BAC Information

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BAC

Clone NameB6Ng01-286H11
Chromosome18 (Build37)
Map Location 43,941,366 - 44,083,502
singlet/doubletdoublet
Overlap geneGm94
Upstream genePpp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2
Downstream geneSpink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286H11.bB6Ng01-286H11.g
ACCGA084655GA084656
length1,1751,143
definitionB6Ng01-286H11.b B6Ng01-286H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,082,323 - 44,083,502)(43,941,366 - 43,942,505)
sequence
gaattccttctttgcccttttgcactgataaaagtagggagagtcttaaa
agttttatttaatatttgttgatctttgtgataatagccattctatatga
agagaaatgatttgtggtcatgatcatggttttaatttctctcttgatta
ctcatgttgggcattatgtcagatatttcttgcacatttgcatattactg
ttcaagaatgattattcaggcattcaacttcgttagattttgcaaatgag
gtgatcatcccaatcttagaattttgttctttatactaataaaataaaat
aagcataatttcagtattttacattaaacaaaataatatcttaggtatgg
tactacaatttcttatattattaatattatatattaataatgatacagct
tttatgctggagcacctcaactctttagtcccaacctccatcactttgac
ctatcctaggaagtggctataactgaaatgcaaatttccaggtcaatatc
ttagaactcctgaattctaatgtttactcttccaataaatcctgtctctg
aaaaaaaaaatccaatgagtctctccactgcaacccaacctgcagaacga
atctacttctgccttgctaactcatatggctttggctttttccttagttc
cttgattctatttagatactactctcaagccacttttcatgtaatagcat
gagatgactaatctgaaaaatatacactagagcaattaggtcatattttt
acagccttttaattacttattttccattaaacctcacatgtggaattaga
ttcaaactctaggtgtgtctcactggtgctcataagtcctcccaatatca
aattgtgctatttttttcaaagcctcatttattattgtctagaacaatcg
gtgctgttctaatatgtggaactctttctacctcacctcatatgccaggt
gctccatctgcccataaaacatggttttgtgaatgcctggttcaatctca
ttatacgtagttcaacataaaagttagattttagggattctgttttgtaa
caaatctaattcagactcttattatttgtttccagaacattcaatttttt
agtgcattattaatcttcctacctctgtaaggaatcctgtatatggattc
cttaatgaaaatgcctattctttag
gaattccaagttgtaaaacaaaacaaaaacaaagaaataaacaaaccaac
aaaaaacctggattttataattctaagagtctataaattctttctggagc
ttgattctacactgggttttaggaagtgattaggtttgatgaataattaa
agaattacggatttcagactaaacactgttggcagaggaagaaaaagctc
acacaaaggctttgaggtttcatacaaatatcatgtgtggttccagccta
ggtgtctagtgggagagaacggtagatataacagaaagtaccagttcagc
aaggatggaccttcattatcaggcctaagcatgtgctcttcttgaaggaa
gctaaggtttatgaaagaatttcaggaatgataatgagtgagcaaatttg
tgggatttttttctttataataacatgagcagatttgaacacacacacac
aaacacactcatacacacatatatgtggaatacttggaattcatatatgt
gtgtgtgcgttcatctgtttgcatttgaatgtatgtggttttagaacaat
agggaagtcagttcccattgcttcaataaaccttaaaagcaaatggagag
agaaaccacatttgttcagtttcttcagaggatatctatatgtagtacat
actatgtacctgacaccctatttaggcatctgatatattgggataaataa
agcatattttcacattgagaattccccaacagttcttctatcccctttga
gtcaaacctcactaggtccttcaagacctatcatatagttcgcattggcc
acaaacattttgctataggtattagtcccatcgcatactctggaagttga
ctttaatattcacatgggaatttatcttgctagtcatttgtagttgtccc
tgcatgagctcatgttgtctaaccttaaagactgaagatttgttgagaag
ccatttctgctctgtacctgggtctacaaatttcaagtcaatttttcacc
ataatcgaaccctagcagtgcattttgggaagcttcgtcttcgttgaagc
caccttcagcagcaccaatggtctcctttgtaatggacctgcaatgtttc
cattcctgaactctaccctcctcttgaattattctctatggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44082323_44083502
seq2: B6Ng01-286H11.b_45_1219 (reverse)

seq1  CTAAAGAATTAAGCATATTCATTAAAAGGAACTCA-ATACAGGAATTGCT  49
      |||||||| || |||| ||||||  ||||||  || ||||||| ||| ||
seq2  CTAAAGAA-TAGGCATTTTCATT--AAGGAATCCATATACAGG-ATTCCT  46

seq1  CTACAGAGGTAGGAAGATAAATAATGCACTAAAAAA-TGAATGGTCTGGG  98
       ||||||||||||||||| ||||||||||||||||| |||||| ||| ||
seq2  -TACAGAGGTAGGAAGATTAATAATGCACTAAAAAATTGAATGTTCT-GG  94

seq1  AAACAAATAAT-AGAGTCTGATTTAGATTTGTTAC-AAACAGAATTCCCT  146
      ||||||||||| ||||||||| ||||||||||||| |||||||| |||||
seq2  AAACAAATAATAAGAGTCTGAATTAGATTTGTTACAAAACAGAA-TCCCT  143

