BAC Information

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BAC

Clone NameB6Ng01-284N08
Chromosome18 (Build37)
Map Location 56,850,276 - 57,021,625
singlet/doubletdoublet
Overlap geneLmnb1, March3
Upstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171
Downstream geneC330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284N08.bB6Ng01-284N08.g
ACCGA083439GA083440
length9671,079
definitionB6Ng01-284N08.b B6Ng01-284N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,850,276 - 56,851,245)(57,020,554 - 57,021,625)
sequence
gaattcactctgtagatcaggctggcctctaactcagagatccacctgcc
tctgcctcccttatgctaggactaaaggtatgtgccaccaaccacgtcag
gccacatatggtggtttgaatgaaaatcgaccccctaggccctgaggaag
tggcactattagaaggtgtggccttgttggaaaaaacaaaaacaaaaaca
aaaacaaaacactgtcactggagtgtgagctttgagtttcagaagctcaa
gtcaggtccagtgtcactctctcttccagttgtctccagtgtcactctct
cttccagttgtctcctaatttggatgcagcactctcatctcctccaccat
gcccagcttgtttttgtttttgttttgttttttcgagacagagtttctct
atgtagccctggctgtcctggaacttactttgtagaccaggctggcctcc
aactcagaaatccacctgcctctgcctcctgagtgctgggattaaaggcg
tcatacgccaccactgcccagctttccttttcacttggtgatttttcact
ttggtctggccacactgccacattctaggtaaggatcttgtgtcacttgg
tgttttgtctgagatgaactacttaagggaagaagggtttgttttcgctc
acggggttaaaggttgcagtccttagtggttacttggctctgttgtttct
gggctcctgtatgtgagacataagactcaagagagtcatggcagacagga
ggagggacaggagaggtgagggtaagggactagagcccatgatatgccct
ttaaagggaatagcccagtgactgctttcctccaactaggcccccatctc
ccaaatattccattcagctactgtctcagtgttctactgttctgaagaga
catcattgatcatggcatctctcacaaaggaaagcattttattttaaact
gtagtttaccattattt
gaattcactatgtagcctagcctggcctcttaccgcatcctcctgtctcc
agcatgaatgctgaagtcactggcattcatggaccaccacatccagctcc
tcgtttattctttcaaaaccatcaattctgagattgaaaatcagtccaca
gggactggtgttgggtatctgtaaacatgattctcttagcaagtttgaag
agaagaaagtggctctactagggaaactagtaggtaaatacgaaggaaaa
acagaaagtccttatggctcaacaagagagacagcagaaagaggtgagat
ataagtgcaagctttaaaacatcgttattctggggccatttaacttaaag
caaaacaaccctgtgcaccgtaacaaacttggaagccagcgccatccaca
gagtgtcattcttctacccagagtaatgacccggaaacattcagaaaggg
ataaattatgttcaaaaaatactacgtaagcaaatggaggcaaacggttg
ttttagaaaatagcatttttttaaatgttaccttttttttaaacctcaaa
tgcctacgaaatctgattagtcagtaaattttacttataaatctttaata
acttttatttttgtcttccatattttttctgcttgatgtttagtttttga
agatttatttttattgtatgtatatgagtgttttcctcacatcccatgtc
tgtgcctggtgctgggggaggcattggattccctggaactggagtgatgg
acagtgatgagccatcatgtggtactaagaatccagctgcggttttctgc
aagaacaagtgctcttaactgctgagccatcgccattgctccagctcctc
tccttggttctttataaacaaaactctaccttgctactgaggaccaacaa
caagatataaactttcatttctgaattaagcactgggatacacttaatta
tttgaaaaagcaaactgagaagaaagaggtctttattgttgggtttttat
tgcactttcttctaagacataatgttctcttcaaatcaacattacctgga
gaataaaatttacatgtatgagtatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_56850276_56851245
seq2: B6Ng01-284N08.b_69_1009

seq1  GCCTCTAACTCAGAGATCCACCTGCCTCTGCCTCCCTTATGCTAGGACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAACTCAGAGATCCACCTGCCTCTGCCTCCCTTATGCTAGGACTA  50

seq1  AAGGTATGTGCCACCAACCACGTCAGGCCACATATGGTGGTTTGAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATGTGCCACCAACCACGTCAGGCCACATATGGTGGTTTGAATGAA  100

seq1  AATCGACCCCCTAGGCCCTGAGGAAGTGGCACTATTAGAAGGTGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGACCCCCTAGGCCCTGAGGAAGTGGCACTATTAGAAGGTGTGGCCT  150

