BAC Information

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BAC

Clone NameB6Ng01-286D09
Chromosome18 (Build37)
Map Location 17,525,575 - 17,656,475
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286D09.bB6Ng01-286D09.g
ACCGA084466GA084467
length1,1261,144
definitionB6Ng01-286D09.b B6Ng01-286D09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,525,575 - 17,526,697)(17,655,320 - 17,656,475)
sequence
gaattctttatgataaatacaaagaaaaagtgacagtttttatgatatgg
ctgaaactctatgcaggaaattttttttttgtgcattgaatcacttatga
attctgtgtgatttttttttgtcccaggagtgtaagaaaactgctctttt
tatattactaagtgatgcagtgtgtagcctaaacagatggaaacagcttg
actttaacataagtgttagaatatgcagtataagagtagaaacctacaag
gtgcaactaacaaaaaaaaatctttatcatgaaatgatcaaatttgcctg
gattcattcttttaatataaccttttgataaaattaaggcataatgtcaa
atactttcacctcatgaaaataaaacacaaataacctaataaatggtata
gaatccttactaatattaggtaatttaaaatcattttcacttatgtgcat
gaatttgagtgtctatttgattgtgtgccaaggggtgtagcaccaacagg
gaaccacacatggtatcagaaaccattgaattggagagacaggcagttgt
gaaccaactgacatgggtgtgaagaacagagtttgggccctccaggagag
cagtaagctttgctatttgctgaggaatctttccatcccaaagtagtgtt
tttattgctataaagattttctcttttcaagcaaaaatcccccccaaaaa
aaccaagcaaaacctattggacatgaagtgctttgtcagtgaaaagcagg
aacctttaactgtagtataaattgataagccattattgcataaaatacaa
tttgtagaaaaggtgttgaatgaccattttttttaatatgtgaaactttg
ccttgtgtaatgttatgatcctcatattaacttatcattcccatcttcca
agaaacattcagacatagaagcctatcagttggtgcagttttactattct
cttatcaacatcatacattttttacaaaataaatataaaccaggagtgtt
gttagtggaactggaatggggaggcatagcttgtatactacaagctggag
cagccctggtggagtgtttcttagatactcactagctgaacacagaaggt
cttggagattgctacagcaaagatat
gaattcagtcacatttgcatggtcagctaactggtctctgattattaagg
caaattacactcaattgacaatagttcccaaggtaattataagccttatc
cctgaataataatggtcatacacacccacattgatgattgatgtaactaa
aacttaaagaacttaataagcccatcaatctgtgatcacctaacagatcc
acgctgagtgcctgagataagaaaagtttcaaatggcagcaaagattatg
acaatttttcaaactcatttatctaatgttacacatttaaattttataaa
agaaaactaaaaaaaactttttatttgtgattttttgtaatattgtttta
atgaaaattgctgtatttgttgtacttcccatgtttactttttcagtttt
aatgcctatccttttcacaattacttttgtcatctaatagaaaagttttt
ccaaactttcagactatcttccacactatattgagaaatgctgtaaaatt
tagtatgacctaattttcaaatatgaagagaatgtattgctctaaacctg
acaaaaatgtacttgaagctcagagatttaagaattatttaggacaataa
agattttacttctgtattcttcacagaaacattgaagccattgcaaatct
aaattactaagcataataattctttattttttctttgttttctcatatct
tattttcagttttgtatacacatggcccatggtaagaaagcaattatcac
tttatccttaaagcaggaataagagagaatttaaaaaacacttaatgagg
tttgtagtgttagctataacaagcctcatgtgacacttctgaacccatct
ctggccttcgtaggatctgctttagatctttacaggaagatgtgaggcac
agaaaacaacaacaacaaatcagtaaaggcagagattgatttaccaaatt
agcaagtgacattctttcctagcacctaaaatattatattttgacttctg
acatctgccttgataccctggatgagcagactggctctttatctctgact
actgaatgtctccagtcttgtagtacaaatatccccctcggtcatgtagt
tattttactagaaatgttgtgcatatgtgccttaatgctcatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17525575_17526697
seq2: B6Ng01-286D09.b_47_1172

seq1  GAATTCTTTATGATAAATACAAAGAAAAAGTGACAGTTTTTATGATATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATGATAAATACAAAGAAAAAGTGACAGTTTTTATGATATGG  50

seq1  CTGAAACTCTATGCAGGAAATTTTTTTTTTGTGCATTGAATCACTTATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTCTATGCAGGAAATTTTTTTTTTGTGCATTGAATCACTTATGA  100

seq1  ATTCTGTGTGATTTTTTTTTGTCCCAGGAGTGTAAGAAAACTGCTCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGTGATTTTTTTTTGTCCCAGGAGTGTAAGAAAACTGCTCTTTT  150

seq1  TATATTACTAAGTGATGCAGTGTGTAGCCTAAACAGATGGAAACAGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACTAAGTGATGCAGTGTGTAGCCTAAACAGATGGAAACAGCTTG  200