seq1  AAAAATCTAACTTTTATGTTGAACTACGTATAATGAGATTGAACCAGGCA  196
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAATCTAACTTTTATGTTGAACTACGTATAATGAGATTGAACCAGGCA  192

seq1  TTCACAAAACCATGTTTTATGGGCAGATGGAGCACCTGGCATATGAGGGT  246
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCACAAAACCATGTTTTATGGGCAGATGGAGCACCTGGCATATGA-GGT  241

seq1  GAGGTAGAAAGAGTTCCACATATTAGAACAGCACCGATTGTTCTAGACAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGAAAGAGTTCCACATATTAGAACAGCACCGATTGTTCTAGACAA  291

seq1  TAATAAATGAGGCTTTGAAAAAAATAGCACAATTTGATATTGGGAGGACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGAGGCTTTGAAAAAAATAGCACAATTTGATATTGGGAGGACT  341

seq1  TATGAGCACCAGTGAGACACACCTAGAGTTTGAATCTAATTCCACATGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCACCAGTGAGACACACCTAGAGTTTGAATCTAATTCCACATGTG  391

seq1  AGGTTTAATGGAAAATAAGTAATTAAAAGGCTGTAAAAATATGACCTAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAATGGAAAATAAGTAATTAAAAGGCTGTAAAAATATGACCTAAT  441

seq1  TGCTCTAGTGTATATTTTTCAGATTAGTCATCTCATGCTATTACATGAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAGTGTATATTTTTCAGATTAGTCATCTCATGCTATTACATGAAA  491

seq1  AGTGGCTTGAGAGTAGTATCTAAATAGAATCAAGGAACTAAGGAAAAAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTGAGAGTAGTATCTAAATAGAATCAAGGAACTAAGGAAAAAGC  541

seq1  CAAAGCCATATGAGTTAGCAAGGCAGAAGTAGATTCGTTCTGCAGGTTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCATATGAGTTAGCAAGGCAGAAGTAGATTCGTTCTGCAGGTTGG  591

seq1  GTTGCAGTGGAGAGACTCATTGGATTTTTTTTTTCAGAGACAGGATTTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGTGGAGAGACTCATTGGATTTTTTTTTTCAGAGACAGGATTTAT  641

seq1  TGGAAGAGTAAACATTAGAATTCAGGAGTTCTAAGATATTGACCTGGAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGTAAACATTAGAATTCAGGAGTTCTAAGATATTGACCTGGAAA  691

seq1  TTTGCATTTCAGTTATAGCCACTTCCTAGGATAGGTCAAAGTGATGGAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTCAGTTATAGCCACTTCCTAGGATAGGTCAAAGTGATGGAGG  741

seq1  TTGGGACTAAAGAGTTGAGGTGCTCCAGCATAAAAGCTGTATCATTATTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACTAAAGAGTTGAGGTGCTCCAGCATAAAAGCTGTATCATTATTA  791

seq1  ATATATAATATTAATAATATAAGAAATTGTAGTACCATACCTAAGATATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATATTAATAATATAAGAAATTGTAGTACCATACCTAAGATATT  841

seq1  ATTTTGTTTAATGTAAAATACTGAAATTATGCTTATTTTATTTTATTAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTAATGTAAAATACTGAAATTATGCTTATTTTATTTTATTAGT  891

seq1  ATAAAGAACAAAATTCTAAGATTGGGATGATCACCTCATTTGCAAAATCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAACAAAATTCTAAGATTGGGATGATCACCTCATTTGCAAAATCT  941

seq1  AACGAAGTTGAATGCCTGAATAATCATTCTTGAACAGTAATATGCAAATG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAGTTGAATGCCTGAATAATCATTCTTGAACAGTAATATGCAAATG  991

seq1  TGCAAGAAATATCTGACATAATGCCCAACATGAGTAATCAAGAGAGAAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAAATATCTGACATAATGCCCAACATGAGTAATCAAGAGAGAAAT  1041

seq1  TAAAACCATGATCATGACCACAAATCATTTCTCTTCATATAGAATGGCTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATGATCATGACCACAAATCATTTCTCTTCATATAGAATGGCTA  1091

seq1  TTATCACAAAGATCAACAAATATTAAATAAAACTTTTAAGACTCTCCCTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACAAAGATCAACAAATATTAAATAAAACTTTTAAGACTCTCCCTA  1141

seq1  CTTTTATCAGTGCAAAAGGGCAAAGAAGGAATTC  1180
      ||||||||||||||||||||||||||||||||||
seq2  CTTTTATCAGTGCAAAAGGGCAAAGAAGGAATTC  1175

seq1: chr18_43941366_43942505
seq2: B6Ng01-286H11.g_66_1208

seq1  GAATTCCAAGTTGTAAAACAAAACAAAAACAAAGAAATAAACAAACCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTTGTAAAACAAAACAAAAACAAAGAAATAAACAAACCAAC  50

