BAC Information

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BAC

Clone NameB6Ng01-285M23
Chromosome18 (Build37)
Map Location 55,826,427 - 55,952,172
singlet/doubletdoublet
Overlap geneLOC667401
Upstream geneEG545257, LOC100042489, Zfp608, LOC100043089
Downstream geneLOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285M23.bB6Ng01-285M23.g
ACCGA084163GA084164
length1,1661,116
definitionB6Ng01-285M23.b B6Ng01-285M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,951,008 - 55,952,172)(55,826,427 - 55,827,545)
sequence
gaattctgcacctacatccttttcactcatcttttgatgatgaattattt
ttgggtgtctttacagtagtgtgtgtatgagacatagtctcacacatgag
taatggactgtaattaattaccctgttatatatgctaacataatgctaca
ttgaagagtattgaagattgccacattaattttttgccaaccgtattcaa
ttgggtgtatcagacttaggagagaaagcactattgttaccatagacagt
tcttattatggtctatggaaggcgtggcgtttttgtggaaaaaggaagtt
aaagtggagctattacaggagagcaatggacaaggagaagtcagttcaaa
atgaactacaatagaaagtccccacaaatatatgtagcccatgagagagt
ccaagaacagagcagtcctggctacttatgatattctctatagaattaaa
aagatgttatgggtatataatacttcttacagaaaaatgaggaaaaataa
ttatcagaattgggactgtgagaaaagagcaagtgaaaaaatacttaaca
atatgctttcttacacctgctgtagacactgacatctctttcaataataa
atcagctttgaaaactgtgttcccgagctggtggagattttggatcatcg
aatcaaatgtatgggagagataagtacagctgaatagccttttgttttta
tatgtgacattttagaaactgtaaggcatggacaagtaataaggggagat
catgagaagctaacccaacttagagggactttatgacttacagggcctaa
attttctttcttttttatttcatttttctcatacaatatatagttgtcat
attcttcttctccccaaaatctcccagattctccctacttcactaatttc
acactttctcttttaacaaacaaattacacacaaacaaacaacaggtcaa
aatagtgtcccccaccccccaaacccaaacagacaaaagtttaaacaaac
aaaacaagccaaggtggaaaaataaaggacagaagttcacacctcgagtg
agagaagaggagagagatgagaggaagacgaaggccagaggcaagattgt
tcttttgtattagcccacctacccactggaacaggaagtctgccttgcat
cagttatacacagtga
gaattcctgatttttactcaaaaaaaaaaaaaaaagtcatttgggattcg
ttttagaggctaatcgtgtggttggtggatttggaaatggtagaataaag
atgggttagctttcttttcccaagcagtttactatgtgtgtagcagtcca
tcctgagagttttctttcacatcaaagaatatggagggagatttgaaaaa
acaagatcctggctgtaaggattagaacttgtctgcagcagttctttctc
tgatggcttctatcctctctctaaacagaagtcttgttctccccattttt
ttgaacctatgattaccaacatcttcaaaagaacctgtgcctatttagtc
acgatatctgttcttcatacccctaatctcttgcccatctcttacccctg
tctgttctactgtcagcacagccactagcctggtccttcacttcttatgt
ccctatcttactctccttccctcccccttctcctccttcttcttccacta
ctttttattcagtatgtacgatgtaacattttctaaatgtattccatggc
aaaaataatgcatgcacaatgagatactctgatgaactgcagttgaccta
tgacacacaacaggatattgtaatgaactgcagctgacccatgaacccag
tttccacggttttcatccttctgtcactcttttgtcatctttggttctaa
agcctctgaaagccacactcattcttgtttcataatattataagtgactt
tcaagcgctgtgaaatgcacaaatgaggcagggtatggaggtacatgtct
ttaatcccagcactggaaggcagaggtgggtgtatctatacagggtgagt
ttgaggctagtctaacctacatagtaaatttcagcaagcccaggaccaca
cagtgagactctgtctcagacaaaacgaaagcaaaacacaatcttgcaag
tctcgctcacatgaaagcctaaacatgacctaaacaagacagttctagat
agaccaccaatacctaacgaaaacttgaggattgatgagatcagagacta
tagtctttcccccaagaaaaagtcccaaattcaatattgaatgatcagcc
tagaaacatgcataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_55951008_55952172
seq2: B6Ng01-285M23.b_47_1212 (reverse)

