BAC Information

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BAC

Clone NameB6Ng01-285N05
Chromosome18 (Build37)
Map Location 48,818,416 - 48,988,776
singlet/doubletdoublet
Overlap genenone
Upstream geneA730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
Downstream geneDtwd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285N05.bB6Ng01-285N05.g
ACCGA084175GA084176
length919969
definitionB6Ng01-285N05.b B6Ng01-285N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,818,416 - 48,819,335)(48,987,811 - 48,988,776)
sequence
gaattccccttcttcctttctattgtgtatatatatattccactctctaa
ttttcaaccttccttaatatttattcctcatgtcttaaaatctcattccc
agagaacagctgcttaaaatttcaccatctgtatatacttcattttcttt
gtcaatttgtttgttggtgaatttagtttggctccaatttctagccctgt
gattccattcccttattgtagttaatgttatctgtaacttgggtgtttct
acctgtccactttgttctaactaatgattctgagacttcttatatatgaa
ttaatgcttaggtcaatcgctttggccctttcccaactagaccgtatctc
aatagtccatttattctattttaagtacaccacatggctggttaccgtcc
actcagtttcatgtgtcttgatcatcctcagagttaggagcaaatctctg
gggcctaattttttttcctcaaaatttctctctcttgactggttgttcca
ctttctaatcttgcctcatctcttttaccagtcagtctgttactaacctg
tgatgcttccattcattacaaaagattatctgtacaccttaatgtgaaga
aggcaactacaagcatgtacatgcagcaatctctggagtctccctttata
cttattcctccccttagtcccttcatccctgtcttcctcctgttcctttc
cattcttccctctttgtttttccttttctttcctttttctcttttctttc
atcttgtgggcattttcccattaaatgttccctatgttacacacatacaa
aagcacacacacacacacacacacacacacacacacaattgatgaatatt
gtttgttctttcttcccttcaaggagcttgattcaattcctacttaaaag
agataaataaaaatgttct

gaattcataaggaagaagctgagacagatgctaggcactggaaaaacact
aggcacaaacaggctgtagctaacaaagggcaagaagatttgctgtagga
cagggcagtgggtcaaacatttaaaaacatgggttcttcaaattcttaca
tctcccaggatgcccatctttctgaaaccatctacaagccccatgagtaa
caggaagaatttgtagataggagatgaccaaaaaacagacacttgcgaat
aaacaagaacaactgctaatcatttaaaattaagttttactgttaatcta
ggagtcatagtgtgaagtcatacaaaagatgatcattaagaacttccgga
atattggctattaagtcagtaaaaatcagaagcaaccctcaaaaacattt
tctcttcaaaagattaaacaaatgaatttactttgtagttaatttatttt
ttattatcttttatttttaacccttattgggggggggatcgaatatttca
catttgttgctttcatatttggatgaattgagtgctaggatcaatattgt
aaatagagttttttgttgtcatggttttagttcattagaccggtttccat
ctaaggaacactgtaaactttgttttaaatctattgtaaggccagccttg
tatacatatttattttctcccaatgatgataatttaattttcgcaagttg
atgcttttcttataatctttcttttgagatgtattccaatgtaaatcagc
caggaaggagactagatggcattaagttgtttatggagttcctaaagtat
aggtcagctgttagaataaataacacattctgactaaagggttgtgagat
taccataggcatcatctttagctatatttatgtttcagagcccagtattt
agatgtctaattagatgggaaaatgtgacttttggcagccttttttattt
atggtacttgggggattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_48818416_48819335
seq2: B6Ng01-285N05.b_49_967

seq1  GAATTCCCCTTCTTCCTTTCTATTGTGTATATATATATTCCACTCTCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTTCTTCCTTTCTATTGTGTATATATATATTCCACTCTCTAA  50

seq1  TTTTCAACCTTCCTTAATATTTATTCCTCATGTCTTAAAATCTCATTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACCTTCCTTAATATTTATTCCTCATGTCTTAAAATCTCATTCCC  100

