BAC Information

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BAC

Clone NameB6Ng01-288K14
Chromosome18 (Build37)
Map Location 8,294,272 - 8,339,076
singlet/doubletdoublet
Overlap genenone
Upstream geneArmc4, Mpp7, EG622384, LOC100039562, LOC100039606, Wac, LOC665121, LOC225134, LOC665132
Downstream geneEG433158, EG545242, LOC665161, Fzd8, 9430022F06Rik, Ccny
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288K14.bB6Ng01-288K14.g
ACCGA086269GA086270
length1,0821,006
definitionB6Ng01-288K14.b B6Ng01-288K14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,294,272 - 8,295,351)(8,338,083 - 8,339,076)
sequence
gaattctctatgtagctattctagttttattttatctaatattgtgataa
acaccacagccacaaactacttctgggagtaatgggtttacttcagttta
gaagttgcagtctattatagagggaagccaggataggagttcaaggcagg
aactgaagcagagaacatgcaggatattactaattggcttgctccctctg
tctttttcagctaattttttacacagcctaggcttacctgcccaggaatg
gtcctgtccacaatgggcttggctatcctacatcacacagtaattaagac
aatacccttacagatacaccctcaggccaactgcttctgatggaggaaat
tcctctgttgagtttcccttgtcctacatgactctagtttagatcaagtt
aacaaaaactaacccgtacaatagctgatgtgacccttgaacttctgatc
ctctgaatcttctccaaagtattgggttgtatacaaaagccctgattttt
aatggcaagacattttgtataattattttttccttttataacttgtattt
ttttctaattctccatcagaatttactctaattgattgtatttgttaatt
caatgtattttaacaaccatatcagagcatgtaatatagtgcatacattt
aatttttacttaattatcacatgactagccagaaaattaaaccaaaccca
gccaaaaccaaaaatctgggattaagttattactataaataatcattggc
attcactcaaaagtatttgcagttatgggtgagtgggagtacatctctcc
aagtctcagctctaggaggtacttacagatatgagtctcaccttcccatt
aattgttctcagcaatccaaagatgtttattggtcttaccttcagcacaa
atgcttgtggggttgtcttgtacagagtacatatactttgtataaccctc
actttttcagccatgtgggcagatttcagttaaatgcattcaattcttct
tgatagtattttttccaccagatcttggtgtccaacagttagtgagttcc
tatggtgggcctcagggtaccagaatcacaag

gaattctctgcaaatctcttgtaaaactcagttcagtatctctgaaacac
tcttctttcttcttctccaccaaagtgattgacaattagagtcattgttg
cagtttgagatttaaaaatctctcccatggattcagctctttcagttcta
ggactccagtggatgccagtgttccaatgttgtgaagtcctggaactcct
gggtggtaggcccaggaagtgtgtgtctgggaagacagaccttgagcatc
cattttctgtccctctctgcttcctgatccacctagatgtggatgaatgg
cttcaagctcttgctgccacaaccatgagcttctctttgagccatacttt
tctcaccatattggattgtatccttaaacagcaaactaccatggatccct
tcttaccttaagtagcttccttcccgatatttggtctctacatcaagaaa
gtaactgacacaatcacagagaccaaagaatctcacgacagggtccatgt
gtggactgagacaaagtactggcatttctacttcccaacacaaccaattt
gccctttttagccacagtccattatattggttgcaaaagattctgtccct
tccttcacagataccaaagaggtttagttaaaaggggggggggggatgag
cacttatagattgataagttttaatgaataaggaattgcatatttaattt
atacatttaatttttttataaatgttaaacatcttctaaggagctttaca
gggtaaaaactttctaggacctgtgaaagctagcaccctgcacttctgca
cttaccctagcaagagtaacaacccccctgtctccatgggcctagtgatc
tgcttctcatccaggccccatggccctcctcagtgctcttatattcttat
tctactggccccttaagaataactggttctgtcaactttccatccagagt
tgctgggatccaaaattacctcaggaaaatgagcatggatcaaaaaaaat
ctatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_8294272_8295351
seq2: B6Ng01-288K14.b_47_1128

seq1  GAATTCTCTATGTAGCTATTCTAGTTTTATTTTATCTAATATTGTGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATGTAGCTATTCTAGTTTTATTTTATCTAATATTGTGATAA  50