seq1  TGTTGGAAAAAACAAAAACAAAAACAAAAACAAAACACTGTCACTGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAAAAAACAAAAACAAAAACAAAAACAAAACACTGTCACTGGAGT  200

seq1  GTGAGCTTTGAGTTTCAGAAGCTCAAGTCAGGTCCAGTGTCACTCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTTTGAGTTTCAGAAGCTCAAGTCAGGTCCAGTGTCACTCTCTCT  250

seq1  TCCAGTTGTCTCCAGTGTCACTCTCTCTTCCAGTTGTCTCCTAATTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTGTCTCCAGTGTCACTCTCTCTTCCAGTTGTCTCCTAATTTGGA  300

seq1  TGCAGCACTCTCATCTCCTCCACCATGCCCAGCTTGTTTTTGTTTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCACTCTCATCTCCTCCACCATGCCCAGCTTGTTTTTGTTTTTGTT  350

seq1  TTGTTTTTTCGAGACAGAGTTTCTCTATGTAGCCCTGGCTGTCCTGGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTCGAGACAGAGTTTCTCTATGTAGCCCTGGCTGTCCTGGAAC  400

seq1  TTACTTTGTAGACCAGGCTGGCCTCCAACTCAGAAATCCACCTGCCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTGTAGACCAGGCTGGCCTCCAACTCAGAAATCCACCTGCCTCTG  450

seq1  CCTCCTGAGTGCTGGGATTAAAGGCGTCATACGCCACCACTGCCCAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGAGTGCTGGGATTAAAGGCGTCATACGCCACCACTGCCCAGCTT  500

seq1  TCCTTTTCACTTGGTGATTTTTCACTTTGGTCTGGCCACACTGCCACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCACTTGGTGATTTTTCACTTTGGTCTGGCCACACTGCCACATT  550

seq1  CTAGGTAAGGATCTTGTGTCACTTGGTGTTTTGTCTGAGATGAACTACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTAAGGATCTTGTGTCACTTGGTGTTTTGTCTGAGATGAACTACTT  600

seq1  AAGGGAAGAAGGGTTTGTTTTCGCTCACGGGGTTAAAGGTTGCAGTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGAAGGGTTTGTTTTCGCTCACGGGGTTAAAGGTTGCAGTCCTT  650

seq1  AGTGGTTACTTGGCTCTGTTGTTTCTGGGCTCCTGTATGTGAGACATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTACTTGGCTCTGTTGTTTCTGGGCTCCTGTATGTGAGACATAAG  700

seq1  ACTCAAGAGAGTCATGGCAGACAGGAGGAGGGACAGGAGAGGTGAGGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGAGAGTCATGGCAGACAGGAGGAGGGACAGGAGAGGTGAGGGTA  750

seq1  AGGGACTAGAG-CCATGATATGCCCTTTAAAGGGAATAGCCCAGTGACTG  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTAGAGCCCATGATATGCCCTTTAAAGGGAATAGCCCAGTGACTG  800

seq1  C-TTCCTCCAACTAGGCCCCCATCTCCC-AATATTCCATTCAGCTACTGT  847
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTTCCTCCAACTAGGCCCCCATCTCCCAAATATTCCATTCAGCTACTGT  850

seq1  CTCAGTGTTCTACTGTTCTGAAGAGACATCA-TGATCATGGCAACTCTCA  896
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  CTCAGTGTTCTACTGTTCTGAAGAGACATCATTGATCATGGCATCTCTCA  900

seq1  CAAAGGAAAGCA-TTTATTTTAAACTGTAGTTTAGCATTATTTTAAACTG  945
      |||||||||||| ||||||||||||||||||||| ||||||         
seq2  CAAAGGAAAGCATTTTATTTTAAACTGTAGTTTACCATTAT---------  941

seq1  TAGTTTCAGACATTTGGTCCATTAT  970
                               
seq2  -------------------------  941

seq1: chr18_57020554_57021625
seq2: B6Ng01-284N08.g_67_1145 (reverse)

seq1  TAAAATACTTAATTACATGT-AATTTTA-TCTC--AGTATTGTTGATTTG  46
      ||||||||| |  ||||||| ||||||| ||||   ||| ||||||||||
seq2  TAAAATACTCA--TACATGTAAATTTTATTCTCCAGGTAATGTTGATTTG  48

seq1  AAGAG-ACATTATGTCTTAGAAGAAAGTGCATTAAAAA-CCAACAAT-AA  93
      ||||| ||||||||||||||||||||||||| |||||| |||||||| ||
seq2  AAGAGAACATTATGTCTTAGAAGAAAGTGCAATAAAAACCCAACAATAAA  98