seq1  AGAGAACAGCTGCTTAAAATTTCACCATCTGTATATACTTCATTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAGCTGCTTAAAATTTCACCATCTGTATATACTTCATTTTCTTT  150

seq1  GTCAATTTGTTTGTTGGTGAATTTAGTTTGGCTCCAATTTCTAGCCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTTGTTTGTTGGTGAATTTAGTTTGGCTCCAATTTCTAGCCCTGT  200

seq1  GATTCCATTCCCTTATTGTAGTTAATGTTATCTGTAACTTGGGTGTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCATTCCCTTATTGTAGTTAATGTTATCTGTAACTTGGGTGTTTCT  250

seq1  ACCTGTCCACTTTGTTCTAACTAATGATTCTGAGACTTCTTATATATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCCACTTTGTTCTAACTAATGATTCTGAGACTTCTTATATATGAA  300

seq1  TTAATGCTTAGGTCAATCGCTTTGGCCCTTTCCCAACTAGACCGTATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTTAGGTCAATCGCTTTGGCCCTTTCCCAACTAGACCGTATCTC  350

seq1  AATAGTCCATTTATTCTATTTTAAGTACACCACATGGCTGGTTACCGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCCATTTATTCTATTTTAAGTACACCACATGGCTGGTTACCGTCC  400

seq1  ACTCAGTTTCATGTGTCTTGATCATCCTCAGAGTTAGGAGCAAATCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTTTCATGTGTCTTGATCATCCTCAGAGTTAGGAGCAAATCTCTG  450

seq1  GGGCCTAATTTTTTTTCCTCAAAATTTCTCTCTCTTGACTGGTTGTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTAATTTTTTTTCCTCAAAATTTCTCTCTCTTGACTGGTTGTTCCA  500

seq1  CTTTCTAATCTTGCCTCATCTCTTTTACCAGTCAGTCTGTTACTAACCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAATCTTGCCTCATCTCTTTTACCAGTCAGTCTGTTACTAACCTG  550

seq1  TGATGCTTCCATTCATTACAAAAGATTATCTGTACACCTTAATGTGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTCCATTCATTACAAAAGATTATCTGTACACCTTAATGTGAAGA  600

seq1  AGGCAACTACAAGCATGTACATGCAGCAATCTCTGGAGTCTCCCTTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTACAAGCATGTACATGCAGCAATCTCTGGAGTCTCCCTTTATA  650

seq1  CTTATTCCTCCCCTTAGTCCCTTCATCCCTGTCTTCCTCCTGTTCCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCCTCCCCTTAGTCCCTTCATCCCTGTCTTCCTCCTGTTCCTTTC  700

seq1  CATTCTTCCCTCTTTGTTTTTCCTTTTCTTTCCTTTTTCTCTTTTCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCCCTCTTTGTTTTTCCTTTTCTTTCCTTTTTCTCTTTTCTTTC  750

seq1  ATCTTGTGGGCATTTTCCCATTAAATGTTCCCTATGTTACACACATACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTGGGCATTTTCCCATTAAATGTTCCCTATGTTACACACATACAA  800

seq1  AAGCACACACACACACACACACACACACACACACACAATTGATGAATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACACACACACACACACACACACACACACACAATTGATGAATATT  850

seq1  GTTTGTTTCTTTCTTCCCTTCAAGGAGCTTGATTCAATTCCTACTTAAAA  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTG-TTCTTTCTTCCCTTCAAGGAGCTTGATTCAATTCCTACTTAAAA  899

seq1  GAGATAAATAAAAATGTTCT  920
      ||||||||||||||||||||
seq2  GAGATAAATAAAAATGTTCT  919


seq1: chr18_48987811_48988776
seq2: B6Ng01-285N05.g_66_1034 (reverse)

seq1  TAAATCCCCCAAGTACAATAAATAAAAAAGACTG-CAAAAGTCACATTTT  49
      |||||||||||||||| ||||||||||||| ||| |||||||||||||||
seq2  TAAATCCCCCAAGTACCATAAATAAAAAAGGCTGCCAAAAGTCACATTTT  50