seq1  ACTTTAACATAAGTGTTAGAATATGCAGTATAAGAGTAGAAACCTACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAACATAAGTGTTAGAATATGCAGTATAAGAGTAGAAACCTACAAG  250

seq1  GTGCAACTAACAAAAAAAAATCTTTATCATGAAATGATCAAATTTGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAACTAACAAAAAAAAATCTTTATCATGAAATGATCAAATTTGCCTG  300

seq1  GATTCATTCTTTTAATATAACCTTTTGATAAAATTAAGGCATAATGTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTCTTTTAATATAACCTTTTGATAAAATTAAGGCATAATGTCAA  350

seq1  ATACTTTCACCTCATGAAAATAAAACACAAATAACCTAATAAATGGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCACCTCATGAAAATAAAACACAAATAACCTAATAAATGGTATA  400

seq1  GAATCCTTACTAATATTAGGTAATTTAAAATCATTTTCACTTATGTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTTACTAATATTAGGTAATTTAAAATCATTTTCACTTATGTGCAT  450

seq1  GAATTTGAGTGTCTATTTGATTGTGTGCCAAGGGGTGTAGCACCAACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGAGTGTCTATTTGATTGTGTGCCAAGGGGTGTAGCACCAACAGG  500

seq1  GAACCACACATGGTATCAGAAACCATTGAATTGGAGAGACAGGCAGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACACATGGTATCAGAAACCATTGAATTGGAGAGACAGGCAGTTGT  550

seq1  GAACCAACTGACATGGGTGTGAAGAACAGAGTTTGGGCCCTCCAGGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAACTGACATGGGTGTGAAGAACAGAGTTTGGGCCCTCCAGGAGAG  600

seq1  CAGTAAGCTTTGCTATTTGCTGAGGAATCTTTCCATCCCAAAGTAGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGCTTTGCTATTTGCTGAGGAATCTTTCCATCCCAAAGTAGTGTT  650

seq1  TTTATTGCTATAAAGATTTTCTCTTTTCAAGCAAAAATCCCCCCCAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGCTATAAAGATTTTCTCTTTTCAAGCAAAAATCCCCCCCAAAAA  700

seq1  AACCAAGCAAAACCTATTGGACATGAAGTGCTTTGTCAGTGAAAAGCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGCAAAACCTATTGGACATGAAGTGCTTTGTCAGTGAAAAGCAGG  750

seq1  AACCTTTAACTGTAGTATAAATTGATAAGCCATTATTGCATAAAATACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTAACTGTAGTATAAATTGATAAGCCATTATTGCATAAAATACAA  800

seq1  TTTGTAGAAAAGGTGTTGAATGACCATTTTTTTTAATATGTGAAACTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGAAAAGGTGTTGAATGACCATTTTTTTTAATATGTGAAACTTTG  850

seq1  CCTTGTGTAATGTTATGATCCTCATATTAACTTATCATTCCCATCTTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTAATGTTATGATCCTCATATTAACTTATCATTCCCATCTTCCA  900

seq1  AGAAACATTCAGACATAGAAGCCTATCAGTTGGTGCAGTTTTACTATTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATTCAGACATAGAAGCCTATCAGTTGGTGCAGTTTTACTATTCT  950

seq1  CTTATCAACATCATACA-TTTTTACAAAATAAATATAAACCAGGAGTGTT  999
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTATCAACATCATACATTTTTTACAAAATAAATATAAACCAGGAGTGTT  1000

seq1  GGTTAGTGGGAACTGGAAT-GGGAGGCATAGC-TGTATACTAC-AGCTGG  1046
       |||||| ||||||||||| |||||||||||| |||||||||| ||||||
seq2  -GTTAGT-GGAACTGGAATGGGGAGGCATAGCTTGTATACTACAAGCTGG  1048

seq1  AAGCAGCC--TGTGGAGTGTTTTCTTAGATACTCACTAGCTG-ACACAAG  1093
       |||||||   |||||||| |||||||||||||||||||||| |||||  
seq2  -AGCAGCCCTGGTGGAGTG-TTTCTTAGATACTCACTAGCTGAACACAGA  1096

seq1  AAGTCTT-GAGATTGCTACAGGAAAAGATAT  1123
      | ||||| |||||||||||| | ||||||||
seq2  AGGTCTTGGAGATTGCTACA-GCAAAGATAT  1126

seq1: chr18_17655320_17656475
seq2: B6Ng01-286D09.g_67_1210 (reverse)

seq1  GCATGAGCATATAAGCACATATGCACAAACATATACTAAGTAAAAAATAA  50
      ||||||||||  | |||||||||||| ||||| | || |||||||    |
seq2  GCATGAGCATTAAGGCACATATGCAC-AACAT-TTCT-AGTAAAA---TA  44

seq1  ATTACATTGAACCGAGGGGGAATATTGTACTACAGAACCTGAGACATTTC  100
      | |||||   |||||||||||   ||||||||||  ||  |||||| |||
seq2  ACTACAT--GACCGAGGGGGATATTTGTACTACAAGACTGGAGACA-TTC  91

