BAC Information

Click to search

BAC

Clone NameB6Ng01-287G08
Chromosome18 (Build37)
Map Location 75,722,589 - 75,812,882
singlet/doubletdoublet
Overlap geneGm672
Upstream geneMyo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181, Dym, LOC628356, EG667777, Smad7
Downstream geneZbtb7c, 4833419G08Rik, LOC668184, Smad2, LOC668188
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287G08.bB6Ng01-287G08.g
ACCGA085333GA085334
length1,170878
definitionB6Ng01-287G08.b B6Ng01-287G08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,811,722 - 75,812,882)(75,722,589 - 75,723,468)
sequence
gaattctcagtggccaagagcggctgacactgtgtgccaatggaagctgg
aagctctcagctcggaaggagttctggaggaggtttcttgggtcagctgc
catgggcagaagtgtacgggaacccatgaatgatgagcagggagtctagc
acaggagtcccctggaagactgaagaaaaggcccagtttacagtacattt
gaaaggactccggtgaagccatgcaaagttacctggctgttggcaaccct
ttttggtattagtattttcttaacatgttgccagaagtatattattagcc
actcaggcagaagttaaaatatagttatagtctagatttatttccatgtt
ctgcaactgtagaaggtcaaaaagaaagacatttgtcctctcgactaggt
agcaaaagagtgtacagttgatgtgatcagcggaggtgagggaaccaaag
gtgggcttcagcctctggtgtccccaggcctagtacagctaacagcatac
tcagttcattttctgaatatctgatatttagttaagcactgtatagcaga
tgcctctagaaacaccatttcctaccagtcatttgatatggcccagaagt
agtacatatgtgctgtgtcgaaggctccctgccgtcttccaaccagatac
acccgtcttcccttcctgaactgtgtgctgggcagtgtatttggaccaga
gaacccaggcaggcttcaggagtcaccttgtattgctacacacacacaca
cacacacacacacacacacacactacacatatacagacatgcatccacac
acacattcacacatatgtacacactcacaccagcacgcacaccacatata
tgcgcatgtgcatttcgcacatacagggcatcaggctcagtttgaagttt
ttattttgaacaagaaaggcccttatttttcttgcctggccctataactt
ccatagctgaattgcttacccgagacaccacagttggagactacatccca
cattgccacccttgggactgtcagctgaacttagctgtagtgaacagagg
ctacagttgttgtccgtcttgtggaagtgaatagtatgcagccagttagc
tagcaaaagtcaggcccagaaaaattgtgaaatgaggcctcttatatcct
ggtactgttcctttaccctg
gaattccccagcttttatagaataaagcctttcagctacattgttacctg
ctctctcctgaaaataatctaccatatgggtgctctatagcaggacactc
ccccccccccccaagtgataaacaggccgtgttatatttctgactggttc
ctcgtctagcacatacttcagctgtgtgtgtctgctaccctgagctgcag
tctgactctggtggccaagacgttccctccatgtaaacacgggcagctgc
cgccggtgcttccacgtaaatcttgcatgggtcttgccatgtggatgctc
ttttctctacccagccctccaggccccctcacaggacatacgttctgtcc
ctttaatcaactttattgcttctctttggacgccggcccggtccacatcc
tttgtgaggtgcattggcctacgcagagcatcccctacagcttcctggcc
ctccccatgccatgcacactccctcccgggtcacaccgtttttccggagg
cctgtcccgtctaggcgactcctgtggagcgtggtgacctggctcaaaag
tggacatgtgggctgtcctggatgccagtgcttggcccagagacgccttc
tcatcagtgagctcggagagtcttggcatctctgaggcgcacactgggga
ggaaggatggcaagcctcttctgctctctctgacaccttcctggcccctt
gtgaacaacagttctcctttgagggctgttccccatttctttccttgact
cagaacccagaacccaagaacggttctatgtaacagcagagaggagtcac
agagcaggcaaccaactgtgctccggcagggcaggggtagggcgggggcg
ggggcgggggcaggggcagggtaggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_75811722_75812882
seq2: B6Ng01-287G08.b_45_1214 (reverse)

seq1  CAGGGGGAAAGGAACAGTA-CAGAATATAAGAGGGCTCCTTTCACAA-TT  48
      || ||| |||||||||||| ||| |||||||||| ||| |||||||| ||
seq2  CA-GGGTAAAGGAACAGTACCAGGATATAAGAGGCCTCATTTCACAATTT  49

seq1  TTCT-GGCCTGAC-TCTGCTAGCTACCT-GCTGCATAACTA-TCAC-TCC  93
      |||| |||||||| | ||||||||| || ||||||| |||| |||| |||
seq2  TTCTGGGCCTGACTTTTGCTAGCTAACTGGCTGCAT-ACTATTCACTTCC  98