seq1  CCCATCTAATTAGACATCTAAATACTGGGCTCTGAAACATAAATATAGCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTAATTAGACATCTAAATACTGGGCTCTGAAACATAAATATAGCT  100

seq1  AAAGATGATGCCTATGGTAATCTCACAA-CCTTTAGTCAG-ATGTGTTAT  147
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  AAAGATGATGCCTATGGTAATCTCACAACCCTTTAGTCAGAATGTGTTAT  150

seq1  TTATTCTAACAGCTGACCTATACTTTAGGAACTCCATAAACAACTTAATG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTAACAGCTGACCTATACTTTAGGAACTCCATAAACAACTTAATG  200

seq1  CCATCTAGTCTCCTTCCTGGCTGATTTACATTGGAATACATCTCAAAAGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAGTCTCCTTCCTGGCTGATTTACATTGGAATACATCTCAAAAGA  250

seq1  AAGATTATAAGAAAAGCATCAACTTGCGAAAATTAAATTATCATCATTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTATAAGAAAAGCATCAACTTGCGAAAATTAAATTATCATCATTGG  300

seq1  GAGAAAATAAATATGTATACAAGGCTGGCCTTACAATAGATTTAAAACAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATAAATATGTATACAAGGCTGGCCTTACAATAGATTTAAAACAA  350

seq1  AGTTTACAGTGTTCCTTAGATGGAAACCGGTCTAATGAACTAAAACCATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACAGTGTTCCTTAGATGGAAACCGGTCTAATGAACTAAAACCATG  400

seq1  ACAACAAAAAACTCTATTTACAATATTGATCCTAGCACTCAATTCATCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAAAACTCTATTTACAATATTGATCCTAGCACTCAATTCATCCA  450

seq1  AATATGAAAGCAACAAATGTGAAATATTCGATCCCCCCCCCAATAAGGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAAGCAACAAATGTGAAATATTCGATCCCCCCCCCAATAAGGGT  500

seq1  TAAAAATAAAAGATAATAAAAAATAAATTAACTACAAAGTAAATTCATTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAAAGATAATAAAAAATAAATTAACTACAAAGTAAATTCATTT  550

seq1  GTTTAATCTTTTGAAGAGAAAATGTTTTTGAGGGTTGCTTCTGATTTTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATCTTTTGAAGAGAAAATGTTTTTGAGGGTTGCTTCTGATTTTTA  600

seq1  CTGACTTAATAGCCAATATTCCGGAAGTTCTTAATGATCATCTTTTGTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTAATAGCCAATATTCCGGAAGTTCTTAATGATCATCTTTTGTAT  650

seq1  GACTTCACACTATGACTCCTAGATTAACAGTAAAACTTAATTTTAAATGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCACACTATGACTCCTAGATTAACAGTAAAACTTAATTTTAAATGA  700

seq1  TTAGCAGTTGTTCTTGTTTATTCGCAAGTGTCTGTTTTTTGGTCATCTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGTTGTTCTTGTTTATTCGCAAGTGTCTGTTTTTTGGTCATCTCC  750

seq1  TATCTACAAATTCTTCCTGTTACTCATGGGGCTTGTAGATGGTTTCAGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACAAATTCTTCCTGTTACTCATGGGGCTTGTAGATGGTTTCAGAA  800

seq1  AGATGGGCATCCTGGGAGATGTAAGAATTTGAAGAACCCATGTTTTTAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGCATCCTGGGAGATGTAAGAATTTGAAGAACCCATGTTTTTAAA  850

seq1  TGTTTGACCCACTGCCCTGTCCTACAGCAAATCTTCTTGCCCTTTGTTAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGACCCACTGCCCTGTCCTACAGCAAATCTTCTTGCCCTTTGTTAG  900

seq1  CTACAGCCTGTTTGTGCCTAGTGTTTTTCCAGTGCCTAGCATCTGTCTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCCTGTTTGTGCCTAGTGTTTTTCCAGTGCCTAGCATCTGTCTCA  950

seq1  GCTTCTTCCTTATGAATTC  966
      |||||||||||||||||||
seq2  GCTTCTTCCTTATGAATTC  969


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