BAC Information

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BAC

Clone NameB6Ng01-287P20
Chromosome18 (Build37)
Map Location 53,132,033 - 53,133,113
singlet/doubletsinglet
Overlap genenone
Upstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317
Downstream geneLOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100, Csnk1g3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287P20.bB6Ng01-287P20.g
ACCGA085769GA085770
length1,0861,182
definitionB6Ng01-287P20.b B6Ng01-287P20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccgaaaacgcctaaaagtcccattgtatcattacctaatttccct
gaagacataagagccagatctatcacctgagggtcaatccaagtccagaa
aacagaaaatacctcccaccatccacctaggccaaccacactgacctcaa
gaacatgaaagagaggaggactgctgtaagcctgcagacgcttccactgg
cctgaggaacacagcccttcatttctgattcagtattcttctggctttta
ccaggatctgtggaataagaacctaatttattcaagcaaatctcaggttc
aggagccccaactcatcagacagctcaacttatatctctgaaaatacata
aatgtcttggggcatatcctattaactacatgagttaagccagcccatga
acgttagacagctcataggacttgtctattctcatcaaattggagccatg
cacgtaagctaagatgccaggcacagtacgaatactaggcaatagtcagc
tcgctgtaataaattagaaaacttaaagttatggcatgatataaataaag
gctgtcctcaaagtaataacaaccacataattgagcctaaaataaaatct
agcagatataaaagaaaactagacatgtgctctgtgcttcgatcagccct
caggtaatagttggttctttgtgttttcaggaaaatcagacaatgattgc
aatacatgatggtttgaatgaaaatggctcccagaggcccatagaaaggg
gcactattagtaggtgtggcttgttggagtaggtgtggctttgttagagg
aggtgtggccttgttgaaatgggtgtggctttgctagaagaggtgtggcc
ttgttggagtgggtgtggctttgttagagggaggtgtggccttgttggag
gaagtatgtcactttctcttcctgatgccaacaggttcaagactggtaga
attctcagctaacctctcccagtacttctgtctgtcttgagctgccatgg
attcccaccctggacaataaagggactaacctctggaggtgtagccagtc
ccaattaaatgttggccttttagagttacatgttca
gaattctttatttagctctgtaccccatttttaatctggagtctaacttc
atgagttctttgtatatattggatattaaccctctatcagatgtaggatt
ggtaaagatcttttcccaatctgttggttgctgttttgtcctattgacag
tgtccttggccttacagaagctttgcaattttatgaggtcccatttgtct
attgttgatcttagagcacaagccattgctgttctgttcaggaacccttt
ctctgtgcccatgagtttgaggctcttccccactttctcttctattagtt
tcagtgcttctggttttatgtggaggtctttgatccacttggacttgagc
tttgtacaaggaaataagaatggatcaatgtgcattcttctacatgttga
ccaccagttgagccagcaccattttttgaaaatgatgtctcttttttgtt
tgtttgtttatttgtttttttaaatcacgattgctctgtagtgcagcttg
aggtcagggatggtgattccactagaagttcttttattgtagagaatagt
tttagctatcctgggtttttttgttattccaaatgaacttgcaaactgct
ctttctaacgttatgaagaattgatttggagttttgatggggattgcatt
gaatctgtagattgctttcatcaagatgaccatttttactatattaatcc
tgctaatccatgagcctgggagatctttccatcttctgagatcttctttg
atgtctttcttcagagacttaaagttcttgtcatacagatctttcacttg
ctaggttagagtcacagaagttttcttaattagtgatctacaaaggaggg
cctaacccatccttggtggggccatccccgggcctggtggtcttgggttc
ctataagaacccaggctgagcaagctaccaggtataaggcaataaacagc
acctctccacttatgtggctccacgggtgttatcaggcttcctactgggc
atctcttctttcttagttttcctctgatggggatctcactctgtaggtct
agtcttggtctgactcatgttctcccatcttctgtctaacagctgtggat
acagggcatggtccacatgtttcatgaatgcataaaaggtgtatccactc
aacctataaattttgagccgagcattacaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_53132033_53133113
seq2: B6Ng01-287P20.b_51_1136

seq1  GAATTCCGAAAACGCCTAAAAGTCCCATTGTATCATTACCTAATTTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGAAAACGCCTAAAAGTCCCATTGTATCATTACCTAATTTCCCT  50

seq1  GAAGACATAAGAGCCAGATCTATCACCTGAGGGTCAATCCAAGTCCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATAAGAGCCAGATCTATCACCTGAGGGTCAATCCAAGTCCAGAA  100

seq1  AACAGAAAATACCTCCCACCATCCACCTAGGCCAACCACACTGACCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAATACCTCCCACCATCCACCTAGGCCAACCACACTGACCTCAA  150