seq1  TCACTGTGTATAACTAAATTCCAAGGCAGGCTTCTTGTT-CAGT-GGTA-  47
      ||||||||||||||| |  | |||||||| |||| |||| |||| |||| 
seq2  TCACTGTGTATAACTGA--TGCAAGGCAGACTTCCTGTTCCAGTGGGTAG  48

seq1  GTTGGCTAATACAAAAGGAACATTCTTTCTCTCTCTCTCTC-TCTCTCTC  96
      || ||||||||||||| ||||| |||| | ||||  |  || |||  |||
seq2  GTGGGCTAATACAAAA-GAACAATCTTGC-CTCTGGCCTTCGTCTTCCTC  96

seq1  TC-TCTCTCTCTCTC-TCTCTCTCTCTGTGTGTGAACTTCTTGTTCTGTA  144
      || |||||||| ||| |||||| |||   ||||||||||| ||| || ||
seq2  TCATCTCTCTC-CTCTTCTCTCACTCGAGGTGTGAACTTC-TGTCCTTTA  144

seq1  TTTTTCCACCTTG--CTGTTTTGTTTGTTTAAACTTTTGTCTGTTTGGTT  192
      |||||||||||||   |||||||||||||||||||||||||||||||| |
seq2  TTTTTCCACCTTGGCTTGTTTTGTTTGTTTAAACTTTTGTCTGTTTGGGT  194

seq1  TTGGGGGGTGGGGGACACTATTTTGACCTGTTTGTTTGTTTGTGTGTAAT  242
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGGGGGGTGGGGGACACTATTTTGACCTG-TTGTTTGTTTGTGTGTAAT  243

seq1  TTGTTTGTTAAAAGAGAAAGTGTGAAATTAGTGAAGTAGGGAGAATCTGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTAAAAGAGAAAGTGTGAAATTAGTGAAGTAGGGAGAATCTGG  293

seq1  GAGATTTTGGGGAGAAGAAGAATATGACAACTATATATTGTATGAGAAAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTGGGGAGAAGAAGAATATGACAACTATATATTGTATGAGAAAA  343

seq1  ATGAAATAAAAAAGAAAGAAAATTTAGGCCCTGTAAGTCATAAAGTCCCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAAAAAAGAAAGAAAATTTAGGCCCTGTAAGTCATAAAGTCCCT  393

seq1  CTAAGTTGGGTTAGCTTCTCATGATCTCCCCTTATTACTTGTCCATGCCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTGGGTTAGCTTCTCATGATCTCCCCTTATTACTTGTCCATGCCT  443

seq1  TACAGTTTCTAAAATGTCACATATAAAAACAAAAGGCTATTCAGCTGTAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTCTAAAATGTCACATATAAAAACAAAAGGCTATTCAGCTGTAC  493

seq1  TTATCTCTCCCATACATTTGATTCGATGATCCAAAATCTCCACCAGCTCG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTCCCATACATTTGATTCGATGATCCAAAATCTCCACCAGCTCG  543

seq1  GGAACACAGTTTTCAAAGCTGATTTATTATTGAAAGAGATGTCAGTGTCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACAGTTTTCAAAGCTGATTTATTATTGAAAGAGATGTCAGTGTCT  593

seq1  ACAGCAGGTGTAAGAAAGCATATTGTTAAGTATTTTTTCACTTGCTCTTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGTGTAAGAAAGCATATTGTTAAGTATTTTTTCACTTGCTCTTT  643

