BAC Information

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BAC

Clone NameB6Ng01-288J13
Chromosome18 (Build37)
Map Location 58,813,151 - 58,958,943
singlet/doubletdoublet
Overlap geneIsoc1
Upstream gene1700011I03Rik, Slc12a2, 9330166H04Rik, Fbn2, Slc27a6
Downstream geneAdamts19, A730017C20Rik, 4833446K15Rik, LOC667549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288J13.bB6Ng01-288J13.g
ACCGA086219GA086220
length1,0801,104
definitionB6Ng01-288J13.b B6Ng01-288J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,957,873 - 58,958,943)(58,813,151 - 58,814,251)
sequence
gaattcactgctgtaacaaaataagaataatcgccattgtaccagagaag
gtgttgaatgaagatatgcattgtacagctgagctcttcactcagcaatt
cactccacagaaagaaaaaatgatcctgctaagctggttgcctgtgatta
tatgctttcattgttggtagatgccaacctctgccttaatctttatgaag
gtatatttgacctacttattagggacattatagacatgcagggccttgtt
agccactatggtcctttaacagcctatgtcatatttagcagaatatgatg
ggaaacagttctaatgctttgtcttaattcagttcccaaaagctgcactt
ccagtcgctgagggtccctgcctccagcttgctttgattggttgcaaaga
attgctgtacagtcaatgactaggcagagagacagaagcagggcatttag
atttcaatgtcaagggaccaaggaagagggacaagataatcactgtgact
tggaggcagagggatcatatttaagagctgcaagagagaaatcctctaac
agctctatggggagtttgggggacagctgcccagaaggttaacagaaagg
tgttaagccagagatactagaggggagagtgtgctagccatggagaggtt
tagaagtgcccaaccattgaactagtcaaggcatatcaaaatcagtgggc
atatatgtatgtgtcctttcattcatgaatccagagctcttgggtgggtg
cagcgcccaagatacccaccaggagccagagtagattaactaactcacca
ctacaagaatgtgtttgaatgctctgaagctgtgaggatttgagactggc
ttgttttagacctctgttagcagcctcactagcttttgtgttttgccaca
gaccacctctgtaagcagtgtaataagatcaatagcacagaggacaagct
caagggtaagcctcgtggctcactgagaagaagaaactggaaagaactat
ttttcgttctttttttggggttcaagaatagagtttatctaatacagaac
ctgggctgtcctggaacctcaactttgtaa

gaattctctgatagcaccaagattgttcctgtcaacttctcaggaaggga
gacatggatactgagtgctgggctaacttcaaaggttctgccaatcccct
gtcaaagagttccaatcacaaatggcatttgccgcaggtggcacgcccac
ttacacttgagcaacagtacagtgactaagaattgcacacaagtaacggc
tgaagtagcaaaaggaaggcagaataatgattgagtagaggtgtagccaa
gcttcctgaagctgggcaatttcaagatcttaagacaaattttgtagaca
ataggattttccagtttaggaaagagtttataagttggatttcatttttt
tttcttcccattccaggagtctatttattgaaaaatgaaccagactccac
actagacagaaacatcctgatgcaatacatagaaatgccaaaattcaaaa
cgtaataaattataaacactttctgtcctcaaaggatgatcgtggagaag
tgaatgtactaaaatagaaatgtgtctctgaaagcaaattctttgaaaag
aaaatatgacagctaggaatagcagagcaggtcagaattacggctgcctt
agacgcagtgacagatgagtatactacacagagacaaaagaacaggagag
atttaaaaagagtatatgggaatgtgtcacagaaagatatgaacacttaa
tcaactcctttattttctgatcttaaaccagtcacctgcttgtatcttta
tgcacataaattaattgcttttcttccactgtgataaagtagctctgaga
gattactcacttgcagacctcctctggagactagctagctcctcccccag
tgctgtacccaatgaacacaaacacggaggttctagggctgcatttatag
acaccatcttattctagcttcactgaacagtgccctgtgtgtctgtccct
tctcattcttctctgcccttagccagggtttcaggatccaaagtagcagg
agtctgcacattattgttgatcttttaactggttatgaactgtgaaaata
gaaacactgtgtacatttttattttggtgcttcctgaactctcgatgcac
acac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_58957873_58958943
seq2: B6Ng01-288J13.b_47_1126 (reverse)

seq1  TTACAAAG-TGA-GTTCCAGGACAG-CCAGG-TCTGTA-TAGATAAACTC  45
      |||||||| ||| |||||||||||| ||||| |||||| |||||||||||
seq2  TTACAAAGTTGAGGTTCCAGGACAGCCCAGGTTCTGTATTAGATAAACTC  50

seq1  TA-TCTTGAAACCCCAAAAAAGAACG-AAAATAGTTCTTTCCAGTTTCTT  93
      || ||||||| ||| ||||||||||| |||||||||||||||||||||||
seq2  TATTCTTGAACCCCAAAAAAAGAACGAAAAATAGTTCTTTCCAGTTTCTT  100