seq1  AGTAGTTCAGGAGAT-AAGAGCCAGTCTGCTTCAATCCAGGGTATCAAGG  149
      ||||| ||| ||||| |||||||||||||||   ||||||||||||||||
seq2  AGTAG-TCA-GAGATAAAGAGCCAGTCTGCT--CATCCAGGGTATCAAGG  137

seq1  CAGATGTCAGAAGTCAAAATATAATATTTTTAGGTGCTAGGAAAAGAATG  199
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  CAGATGTCAGAAGTCAAAATATAATA-TTTTAGGTGCTAGG-AAAGAATG  185

seq1  TCACTTGCTAATTTGGTAAATCAATCTCTGCC-TTACTGATTTGTTGTTG  248
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCACTTGCTAATTTGGTAAATCAATCTCTGCCTTTACTGATTTGTTGTTG  235

seq1  TTGTTTTCTGTGCCTCACATCTTCCTGT-AAGATCTAAAGCAGATCCTAC  297
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTGTTTTCTGTGCCTCACATCTTCCTGTAAAGATCTAAAGCAGATCCTAC  285

seq1  GAAGGCCAGAGATGGGTTCAGAAGTGTCACATGAGGCTTGTTATAGCTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCAGAGATGGGTTCAGAAGTGTCACATGAGGCTTGTTATAGCTAA  335

seq1  CACTACAAACCTCATTAAGTGTTTTTTAAATTCTCTCTTATTCCTGCTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAAACCTCATTAAGTGTTTTTTAAATTCTCTCTTATTCCTGCTTT  385

seq1  AAGGATAAAGTGATAATTGCTTTCTTACCATGGGCCATGTGTATACAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAAAGTGATAATTGCTTTCTTACCATGGGCCATGTGTATACAAAA  435

seq1  CTGAAAATAAGATATGAGAAAACAAAGAAAAAATAAAGAATTATTATGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATAAGATATGAGAAAACAAAGAAAAAATAAAGAATTATTATGCT  485

seq1  TAGTAATTTAGATTTGCAATGGCTTCAATGTTTCTGTGAAGAATACAGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATTTAGATTTGCAATGGCTTCAATGTTTCTGTGAAGAATACAGAA  535

seq1  GTAAAATCTTTATTGTCCTAAATAATTCTTAAATCTCTGAGCTTCAAGTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATCTTTATTGTCCTAAATAATTCTTAAATCTCTGAGCTTCAAGTA  585

seq1  CATTTTTGTCAGGTTTAGAGCAATACATTCTCTTCATATTTGAAAATTAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGTCAGGTTTAGAGCAATACATTCTCTTCATATTTGAAAATTAG  635

seq1  GTCATACTAAATTTTACAGCATTTCTCAATATAGTGTGGAAGATAGTCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATACTAAATTTTACAGCATTTCTCAATATAGTGTGGAAGATAGTCTG  685

seq1  AAAGTTTGGAAAAACTTTTCTATTAGATGACAAAAGTAATTGTGAAAAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGGAAAAACTTTTCTATTAGATGACAAAAGTAATTGTGAAAAGG  735

seq1  ATAGGCATTAAAACTGAAAAAGTAAACATGGGAAGTACAACAAATACAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCATTAAAACTGAAAAAGTAAACATGGGAAGTACAACAAATACAGC  785

seq1  AATTTTCATTAAAACAATATTACAAAAAATCACAAATAAAAAGTTTTTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCATTAAAACAATATTACAAAAAATCACAAATAAAAAGTTTTTTT  835

seq1  TAGTTTTCTTTTATAAAATTTAAATGTGTAACATTAGATAAATGAGTTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCTTTTATAAAATTTAAATGTGTAACATTAGATAAATGAGTTTG  885

seq1  AAAAATTGTCATAATCTTTGCTGCCATTTGAAACTTTTCTTATCTCAGGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGTCATAATCTTTGCTGCCATTTGAAACTTTTCTTATCTCAGGC  935

seq1  ACTCAGCGTGGATCTGTTAGGTGATCACAGATTGATGGGCTTATTAAGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCGTGGATCTGTTAGGTGATCACAGATTGATGGGCTTATTAAGTT  985

seq1  CTTTAAGTTTTAGTTACATCAATCATCAATGTGGGTGTGTATGACCATTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGTTTTAGTTACATCAATCATCAATGTGGGTGTGTATGACCATTA  1035

seq1  TTATTCAGGGATAAGGCTTATAATTACCTTGGGAACTATTGTCAATTGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGGGATAAGGCTTATAATTACCTTGGGAACTATTGTCAATTGAG  1085

seq1  TGTAATTTGCCTTAATAATCAGAGACCAGTTAGCTGACCATGCAAATGTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTGCCTTAATAATCAGAGACCAGTTAGCTGACCATGCAAATGTG  1135

seq1  ACTGAATTC  1156
      |||||||||
seq2  ACTGAATTC  1144