BAC Information

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BAC

Clone NameB6Ng01-285C05
Chromosome17 (Build37)18 (Build37)
Map Location 68,581,903 - 68,583,04149,552,301 - 49,552,867
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePtprm, Lrrc30, Lama1, Arhgap28
Downstream geneD930040M24Rik, EG622645, Epb4.1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285C05.bB6Ng01-285C05.g
ACCGA083662GA083663
length1,138980
definitionB6Ng01-285C05.b B6Ng01-285C05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,581,903 - 68,583,041)(49,552,301 - 49,552,867)
sequence
gaattctttacacagagaaaaactaaaaccacagcacacacttttaaaga
tacgatgtcaaggcttactccagtcttatgataaggaagccatttctaga
taatatcttggggttttaatattaacaaaggtgagcatattgactcaatt
ctaacaggaacatggaatttttctctaattaattttctcattaacatttt
cctttggataccaaagtcttcatttgatcttcacatgggtcataaaaata
ccccttgggattttcagagcaaagttctggagacacactggagcccccat
gcaagactcaatccctaaactaattatctttctaaagataattaagaaaa
tcactatcaacataaaaacagattaaaatagctcttgtttcctattgtaa
ctgttctttagaattccctaatcactgattatgttttctgatctgattgt
agaaaaaaactaccaagttgaatgttagttcactattgtaagtggtacaa
tatttttcacattggactaatgtaaggagtttactattgtaggtagttca
ctattgtagatagttcactatgataggtagtgcactattgtaggtagttt
actatttttagtagctcactattgtaagtaatgaactattgtaagtggtg
caattttgtaagtagttcactattatcataagtagtcactaccataagta
gtacactactactataagtagtacactattataagtagtattctactgta
agtagttcactatagtaagaatatattgtctgtaggacatgtgaaattga
gagccaatattctagacttaaacctgtttattgtttgtgatactcattat
aacagcaggaaacagactaagacatccaatctttggagtctcagtctttg
atttgttttaacaatagtatcaaatctaacaaataacaaaggggaaatac
cagtggctccaactaggaagactatgcctttccatgacagtgtaaacaca
gaagactgtgcctttccatggcagttatgatacaacccatgcagatatta
cccttggttatgtggtagcaagtcctttagctgaatatttctgcctcctt
acggcatgtgtctgaatcacagcatgtaatctagcttc

gaattcatcatgcaagtgaggaatgtgaaaaggattgacaagcaaacagc
cctgaccttcagctcagaaaatcatccatcaaagaacgaaggctactgtg
ccatcagaaggaagaggaagggaaagctggggacattcaaccaagactga
gacagccactcattgagtccattgatattaagatatatttttatttggaa
attgggtccattgatattaagaaatattaaggaaaagtaattgttgcttc
ctgttatttttgttgttagagttgggattctgttcttgttttttgaagga
ttactttcttgtttttttctaggacatacttctcctttttgtgttggagt
tttccctttattatcctttgaagggcttgattagtggaaagatattgtgt
gaatttggttttgtcatggaatactttggtttcttcatctatgataagtg
agagttttgctgggtatagtagcctgggctggcatttgtgttgtcttagg
gtctgtataacatctatgcaggatcttctggctttcatagtctctggtga
gaagtctggtataattctattaggtctgcctttatatgttacttgacctt
tttcccttaatgtttttactattttttaaagaaattttttatctttattt
agtgaatttgttgttctgattattatgtgtagggagaagtttcttttctg
gtccagtctatttggaattctataggctttttgtatgttcacggccatct
ctttctttaggttagggaaagttttcttctataatttcgttgaagatatt
tactcgccctttaagttgaaaatcttcattttcatcgatacctattatcc
ttaggttgggccttctcattgtgtcctggatttcctgggatgttttgagt
taggatcttttttgcatttgccttttctttgattgttgtgttcatgtttc
tgatggatttttatgcactgaaattttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_68581903_68583041
seq2: B6Ng01-285C05.b_45_1182

seq1  GAATTCTTTACACAGAGAAAAACTAAAACCACAGCACACACTTTTAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACACAGAGAAAAACTAAAACCACAGCACACACTTTTAAAGA  50