seq1  TCTCACAGTCCCAATTCTGATAATTATTTTTCCTCATTTTTCTGTAAGAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGTCCCAATTCTGATAATTATTTTTCCTCATTTTTCTGTAAGAA  693

seq1  GTATTATATACCCATAACATCTTTTTAATTCTATAGAGAATATCATAAGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATATACCCATAACATCTTTTTAATTCTATAGAGAATATCATAAGT  743

seq1  AGCCAGGACTGCTCTGTTCTTGGACTCTCTCATGGGCTACATATATTTGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGACTGCTCTGTTCTTGGACTCTCTCATGGGCTACATATATTTGT  793

seq1  GGGGACTTTCTATTGTAGTTCATTTTGAACTGACTTCTCCTTGTCCATTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTTTCTATTGTAGTTCATTTTGAACTGACTTCTCCTTGTCCATTG  843

seq1  CTCTCCTGTAATAGCTCCACTTTAACTTCCTTTTTCCACAAAAACGCCAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGTAATAGCTCCACTTTAACTTCCTTTTTCCACAAAAACGCCAC  893

seq1  GCCTTCCATAGACCATAATAAGAACTGTCTATGGTAACAATAGTGCTTTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCATAGACCATAATAAGAACTGTCTATGGTAACAATAGTGCTTTC  943

seq1  TCTCCTAAGTCTGATACACCCAATTGAATACGGTTGGCAAAAAATTAATG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAAGTCTGATACACCCAATTGAATACGGTTGGCAAAAAATTAATG  993

seq1  TGGCAATCTTCAATACTCTTCAATGTAGCATTATGTTAGCATATATAACA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATCTTCAATACTCTTCAATGTAGCATTATGTTAGCATATATAACA  1043

seq1  GGGTAATTAATTACAGTCCATTACTCATGTGTGAGACTATGTCTCATACA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATTAATTACAGTCCATTACTCATGTGTGAGACTATGTCTCATACA  1093

seq1  CACACTACTGTAAAGACACCCAAAAATAATTCATCATCAAAAGATGAGTG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTACTGTAAAGACACCCAAAAATAATTCATCATCAAAAGATGAGTG  1143

seq1  AAAAGGATGTAGGTGCAGAATTC  1165
      |||||||||||||||||||||||
seq2  AAAAGGATGTAGGTGCAGAATTC  1166

seq1: chr18_55826427_55827545
seq2: B6Ng01-285M23.g_67_1182

seq1  GAATTCCTGATTTTTACTCAAAAAAAAAAAAAAAAGTCATTTGGGATTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATTTTTACTCAAAAAAAAAAAAAAAAGTCATTTGGGATTCG  50

seq1  TTTTAGAGGCTAATCGTGTGGTTGGTGGATTTGGAAATGGTAGAATAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGGCTAATCGTGTGGTTGGTGGATTTGGAAATGGTAGAATAAAG  100

seq1  ATGGGTTAGCTTTCTTTTCCCAAGCAGTTTACTATGTGTGTAGCAGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTAGCTTTCTTTTCCCAAGCAGTTTACTATGTGTGTAGCAGTCCA  150

seq1  TCCTGAGAGTTTTCTTTCACATCAAAGAATATGGAGGGAGATTTGAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAGTTTTCTTTCACATCAAAGAATATGGAGGGAGATTTGAAAAA  200

seq1  ACAAGATCCTGGCTGTAAGGATTAGAACTTGTCTGCAGCAGTTCTTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATCCTGGCTGTAAGGATTAGAACTTGTCTGCAGCAGTTCTTTCTC  250

seq1  TGATGGCTTCTATCCTCTCTCTAAACAGAAGTCTTGTTCTCCCCATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCTTCTATCCTCTCTCTAAACAGAAGTCTTGTTCTCCCCATTTTT  300

seq1  TTGAACCTATGATTACCAACATCTTCAAAAGAACCTGTGCCTATTTAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCTATGATTACCAACATCTTCAAAAGAACCTGTGCCTATTTAGTC  350