seq1  AC-AGACGGCCA--CACTGTAGCCTCTGTCCACTACAGCT-AGGTCAGCT  139
      || |||||| ||   |||||||||||||| |||||||||| || ||||||
seq2  ACAAGACGGACAACAACTGTAGCCTCTGTTCACTACAGCTAAGTTCAGCT  148

seq1  GACAGTTCCCAAGGGTGGCAATGTGGGATGTAGTCTCCAACTGTGGTGTC  189
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAG-TCCCAAGGGTGGCAATGTGGGATGTAGTCTCCAACTGTGGTGTC  197

seq1  TCGGGTAAGCAATTCAGCTATGGAAGTTATAGGGCCCAGGCAAG-AAAAT  238
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  TCGGGTAAGCAATTCAGCTATGGAAGTTATAGGG-CCAGGCAAGAAAAAT  246

seq1  AAGGGCCTTTCTTGTTCAAAATAAAAACTTCAAACTGAGCCTGATGCCCT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCTTTCTTGTTCAAAATAAAAACTTCAAACTGAGCCTGATGCCCT  296

seq1  GTATGTGCG-AATGCACATGCGCATATATGTGGTGTGCGTGCTGGTGTGA  337
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGCGAAATGCACATGCGCATATATGTGGTGTGCGTGCTGGTGTGA  346

seq1  GTGTGTACATATGTGTGAATGTGTGTGTGGATGCATGTCTGTATATGTGT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACATATGTGTGAATGTGTGTGTGGATGCATGTCTGTATATGTGT  396

seq1  AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCAATACAAGGT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCAATACAAGGT  446

seq1  GACTCCTGAAGCCTGCCTGGGTTCTCTGGTCCAAATACACTGCCCAGCAC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTGAAGCCTGCCTGGGTTCTCTGGTCCAAATACACTGCCCAGCAC  496

seq1  ACAGTTCAGGAAGGGAAGACGGGTGTATCTGGTTGGAAGACGGCAGGGAG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCAGGAAGGGAAGACGGGTGTATCTGGTTGGAAGACGGCAGGGAG  546

seq1  CCTTCGACACAGCACATATGTACTACTTCTGGGCCATATCAAATGACTGG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGACACAGCACATATGTACTACTTCTGGGCCATATCAAATGACTGG  596

seq1  TAGGAAATGGTGTTTCTAGAGGCATCTGCTATACAGTGCTTAACTAAATA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATGGTGTTTCTAGAGGCATCTGCTATACAGTGCTTAACTAAATA  646

seq1  TCAGATATTCAGAAAATGAACTGAGTATGCTGTTAGCTGTACTAGGCCTG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATATTCAGAAAATGAACTGAGTATGCTGTTAGCTGTACTAGGCCTG  696

seq1  GGGACACCAGAGGCTGAAGCCCACCTTTGGTTCCCTCACCTCCGCTGATC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACCAGAGGCTGAAGCCCACCTTTGGTTCCCTCACCTCCGCTGATC  746

seq1  ACATCAACTGTACACTCTTTTGCTACCTAGTCGAGAGGACAAATGTCTTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAACTGTACACTCTTTTGCTACCTAGTCGAGAGGACAAATGTCTTT  796

seq1  CTTTTTGACCTTCTACAGTTGCAGAACATGGAAATAAATCTAGACTATAA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGACCTTCTACAGTTGCAGAACATGGAAATAAATCTAGACTATAA  846

seq1  CTATATTTTAACTTCTGCCTGAGTGGCTAATAATATACTTCTGGCAACAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTTTAACTTCTGCCTGAGTGGCTAATAATATACTTCTGGCAACAT  896

seq1  GTTAAGAAAATACTAATACCAAAAAGGGTTGCCAACAGCCAGGTAACTTT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAAAATACTAATACCAAAAAGGGTTGCCAACAGCCAGGTAACTTT  946

seq1  GCATGGCTTCACCGGAGTCCTTTCAAATGTACTGTAAACTGGGCCTTTTC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCTTCACCGGAGTCCTTTCAAATGTACTGTAAACTGGGCCTTTTC  996

seq1  TTCAGTCTTCCAGGGGACTCCTGTGCTAGACTCCCTGCTCATCATTCATG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTTCCAGGGGACTCCTGTGCTAGACTCCCTGCTCATCATTCATG  1046

seq1  GGTTCCCGTACACTTCTGCCCATGGCAGCTGACCCAAGAAACCTCCTCCA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCGTACACTTCTGCCCATGGCAGCTGACCCAAGAAACCTCCTCCA  1096