seq1  GAACATGAAAGAGAGGAGGACTGCTGTAAGCCTGCAGACGCTTCCACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGAAAGAGAGGAGGACTGCTGTAAGCCTGCAGACGCTTCCACTGG  200

seq1  CCTGAGGAACACAGCCCTTCATTTCTGATTCAGTATTCTTCTGGCTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGAACACAGCCCTTCATTTCTGATTCAGTATTCTTCTGGCTTTTA  250

seq1  CCAGGATCTGTGGAATAAGAACCTAATTTATTCAAGCAAATCTCAGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATCTGTGGAATAAGAACCTAATTTATTCAAGCAAATCTCAGGTTC  300

seq1  AGGAGCCCCAACTCATCAGACAGCTCAACTTATATCTCTGAAAATACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCCCAACTCATCAGACAGCTCAACTTATATCTCTGAAAATACATA  350

seq1  AATGTCTTGGGGCATATCCTATTAACTACATGAGTTAAGCCAGCCCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTGGGGCATATCCTATTAACTACATGAGTTAAGCCAGCCCATGA  400

seq1  ACGTTAGACAGCTCATAGGACTTGTCTATTCTCATCAAATTGGAGCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTAGACAGCTCATAGGACTTGTCTATTCTCATCAAATTGGAGCCATG  450

seq1  CACGTAAGCTAAGATGCCAGGCACAGTACGAATACTAGGCAATAGTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTAAGCTAAGATGCCAGGCACAGTACGAATACTAGGCAATAGTCAGC  500

seq1  TCGCTGTAATAAATTAGAAAACTTAAAGTTATGGCATGATATAAATAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGTAATAAATTAGAAAACTTAAAGTTATGGCATGATATAAATAAAG  550

seq1  GCTGTCCTCAAAGTAATAACAACCACATAATTGAGCCTAAAATAAAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTCAAAGTAATAACAACCACATAATTGAGCCTAAAATAAAATCT  600

seq1  AGCAGATATAAAAGAAAACTAGACATGTGCTCTGTGCTTCGATCAGCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATATAAAAGAAAACTAGACATGTGCTCTGTGCTTCGATCAGCCCT  650

seq1  CAGGTAATAGTTGGTTCTTTGTGTTTTCAGGAAAATCAGACAATGATTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAATAGTTGGTTCTTTGTGTTTTCAGGAAAATCAGACAATGATTGC  700

seq1  AATACATGATGGTTTGAATGAAAATGGCTCCCAGAGGCCCATAGAAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGATGGTTTGAATGAAAATGGCTCCCAGAGGCCCATAGAAAGGG  750

seq1  GCACTATTAGTAGGTGTGGCTTTGTTGGAGTAGGTGTGGCTTTGTTAGAG  800
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCACTATTAGTAGGTGTGGC-TTGTTGGAGTAGGTGTGGCTTTGTTAGAG  799

seq1  GAGGTGTGGCCTTGTTGAAATGGGTGTGGCTTTGCTAGAAGAGGTGTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTGGCCTTGTTGAAATGGGTGTGGCTTTGCTAGAAGAGGTGTGGC  849

seq1  CTTGTTGGAGTGGGTGTGGCTTTGTTAGA-GGAGGTGTGGCCTTGTTGGA  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTTGTTGGAGTGGGTGTGGCTTTGTTAGAGGGAGGTGTGGCCTTGTTGGA  899

seq1  GGAAGTATGTCACTTTCTCTTCCTGATGCCAACAGG-TCCAGACT-GTAG  947
      |||||||||||||||||||||||||||||||||||| || ||||| ||||
seq2  GGAAGTATGTCACTTTCTCTTCCTGATGCCAACAGGTTCAAGACTGGTAG  949

seq1  AATTCTCAGCT-ACCTCT-CCAGTAC-TCTGTCTGTCTTTGAGCTGCCAT  994
      ||||||||||| |||||| ||||||| |||||||||| ||||||||||||
seq2  AATTCTCAGCTAACCTCTCCCAGTACTTCTGTCTGTC-TTGAGCTGCCAT  998

seq1  -GATTCCCACCCT-GACAATAAA-GGACTAACCCTCT-GAAGTGTAAGCC  1040
       |||||||||||| ||||||||| ||||||| ||||| || |||| ||||
seq2  GGATTCCCACCCTGGACAATAAAGGGACTAA-CCTCTGGAGGTGT-AGCC  1046

seq1  AGTCCCAATTAAATGTTGTCCTTTTAAGAGTTACATGTTCA  1081
      |||||||||||||||||| |||||| |||||||||||||||
seq2  AGTCCCAATTAAATGTTGGCCTTTT-AGAGTTACATGTTCA  1086