seq1  GACCTCTTTCTTCTCAGTTTGCTTTTTCAAAATATTTAGTGTAT-CCAGT  142
      |||||||||||||||||||||||||||||||  ||| ||||||| |||||
seq2  GACCTCTTTCTTCTCAGTTTGCTTTTTCAAATAATTAAGTGTATCCCAGT  148

seq1  GCTTATTTCAGAAATG-AAGTTTATATCTTGTTGTTGGTCCTCAGTAGCA  191
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  GCTTAATTCAGAAATGAAAGTTTATATCTTGTTGTTGGTCCTCAGTAGCA  198

seq1  AGGTAGAGTTTTGTTTATAAAGAACCAAGGAGAGGAGCTGGAGCAATGGC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAGTTTTGTTTATAAAGAACCAAGGAGAGGAGCTGGAGCAATGGC  248

seq1  GATGGCTCAGCAGTTAAGAGCACTTGTTCTTGCAGAAAACCGCAGCTGGA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAGCAGTTAAGAGCACTTGTTCTTGCAGAAAACCGCAGCTGGA  298

seq1  TTCTTAGTACCACATGATGGCTCATCACTGTCCATCACTCCAGTTCCAGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTACCACATGATGGCTCATCACTGTCCATCACTCCAGTTCCAGG  348

seq1  GAATCCAATGCCTCCCCCAGCACCAGGCACAGACATGGGATGTGAGGAAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAATGCCTCCCCCAGCACCAGGCACAGACATGGGATGTGAGGAAA  398

seq1  ACACTCATATACATACAATAAAAATAAATCTTCAAAAACTAAACATCAAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCATATACATACAATAAAAATAAATCTTCAAAAACTAAACATCAAG  448

seq1  CAGAAAAAATATGGAAGACAAAAATAAAAGTTATTAAAGATTTATAAGTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAATATGGAAGACAAAAATAAAAGTTATTAAAGATTTATAAGTA  498

seq1  AAATTTACTGACTAATCAGATTTCGTAGGCATTTGAGGTTTAAAAAAAAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACTGACTAATCAGATTTCGTAGGCATTTGAGGTTTAAAAAAAAG  548

seq1  GTAACATTTAAAAAAATGCTATTTTCTAAAACAACCGTTTGCCTCCATTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATTTAAAAAAATGCTATTTTCTAAAACAACCGTTTGCCTCCATTT  598

seq1  GCTTACGTAGTATTTTTTGAACATAATTTATCCCTTTCTGAATGTTTCCG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACGTAGTATTTTTTGAACATAATTTATCCCTTTCTGAATGTTTCCG  648

seq1  GGTCATTACTCTGGGTAGAAGAATGACACTCTGTGGATGGCGCTGGCTTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTACTCTGGGTAGAAGAATGACACTCTGTGGATGGCGCTGGCTTC  698

seq1  CAAGTTTGTTACGGTGCACAGGGTTGTTTTGCTTTAAGTTAAATGGCCCC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTGTTACGGTGCACAGGGTTGTTTTGCTTTAAGTTAAATGGCCCC  748

seq1  AGAATAACGATGTTTTAAAGCTTGCACTTATATCTCACCTCTTTCTGCTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAACGATGTTTTAAAGCTTGCACTTATATCTCACCTCTTTCTGCTG  798

seq1  TCTCTCTTGTTGAGCCATAAGGACTTTCTGTTTTTCCTTCGTATTTACCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTGTTGAGCCATAAGGACTTTCTGTTTTTCCTTCGTATTTACCT  848

seq1  ACTAGTTTCCCTAGTAGAGCCACTTTCTTCTCTTCAAACTTGCTAAGAGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTTCCCTAGTAGAGCCACTTTCTTCTCTTCAAACTTGCTAAGAGA  898

seq1  ATCATGTTTACAGATACCCAACACCAGTCCCTGTGGACTGATTTTCAATC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTTACAGATACCCAACACCAGTCCCTGTGGACTGATTTTCAATC  948

seq1  TCAGAATTGATGGTTTTGAAAGAATAAACGAGGAGCTGGATGTGGTGGTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTGATGGTTTTGAAAGAATAAACGAGGAGCTGGATGTGGTGGTC  998

seq1  CATGAATGCCAGTGACTTCAGCATTCATGCTGGAGACAGGAGGATGCGGT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATGCCAGTGACTTCAGCATTCATGCTGGAGACAGGAGGATGCGGT  1048

seq1  AAGAGGCCAGGCTAGGCTACATAGTGAATTC  1072
      |||||||||||||||||||||||||||||||
seq2  AAGAGGCCAGGCTAGGCTACATAGTGAATTC  1079