seq1  ACGATATCTGTTCTTCATACCCCTAATCTCTTGCCCATCTCTTACCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATATCTGTTCTTCATACCCCTAATCTCTTGCCCATCTCTTACCCCTG  400

seq1  TCTGTTCTACTGTCAGCACAGCCACTAGCCTGGTCCTTCACTTCTTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTACTGTCAGCACAGCCACTAGCCTGGTCCTTCACTTCTTATGT  450

seq1  CCCTATCTTACTCTCCTTCCCTCCCCCTTCTCCTCCTTCTTCTTCCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCTTACTCTCCTTCCCTCCCCCTTCTCCTCCTTCTTCTTCCACTA  500

seq1  CTTTTTATTCAGTATGTACGATGTAACATTTTCTAAATGTATTCCATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATTCAGTATGTACGATGTAACATTTTCTAAATGTATTCCATGGC  550

seq1  AAAAATAATGCATGCACAATGAGATACTCTGATGAACTGCAGTTGACCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATGCATGCACAATGAGATACTCTGATGAACTGCAGTTGACCTA  600

seq1  TGACACACAACAGGATATTGTAATGAACTGCAGCTGACCCATGAACCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACAACAGGATATTGTAATGAACTGCAGCTGACCCATGAACCCAG  650

seq1  TTTCCACGGTTTTCATCCTTCTGTCACTCTTTTGTCATCTTTGGTTCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACGGTTTTCATCCTTCTGTCACTCTTTTGTCATCTTTGGTTCTAA  700

seq1  AGCCTCTGAAAGCCACACTCATTCTTGTTTCATAATATTATAAGTGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGAAAGCCACACTCATTCTTGTTTCATAATATTATAAGTGACTT  750

seq1  TCAAGCGCTGTGAAATGCACAAATGAGGCAGGGTATGGAGGTACATGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCGCTGTGAAATGCACAAATGAGGCAGGGTATGGAGGTACATGTCT  800

seq1  TTAATCCCAGCACTGGAAGGCAGAGGTGGGTGTATCTATACAGGGTGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGCACTGGAAGGCAGAGGTGGGTGTATCTATACAGGGTGAGT  850

seq1  TTGAGGCTAGTCTAACCTACATAGTAAATTTCAGGCAAG-CCAGGACCAC  899
      ||||||||||||||||||||||||||||||||| ||||| ||||||||||
seq2  TTGAGGCTAGTCTAACCTACATAGTAAATTTCA-GCAAGCCCAGGACCAC  899

seq1  ACAGTGAGACTCTGTCTCAGACAAAAACGAAAAGCAAAACACAATCTTGC  949
      |||||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  ACAGTGAGACTCTGTCTCAGAC-AAAACG-AAAGCAAAACACAATCTTGC  947

seq1  AAGTCTCGCTCACATGAAAGCCTAAACATGACCTAAACAAGGACAGTACT  999
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  AAGTCTCGCTCACATGAAAGCCTAAACATGACCTAAACAA-GACAGTTCT  996

seq1  AGATAGA-CACCAATAACTACAGAAAAC-TGAGAAATGATGAGATCAGAA  1047
      ||||||| |||||||| |||  |||||| |||| | |||||||||||| |
seq2  AGATAGACCACCAATACCTAACGAAAACTTGAGGATTGATGAGATCAG-A  1045

seq1  GAC-ATAGTCTT--CCCCAAGAAAAAGTCCCAAATTTCAATATGAAATGA  1094
      ||| ||||||||  |||||||||||||||||||| ||||||||  |||||
seq2  GACTATAGTCTTTCCCCCAAGAAAAAGTCCCAAA-TTCAATATTGAATGA  1094

seq1  TCAGCCCTAGAAACATATGCATACA  1119
      |||| |||||||||  |||||||||
seq2  TCAG-CCTAGAAAC--ATGCATACA  1116