTTTCTCTTAGTTCTT  346

seq1  ATTATCCTTTGTTGGAATAGAAGCTAGATACTTATTTTCCAGTTATATAC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCTTTGTTGGAATAGAAGCTAGATACTTATTTTCCAGTTATATAC  396

seq1  TTCTTATTAAAATACTAATTTGGATATACATGACTAAGAAATCAAAGTCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTAAAATACTAATTTGGATATACATGACTAAGAAATCAAAGTCT  446

seq1  AATCCATAACTTCACCCTTTTTTGAGCAATTACTTTGTTGCCCACTTTTA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATAACTTCACCCTTTTTTGAGCAATTACTTTGTTGCCCACTTTTA  496

seq1  GTTTGAAGAGCGTCTCTACTGAGTTCATTCTTAACCAGTTTATTTATTAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAGAGCGTCTCTACTGAGTTCATTCTTAACCAGTTTATTTATTAT  546

seq1  TTTCCATAAATTCCGTATACAATTAAAGTTTGTATAAGTATCAAAAGTCT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATAAATTCCGTATACAATTAAAGTTTGTATAAGTATCAAAAGTCT  596

seq1  ACCATTGACTTTTGCCACCCTTGCTGCTGATGGTTCCCAGGCTTTTCCTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGACTTTTGCCACCCTTGCTGCTGATGGTTCCCAGGCTTTTCCTT  646

seq1  TATGAGAGACGTATAGTTTTTCAGGTGTTTGGGTGAACAATTATACTGGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAGACGTATAGTTTTTCAGGTGTTTGGGTGAACAATTATACTGGG  696

seq1  GATGCTGTAATGGCTCATGTGAGTAAAGGCACTATTGAAGTTTGTCAACA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGTAATGGCTCATGTGAGTAAAGGCACTATTGAAGTTTGTCAACA  746

seq1  GACCCTCACTCACAAAGACCACAGAGACCACCATCACTGAAAACTGCAAG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCACTCACAAAGACCACAGAGACCACCATCACTGAAAACTGCAAG  796

seq1  CGTTTTTATTGTTCCAACATGTTGGGGACCCCTCCCCACCTCTCAGCACG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTTATTGTTCCAACATGTTGGGGACCCCTCCCCACCTCTCAGCACG  846

seq1  CAGGCTAGAGGAGAGACCCAGAACAAAGAAAAAAAACACACTTTTTATAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGAGGAGAGACCCAGAACAAAGAAAAAAAACACACTTTTTATAC  896

seq1  ATTGTAAGGGAAGATTTGGGCAACAGGGTAGCTGGCTTATTCTCATTGGT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAGGGAAGATTTGGGCAACAGGGTAGCTGGCTTATTCTCATTGGT  946

seq1  GTAGCAAGTAACCCTTTCAGACATTGGTTGGTTTGCATAGTAACTAAGTA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAGTAACCCTTTCAGACATTGGTTGGTTTGCATAGTAACTAAGTA  996

seq1  ACCCTTTGGCCTAGTGACTTACTTTGCCTGCCCCCATGGTGCGTTATTAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTGGCCTAGTGACTTACTTTGCCTGCCCCCATGGTGCGTTATTAT  1046

seq1  GATTTGGTCAGCAAAGCAGTAGTACATTTTGAACTTATGGGTCAGCTATT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGTCAGCAAAGCAGTAGTACATTTTGAACTTATGGGTCAGCTATT  1096

seq1  AACGTCACAGCTATTAATATCACAGGGAATTC  1122
      ||||||||||||||||||||||||||||||||
seq2  AACGTCACAGCTATTAATATCACAGGGAATTC  1128


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