seq1  ACACCACAGCCACAAACTACTTCTGGGAGTAATGGGTTTACTTCAGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACAGCCACAAACTACTTCTGGGAGTAATGGGTTTACTTCAGTTTA  100

seq1  GAAGTTGCAGTCTATTATAGAGGGAAGCCAGGATAGGAGTTCAAGGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGCAGTCTATTATAGAGGGAAGCCAGGATAGGAGTTCAAGGCAGG  150

seq1  AACTGAAGCAGAGAACATGCAGGATATTACTAATTGGCTTGCTCCCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGCAGAGAACATGCAGGATATTACTAATTGGCTTGCTCCCTCTG  200

seq1  TCTTTTTCAGCTAATTTTTTACACAGCCTAGGCTTACCTGCCCAGGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCAGCTAATTTTTTACACAGCCTAGGCTTACCTGCCCAGGAATG  250

seq1  GTCCTGTCCACAATGGGCTTGGCTATCCTACATCACACAGTAATTAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTCCACAATGGGCTTGGCTATCCTACATCACACAGTAATTAAGAC  300

seq1  AATACCCTTACAGATACACCCTCAGGCCAACTGCTTCTGATGGAGGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCTTACAGATACACCCTCAGGCCAACTGCTTCTGATGGAGGAAAT  350

seq1  TCCTCTGTTGAGTTTCCCTTGTCCTACATGACTCTAGTTTAGATCAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTTGAGTTTCCCTTGTCCTACATGACTCTAGTTTAGATCAAGTT  400

seq1  AACAAAAACTAACCCGTACAATAGCTGATGTGACCCTTGAACTTCTGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACTAACCCGTACAATAGCTGATGTGACCCTTGAACTTCTGATC  450

seq1  CTCTGAATCTTCTCCAAAGTATTGGGTTGTATACAAAAGCCCTGATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAATCTTCTCCAAAGTATTGGGTTGTATACAAAAGCCCTGATTTTT  500

seq1  AATGGCAAGACATTTTGTATAATTATTTTTTCCTTTTATAACTTGTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAAGACATTTTGTATAATTATTTTTTCCTTTTATAACTTGTATTT  550

seq1  TTTTCTAATTCTCCATCAGAATTTACTCTAATTGATTGTATTTGTTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATTCTCCATCAGAATTTACTCTAATTGATTGTATTTGTTAATT  600

seq1  CAATGTATTTTAACAACCATATCAGAGCATGTAATATAGTGCATACATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTATTTTAACAACCATATCAGAGCATGTAATATAGTGCATACATTT  650

seq1  AATTTTTACTTAATTATCACATGACTAGCCAGAAAATTAAACCAAACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTACTTAATTATCACATGACTAGCCAGAAAATTAAACCAAACCCA  700

seq1  GCCAAAACCAAAAATCTGGGATTAAGTTATTACTATAAATAATCATTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAACCAAAAATCTGGGATTAAGTTATTACTATAAATAATCATTGGC  750

seq1  ATTCACTCAAAAGTATTTGCAGTTATGGGTGAGTGGGAGTACATCTCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTCAAAAGTATTTGCAGTTATGGGTGAGTGGGAGTACATCTCTCC  800

seq1  AAGTCTCAGCTCTAGGAGGTACTTACAGATATGAGTCTCACCTTCCCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCAGCTCTAGGAGGTACTTACAGATATGAGTCTCACCTTCCCATT  850

seq1  AATTGTTCTCAGCAATCCAAAGATGTTTATTGGTCTTACCTTCAGCACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTCTCAGCAATCCAAAGATGTTTATTGGTCTTACCTTCAGCACAA  900

seq1  ATGCTTGTGGGGTTGTCTTGTACAGAGTACATATACTTTGTATAACCCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGTGGGGTTGTCTTGTACAGAGTACATATACTTTGTATAACCCTC  950

seq1  AC-TTTTCAGCCATGTGGGCAGATTTCAGTTAAATGCATTCAATTCTTCT  999
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCAGCCATGTGGGCAGATTTCAGTTAAATGCATTCAATTCTTCT  1000

seq1  TGATAGTATTTTT--CACCAGATCTTGGTGTCCAACAGTTAGTGAGTTCC  1047
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  TGATAGTATTTTTTCCACCAGATCTTGGTGTCCAACAGTTAGTGAGTTCC  1050