seq1  C-TCTCAGTGAGCCACGAGGCTTACCCTTGAGCTTGTCCTCTGTGCTATT  142
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGTGAGCCACGAGGCTTACCCTTGAGCTTGTCCTCTGTGCTATT  150

seq1  GATCTTATTACACTGCTTACAGAGGTGGTCTGTGGCAAAACACAAAAGCT  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTATTACACTGCTTACAGAGGTGGTCTGTGGCAAAACACAAAAGCT  200

seq1  AGTGAGGCTGCTAACAGAGGTCTAAAACAAGCCAGTCTCAAATCCTCACA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGCTGCTAACAGAGGTCTAAAACAAGCCAGTCTCAAATCCTCACA  250

seq1  GCTTCAGAGCATTCAAACACATTCTTGTAGTGGTGAGTTAGTTAATCTAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGAGCATTCAAACACATTCTTGTAGTGGTGAGTTAGTTAATCTAC  300

seq1  TCTGGCTCCTGGTGGGTATCTTGGGCGCTGCACCCACCCAAGAGCTCTGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCCTGGTGGGTATCTTGGGCGCTGCACCCACCCAAGAGCTCTGG  350

seq1  ATTCATGAATGAAAGGACACATACATATATGCCCACTGATTTTGATATGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAATGAAAGGACACATACATATATGCCCACTGATTTTGATATGC  400

seq1  CTTGACTAGTTCAATGGTTGGGCACTTCTAAACCTCTCCATGGCTAGCAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTAGTTCAATGGTTGGGCACTTCTAAACCTCTCCATGGCTAGCAC  450

seq1  ACTCTCCCCTCTAGTATCTCTGGCTTAACACCTTTCTGTTAACCTTCTGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCCCTCTAGTATCTCTGGCTTAACACCTTTCTGTTAACCTTCTGG  500

seq1  GCAGCTGTCCCCCAAACTCCCCATAGAGCTGTTAGAGGATTTCTCTCTTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGTCCCCCAAACTCCCCATAGAGCTGTTAGAGGATTTCTCTCTTG  550

seq1  CAGCTCTTAAATATGATCCCTCTGCCTCCAAGTCACAGTGATTATCTTGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTTAAATATGATCCCTCTGCCTCCAAGTCACAGTGATTATCTTGT  600

seq1  CCCTCTTCCTTGGTCCCTTGACATTGAAATCTAAATGCCCTGCTTCTGTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCCTTGGTCCCTTGACATTGAAATCTAAATGCCCTGCTTCTGTC  650

seq1  TCTCTGCCTAGTCATTGACTGTACAGCAATTCTTTGCAACCAATCAAAGC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTAGTCATTGACTGTACAGCAATTCTTTGCAACCAATCAAAGC  700

seq1  AAGCTGGAGGCAGGGACCCTCAGCGACTGGAAGTGCAGCTTTTGGGAACT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAGGCAGGGACCCTCAGCGACTGGAAGTGCAGCTTTTGGGAACT  750

seq1  GAATTAAGACAAAGCATTAGAACTGTTTCCCATCATATTCTGCTAAATAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAGACAAAGCATTAGAACTGTTTCCCATCATATTCTGCTAAATAT  800

seq1  GACATAGGCTGTTAAAGGACCATAGTGGCTAACAAGGCCCTGCATGTCTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGGCTGTTAAAGGACCATAGTGGCTAACAAGGCCCTGCATGTCTA  850

seq1  TAATGTCCCTAATAAGTAGGTCAAATATACCTTCATAAAGATTAAGGCAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCCCTAATAAGTAGGTCAAATATACCTTCATAAAGATTAAGGCAG  900

seq1  AGGTTGGCATCTACCAACAATGAAAGCATATAATCACAGGCAACCAGCTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGCATCTACCAACAATGAAAGCATATAATCACAGGCAACCAGCTT  950

seq1  AGCAGGATCATTTTTTCTTTCTGTGGAGTGAATTGCTGAGTGAAGAGCTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGATCATTTTTTCTTTCTGTGGAGTGAATTGCTGAGTGAAGAGCTC  1000

seq1  AGCTGTACAATGCATATCTTCATTCAACACCTTCTCTGGT-CAATGGCGA  1041
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCTGTACAATGCATATCTTCATTCAACACCTTCTCTGGTACAATGGCGA  1050

seq1  TTATTCTTATTTTGTTACAGCAGTGAATTC  1071
      ||||||||||||||||||||||||||||||
seq2  TTATTCTTATTTTGTTACAGCAGTGAATTC  1080


seq1: chr18_58813151_58814251
seq2: B6Ng01-288J13.g_68_1171

seq1  GAATTCTCTGATAGCACCAAGATTGTTCCTGTCAACTTCTCAGGAAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGATAGCACCAAGATTGTTCCTGTCAACTTCTCAGGAAGGGA  50