seq1  TACGATGTCAAGGCTTACTCCAGTCTTATGATAAGGAAGCCATTTCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGATGTCAAGGCTTACTCCAGTCTTATGATAAGGAAGCCATTTCTAGA  100

seq1  TAATATCTTGGGGTTTTAATATTAACAAAGGTGAGCATATTGACTCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCTTGGGGTTTTAATATTAACAAAGGTGAGCATATTGACTCAATT  150

seq1  CTAACAGGAACATGGAATTTTTCTCTAATTAATTTTCTCATTAACATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGGAACATGGAATTTTTCTCTAATTAATTTTCTCATTAACATTTT  200

seq1  CCTTTGGATACCAAAGTCTTCATTTGATCTTCACATGGGTCATAAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGATACCAAAGTCTTCATTTGATCTTCACATGGGTCATAAAAATA  250

seq1  CCCCTTGGGATTTTCAGAGCAAAGTTCTGGAGACACACTGGAGCCCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGGGATTTTCAGAGCAAAGTTCTGGAGACACACTGGAGCCCCCAT  300

seq1  GCAAGACTCAATCCCTAAACTAATTATCTTTCTAAAGATAATTAAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACTCAATCCCTAAACTAATTATCTTTCTAAAGATAATTAAGAAAA  350

seq1  TCACTATCAACATAAAAACAGATTAAAATAGCTCTTGTTTCCTATTGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATCAACATAAAAACAGATTAAAATAGCTCTTGTTTCCTATTGTAA  400

seq1  CTGTTCTTTAGAATTCCCTAATCACTGATTATGTTTTCTGATCTGATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTTAGAATTCCCTAATCACTGATTATGTTTTCTGATCTGATTGT  450

seq1  AGAAAAAAACTACCAAGTTGAATGTTAGTTCACTATTGTAAGTGGTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAACTACCAAGTTGAATGTTAGTTCACTATTGTAAGTGGTACAA  500

seq1  TATTTTTCACATTGGACTAATGTAAGGAGTTTACTATTGTAGGTAGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCACATTGGACTAATGTAAGGAGTTTACTATTGTAGGTAGTTCA  550

seq1  CTATTGTAGATAGTTCACTATGATAGGTAGTGCACTATTGTAGGTAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTAGATAGTTCACTATGATAGGTAGTGCACTATTGTAGGTAGTTT  600

seq1  ACTATTTTTAGTAGCTCACTATTGTAAGTAATGAACTATTGTAAGTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTTAGTAGCTCACTATTGTAAGTAATGAACTATTGTAAGTGGTG  650

seq1  CAATTTTGTAAGTAGTTCACTATTATCATAAGTAGTCACTACCATAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGTAAGTAGTTCACTATTATCATAAGTAGTCACTACCATAAGTA  700

seq1  GTACACTACTACTATAAGTAGTACACTATTATAAGTAGTATTCTACTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTACTACTATAAGTAGTACACTATTATAAGTAGTATTCTACTGTA  750

seq1  AGTAGTTCACTATAGTAAGAATATATTGTCTGTAGGACATGTGAAATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTCACTATAGTAAGAATATATTGTCTGTAGGACATGTGAAATTGA  800

seq1  GAGCCAATATTCTAGACTTAAACCTGTTTATTGTTTGTGATACTCATTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAATATTCTAGACTTAAACCTGTTTATTGTTTGTGATACTCATTAT  850

seq1  AACAGCAGGAAACAGACTAAGACATCCAATCTTTGGAGTCTCAGTCTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAGGAAACAGACTAAGACATCCAATCTTTGGAGTCTCAGTCTTTG  900

seq1  ATTTGTTTTAACAATAGTATCAAATCTAACAAATAACAAAGGGGAAATAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTTAACAATAGTATCAAATCTAACAAATAACAAAGGGGAAATAC  950

seq1  CAGTGGCTCCAACTAGGGAAGACTATGCC-TTCCATGACAGTGTAAACAC  999
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  CAGTGGCTCCAACTA-GGAAGACTATGCCTTTCCATGACAGTGTAAACAC  999

seq1  AGAAGACTGTGCC-TTCCATGGCAG-TATGAATACAACCAAGGCAGATAT  1047
      ||||||||||||| ||||||||||| |||| |||||||| | ||||||||
seq2  AGAAGACTGTGCCTTTCCATGGCAGTTATG-ATACAACCCATGCAGATAT  1048