seq1  GAACTCCTTCCGAGCTGAGAGCTTCCAGCTTCCATTGGCACACAGTGTCA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCTTCCGAGCTGAGAGCTTCCAGCTTCCATTGGCACACAGTGTCA  1146

seq1  GCCGCTCTTGGCCACTGAGAATTC  1161
      ||||||||||||||||||||||||
seq2  GCCGCTCTTGGCCACTGAGAATTC  1170

seq1: chr18_75722589_75723468
seq2: B6Ng01-287G08.g_67_944

seq1  GAATTCCCCAGCTTTTATAGAATAAAGCCTTTCAGCTACATTGTTACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGCTTTTATAGAATAAAGCCTTTCAGCTACATTGTTACCTG  50

seq1  CTCTCTCCTGAAAATAATCTACCATATGGGTGCTCTATAGCAGGACACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCTGAAAATAATCTACCATATGGGTGCTCTATAGCAGGACACTC  100

seq1  CCCCCCCCCCCCAAGTGATAAACAGGCCGTGTTATATTTCTGACTGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCAAGTGATAAACAGGCCGTGTTATATTTCTGACTGGTTC  150

seq1  CTCGTCTAGCACATACTTCAGCTGTGTGTGTCTGCTACCCTGAGCTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCTAGCACATACTTCAGCTGTGTGTGTCTGCTACCCTGAGCTGCAG  200

seq1  TCTGACTCTGGTGGCCAAGACGTTCCCTCCATGTAAACACGGGCAGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCTGGTGGCCAAGACGTTCCCTCCATGTAAACACGGGCAGCTGC  250

seq1  CGCCGGTGCTTCCACGTAAATCTTTCATGGGTCTTGCCATGTGGATGCTC  300
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CGCCGGTGCTTCCACGTAAATCTTGCATGGGTCTTGCCATGTGGATGCTC  300

seq1  TTTTCTCTACCCAGCCCTCCAGGCCCCCTCACAGGACATACGTTCTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTACCCAGCCCTCCAGGCCCCCTCACAGGACATACGTTCTGTCC  350

seq1  CTTTAATCAACTTTATTGCTTCTCTTTGGACGCCGGCCCGGTCCACATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCAACTTTATTGCTTCTCTTTGGACGCCGGCCCGGTCCACATCC  400

seq1  TTTGTGAGGTGCATTGGCCTACGCAGAGCATCCCCTACAGCTTCCTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAGGTGCATTGGCCTACGCAGAGCATCCCCTACAGCTTCCTGGCC  450

seq1  CTCCCCATGCCATGCACACTCCCTCCCGGGTCACACCGTTTTTCCGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATGCCATGCACACTCCCTCCCGGGTCACACCGTTTTTCCGGAGG  500

seq1  CCTGTCCCGTCTAGGCGACTCCTGTGGAGCGTGGTGACCTGGCTCAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCCGTCTAGGCGACTCCTGTGGAGCGTGGTGACCTGGCTCAAAAG  550

seq1  TGGACATGTGGGCTGTCCTGGATGCCAGTGCTTGGCCCAGAGACGCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATGTGGGCTGTCCTGGATGCCAGTGCTTGGCCCAGAGACGCCTTC  600

seq1  TCATCAGTGAGCTCGGAGAGTCTTGGCATCTCTGAGGCGCACACTGGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGTGAGCTCGGAGAGTCTTGGCATCTCTGAGGCGCACACTGGGGA  650

seq1  GGAAGGATGGCAAGCCTCTTCTGCTCTCTCTGACACCTTCCTGGCCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGATGGCAAGCCTCTTCTGCTCTCTCTGACACCTTCCTGGCCCCTT  700

seq1  GTGAACAACAGTTCTCCTTTGAGGGCTGTTCCCCATTTCTTTCCTTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACAACAGTTCTCCTTTGAGGGCTGTTCCCCATTTCTTTCCTTGACT  750

seq1  CAGAACCCAGAACCCAAGAACGGTTCTATGTAACAGCAGAGAGGAGTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCCAGAACCCAAGAACGGTTCTATGTAACAGCAGAGAGGAGTCAC  800

seq1  AGAGCAGGCAACCAACTGTGCTCCGGCAGGGCAGGGGTAGGGGCGGGGGC  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAGCAGGCAACCAACTGTGCTCCGGCAGGGCAGGGGTA-GGGCGGGGGC  849

seq1  GGGGGCGGGGGCAGGGGCAGGGGTAGGGGC  880
      ||||||||||||||||||| ||||||||||
seq2  GGGGGCGGGGGCAGGGGCA-GGGTAGGGGC  878