seq1  AAAAAACCTGGATTTTATAATTCTAAGAGTCTATAAATTCTTTCTGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCTGGATTTTATAATTCTAAGAGTCTATAAATTCTTTCTGGAGC  100

seq1  TTGATTCTACACTGGGTTTTAGGAAGTGATTAGGTTTGATGAATAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCTACACTGGGTTTTAGGAAGTGATTAGGTTTGATGAATAATTAA  150

seq1  AGAATTACGGATTTCAGACTAAACACTGTTGGCAGAGGAAGAAAAAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTACGGATTTCAGACTAAACACTGTTGGCAGAGGAAGAAAAAGCTC  200

seq1  ACACAAAGGCTTTGAGGTTTCATACAAATATCATGTGTGGTTCCAGCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGGCTTTGAGGTTTCATACAAATATCATGTGTGGTTCCAGCCTA  250

seq1  GGTGTCTAGTGGGAGAGAACGGTAGATATAACAGAAAGTACCAGTTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTAGTGGGAGAGAACGGTAGATATAACAGAAAGTACCAGTTCAGC  300

seq1  AAGGATGGACCTTCATTATCAGGCCTAAGCATGTGCTCTTCTTGAAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGGACCTTCATTATCAGGCCTAAGCATGTGCTCTTCTTGAAGGAA  350

seq1  GCTAAGGTTTATGAAAGAATTTCAGGAATGATAATGAGTGAGCAAATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGTTTATGAAAGAATTTCAGGAATGATAATGAGTGAGCAAATTTG  400

seq1  TGGGATTTTTTTCTTTATAATAACATGAGCAGATTTGAACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTTTTTCTTTATAATAACATGAGCAGATTTGAACACACACACAC  450

seq1  AAACACACTCATACACACATATATGTGGAATACTTGGAATTCATATATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACTCATACACACATATATGTGGAATACTTGGAATTCATATATGT  500

seq1  GTGTGTGCGTTCATCTGTTTGCATTTGAATGTATGTGGTTTTAGAACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCGTTCATCTGTTTGCATTTGAATGTATGTGGTTTTAGAACAAT  550

seq1  AGGGAAGTCAGTTCCCATTGCTTCAATAAACCTTAAAAGCAAATGGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTCAGTTCCCATTGCTTCAATAAACCTTAAAAGCAAATGGAGAG  600

seq1  AGAAACCACATTTGTTCAGTTTCTTCAGAGGATATCTATATGTAGTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCACATTTGTTCAGTTTCTTCAGAGGATATCTATATGTAGTACAT  650

seq1  ACTATGTACCTGACACCCTATTTAGGCATCTGATATATTGGGATAAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTACCTGACACCCTATTTAGGCATCTGATATATTGGGATAAATAA  700

seq1  AGCATATTTTCACATTGAGAATTCCCCAACAGTTCTTCTATCCCCTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATTTTCACATTGAGAATTCCCCAACAGTTCTTCTATCCCCTTTGA  750

seq1  GTCAAACCTCACTAGGTCCTTCAAGACCTATCATATAGTTCGCATTGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACCTCACTAGGTCCTTCAAGACCTATCATATAGTTCGCATTGGCC  800

seq1  ACAAACATTTTGCTATAGGTATTAGTCCCATCGCATACTCTGGAAGTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATTTTGCTATAGGTATTAGTCCCATCGCATACTCTGGAAGTTGA  850

seq1  CTTTAATATTCACAT-GGAATTTATCTTGCTAGTCATTTGTAGTTGTCCC  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTTAATATTCACATGGGAATTTATCTTGCTAGTCATTTGTAGTTGTCCC  900

seq1  TGCATGAGCTCATGTTGTCTAACCTTAAAGACTGAAGATTTGTTGAGAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAGCTCATGTTGTCTAACCTTAAAGACTGAAGATTTGTTGAGAAG  950

seq1  CCATTTCTGCTCTGTACCTGGGTCTTAACAAATTTCAAGTCAATTTTTCA  999
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  CCATTTCTGCTCTGTACCTGGGTCT--ACAAATTTCAAGTCAATTTTTCA  998

seq1  -CATAATCGAACCCTAGCAGTGCATTTTGGGAAGCTTCGTC-TCG-TGAA  1046
       |||||||||||||||||||||||||||||||||||||||| ||| ||||
seq2  CCATAATCGAACCCTAGCAGTGCATTTTGGGAAGCTTCGTCTTCGTTGAA  1048

seq1  G-CACC-TCAGCAGCACCCATGGTCTTCCTTTGTAAATGGACTTTGCAAT  1094
      | |||| ||||||||||| |||||| |||||||| |||||||  ||||||
seq2  GCCACCTTCAGCAGCACCAATGGTC-TCCTTTGT-AATGGAC-CTGCAAT  1095

seq1  GTTTCACATCCTG-ACTCTACCCTCCTCTTGATTTATTCTC-ATGGAC  1140
      |||||   ||||| |||||||||||||||||| |||||||| ||||||
seq2  GTTTCCATTCCTGAACTCTACCCTCCTCTTGAATTATTCTCTATGGAC  1143