seq1  --ACCTTGGTAATGTTGGGTAGCAAGGTCCTTAGCTTGATATTTCTGCTC  1095
         ||||||| ||||  |||||||||  | ||||||  |||||||||| |
seq2  TACCCTTGGTTATGT--GGTAGCAAGTCCTTTAGCTGAATATTTCTGC-C  1095

seq1  TCTTTACAGCATGGTGTCTAGATCACAGCATGGTATCTAGCTTC  1139
      || |||| |||| ||||||  |||||||||||  ||||||||||
seq2  TCCTTACGGCAT-GTGTCTGAATCACAGCATGTAATCTAGCTTC  1138


seq1: chr18_49552301_49552867
seq2: B6Ng01-285C05.g_428_1011 (reverse)

seq1  ACACAACAGTCAAAGAAAATACAAAATGC-AAAAGGATCCTAACTCAAAA  49
      |||||||| ||||||||||  | |||||| |||| |||||||||||||||
seq2  ACACAACAATCAAAGAAAAGGC-AAATGCAAAAAAGATCCTAACTCAAAA  49

seq1  CAT-CCAGGTAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATA  98
      ||| ||||| ||||||||||||||||||||| || |||||| ||||||||
seq2  CATCCCAGGAAATCCAGGACACAATGAGAAGGCCCAACCTAAGGATAATA  99

seq1  GGAATTGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCTAATATCTT  148
      || || ||||| ||||||||||||||||||||||||| ||  ||||||||
seq2  GGTATCGATGAAAATGAAGATTTTCAACTTAAAGGGCGAGTAAATATCTT  149

seq1  CAACAAAATAATAGAAGAAAAC-TTCCCAAACATAAAAAAAGAGATGCCC  197
      |||| |||| |||||||||||| ||||| ||| |||| ||||||||| ||
seq2  CAACGAAATTATAGAAGAAAACTTTCCCTAACCTAAAGAAAGAGATGGCC  199

seq1  ATGATCATACAAGAAGCATACAGAACTCCAAATAGACTGGACCAGAAAAG  247
       ||| ||||||| |||| || |||| ||||||||||||||||||||||||
seq2  GTGAACATACAAAAAGCCTATAGAATTCCAAATAGACTGGACCAGAAAAG  249

seq1  AAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACTAAATAAAG  297
      ||| | ||||| ||||||||||||||||||||||||| ||||||||||||
seq2  AAACTTCTCCCTACACATAATAATCAGAACAACAAATTCACTAAATAAAG  299

seq1  AT---------------AGAATATTAAAAGCAGTAAGGGAGAAAGGTCAA  332
      ||               | |||| ||||| || ||||||| |||||||||
seq2  ATAAAAAATTTCTTTAAAAAATAGTAAAAACATTAAGGGAAAAAGGTCAA  349

seq1  GTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGA  382
      |||||||||||||| || ||||  ||||||| ||||||||| ||||||||
seq2  GTAACATATAAAGGCAGACCTAATAGAATTATACCAGACTTCTCACCAGA  399

seq1  GACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAG  432
      ||||||||||||||||||| |||| | ||||||||||||||| |||||| 
seq2  GACTATGAAAGCCAGAAGATCCTGCATAGATGTTATACAGACCCTAAGAC  449

seq1  AACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACC  482
      ||||||||||||||||||||||||||||||| || ||||||||| ||| |
seq2  AACACAAATGCCAGCCCAGGCTACTATACCCAGCAAAACTCTCACTTATC  499

seq1  ATAGATGGAGAAACCAAAGTATTCCACGACAAAACCAAGTTCACACAATA  532
      ||||||| |||||||||||||||||| ||||||||||| |||||||||||
seq2  ATAGATGAAGAAACCAAAGTATTCCATGACAAAACCAAATTCACACAATA  549

seq1  TCTTTCCACGAATCCAGCCCTTCAAAGGATAATAA  567
      ||||||||| |||| ||||||||||||||||||||
seq2  TCTTTCCACTAATCAAGCCCTTCAAAGGATAATAA  584


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