seq1  GACATGGATACTGAGTGCTGGGCTAACTTCAAAGGTTCTGCCAATCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGATACTGAGTGCTGGGCTAACTTCAAAGGTTCTGCCAATCCCCT  100

seq1  GTCAAAGAGTTCCAATCACAAATGGCATTTGCCGCAGGTGGCACGCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGAGTTCCAATCACAAATGGCATTTGCCGCAGGTGGCACGCCCAC  150

seq1  TTACACTTGAGCAACAGTACAGTGACTAAGAATTGCACACAAGTAACGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTGAGCAACAGTACAGTGACTAAGAATTGCACACAAGTAACGGC  200

seq1  TGAAGTAGCAAAAGGAAGGCAGAATAATGATTGAGTAGAGGTGTAGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAGCAAAAGGAAGGCAGAATAATGATTGAGTAGAGGTGTAGCCAA  250

seq1  GCTTCCTGAAGCTGGGCAATTTCAAGATCTTAAGACAAATTTTGTAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGAAGCTGGGCAATTTCAAGATCTTAAGACAAATTTTGTAGACA  300

seq1  ATAGGATTTTCCAGTTTAGGAAAGAGTTTATAAGTTGGATTTCATTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATTTTCCAGTTTAGGAAAGAGTTTATAAGTTGGATTTCATTTTTT  350

seq1  TTTCTTCCCATTCCAGGAGTCTATTTATTGAAAAATGAACCAGACTCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCCATTCCAGGAGTCTATTTATTGAAAAATGAACCAGACTCCAC  400

seq1  ACTAGACAGAAACATCCTGATGCAATACATAGAAATGCCAAAATTCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACAGAAACATCCTGATGCAATACATAGAAATGCCAAAATTCAAAA  450

seq1  CGTAATAAATTATAAACACTTTCTGTCCTCAAAGGATGATCGTGGAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATAAATTATAAACACTTTCTGTCCTCAAAGGATGATCGTGGAGAAG  500

seq1  TGAATGTACTAAAATAGAAATGTGTCTCTGAAAGCAAATTCTTTGAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTACTAAAATAGAAATGTGTCTCTGAAAGCAAATTCTTTGAAAAG  550

seq1  AAAATATGACAGCTAGGAATAGCAGAGCAGGTCAGAATTACGGCTGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGACAGCTAGGAATAGCAGAGCAGGTCAGAATTACGGCTGCCTT  600

seq1  AGACGCAGTGACAGATGAGTATACTACACAGAGACAAAAGAACAGGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCAGTGACAGATGAGTATACTACACAGAGACAAAAGAACAGGAGAG  650

seq1  ATTTAAAAAGAGTATATGGGAATGTGTCACAGAAAGATATGAACACTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAGAGTATATGGGAATGTGTCACAGAAAGATATGAACACTTAA  700

seq1  TCAACTCCTTTATTTTCTGATCTTAAACCAGTCACCTGCTTGTATCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCCTTTATTTTCTGATCTTAAACCAGTCACCTGCTTGTATCTTTA  750

seq1  TGCACATAAATTAATTGCTTTTCTTCCACTGTGATAAAGTAGCTCTGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATAAATTAATTGCTTTTCTTCCACTGTGATAAAGTAGCTCTGAGA  800

seq1  GATTACTCACTTGCAGACCTCCTCTGGAGACTAGCTAGCTCCTCCCCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTCACTTGCAGACCTCCTCTGGAGACTAGCTAGCTCCTCCCCCAG  850

seq1  TGCTGTACCCAATGAACACAAACACGGAGGTTCTA-GGCTGCATTTATAG  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGCTGTACCCAATGAACACAAACACGGAGGTTCTAGGGCTGCATTTATAG  900

seq1  ACACCATCTTATTCTAGCTTCACTGAACAGTG-CCTGTGTGTCTGTCCCT  948
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACACCATCTTATTCTAGCTTCACTGAACAGTGCCCTGTGTGTCTGTCCCT  950

seq1  TCTCATTCCTTCTCTGCCCTTAGCCAGGGTTTCAGGATCCAAAAGTAGCA  998
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  TCTCATT-CTTCTCTGCCCTTAGCCAGGGTTTCAGGATCC-AAAGTAGCA  998

seq1  GGAGTCTGCACA-TATTGTTTGATCTTTTAACTGGTTTAATG-ACTGTG-  1045
      |||||||||||| ||||| ||||||||||||||||||  ||| |||||| 
seq2  GGAGTCTGCACATTATTG-TTGATCTTTTAACTGGTT--ATGAACTGTGA  1045

seq1  AAATAG-AACACTGTGTACA-TTTTATTT--GTGCCTTCCTGACTTCTCG  1091
      |||||| ||||||||||||| ||||||||  ||| ||||||||  |||||
seq2  AAATAGAAACACTGTGTACATTTTTATTTTGGTG-CTTCCTGAACTCTCG  1094

seq1  ATGCACACAC  1101
      ||||||||||
seq2  ATGCACACAC  1104


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