seq1  TATGGTGGGCCTCAGGGGTACCCAGATCACAAG  1080
      |||||||||||||| |||||||   ||||||||
seq2  TATGGTGGGCCTCA-GGGTACCAGAATCACAAG  1082


seq1: chr18_8338083_8339076
seq2: B6Ng01-288K14.g_66_1071 (reverse)

seq1  TAATAGA-TTTTTTTGATCCATGCTCATTTTCCTGAGGTAATTTTGGATC  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATTTTTTTTGATCCATGCTCATTTTCCTGAGGTAATTTTGGATC  50

seq1  CCAGC-ACTCTGGATGGAAAGTTGACAG-ACCAG-TATTCCTTAGGGGCC  96
      ||||| |||||||||||||||||||||| ||||| ||||| | |||||||
seq2  CCAGCAACTCTGGATGGAAAGTTGACAGAACCAGTTATTCTTAAGGGGCC  100

seq1  AGTAGAAT-AGGATAT-AGAGCACTGAGGAGGGCCAT-GGGCCTGGATGA  143
      |||||||| || |||| |||||||||||||||||||| ||||||||||||
seq2  AGTAGAATAAGAATATAAGAGCACTGAGGAGGGCCATGGGGCCTGGATGA  150

seq1  GAAGCAGATCACTAGGCCCATGGAGACA-GGGGGTTGTTACTCTTGCTA-  191
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  GAAGCAGATCACTAGGCCCATGGAGACAGGGGGGTTGTTACTCTTGCTAG  200

seq1  GGTAAGTGCAGAAGTGCAGGGTGCTAGCTTTCACAGGTCCTAGAA--GTT  239
      |||||||||||||||||||||||||||||||||||||||||||||   ||
seq2  GGTAAGTGCAGAAGTGCAGGGTGCTAGCTTTCACAGGTCCTAGAAAGTTT  250

seq1  TTACCCTGT-AAGCTCCTTAGAAGATG-TTAACATTTATAAAAAAATTAA  287
      ||||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  TTACCCTGTAAAGCTCCTTAGAAGATGTTTAACATTTATAAAAAAATTAA  300

seq1  ATGTATAAATTAAATATGCAATTCCTTATTCATTAAAACTTATCAATCTA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAAATTAAATATGCAATTCCTTATTCATTAAAACTTATCAATCTA  350

seq1  TAAGTGCTCATCCCCCCCCCCCCCTTTTAACTAAACCTCTTTGGTATCTG  387
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCTCAT-CCCCCCCCCCCCTTTTAACTAAACCTCTTTGGTATCTG  399

seq1  TGAAGGAAGGGACAGAATCTTTTGCAACCAATATAATGGACTGTGGCTAA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAAGGGACAGAATCTTTTGCAACCAATATAATGGACTGTGGCTAA  449

seq1  AAAGGGCAAATTGGTTGTGTTGGGAAGTAGAAATGCCAGTACTTTGTCTC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCAAATTGGTTGTGTTGGGAAGTAGAAATGCCAGTACTTTGTCTC  499

seq1  AGTCCACACATGGACCCTGTCGTGAGATTCTTTGGTCTCTGTGATTGTGT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACACATGGACCCTGTCGTGAGATTCTTTGGTCTCTGTGATTGTGT  549

seq1  CAGTTACTTTCTTGATGTAGAGACCAAATATCGGGAAGGAAGCTACTTAA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACTTTCTTGATGTAGAGACCAAATATCGGGAAGGAAGCTACTTAA  599

seq1  GGTAAGAAGGGATCCATGGTAGTTTGCTGTTTAAGGATACAATCCAATAT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAAGGGATCCATGGTAGTTTGCTGTTTAAGGATACAATCCAATAT  649

seq1  GGTGAGAAAAGTATGGCTCAAAGAGAAGCTCATGGTTGTGGCAGCAAGAG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAAAAGTATGGCTCAAAGAGAAGCTCATGGTTGTGGCAGCAAGAG  699

seq1  CTTGAAGCCATTCATCCACATCTAGGTGGATCAGGAAGCAGAGAGGGACA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGCCATTCATCCACATCTAGGTGGATCAGGAAGCAGAGAGGGACA  749

seq1  GAAAATGGATGCTCAAGGTCTGTCTTCCCAGACACACACTTCCTGGGCCT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGATGCTCAAGGTCTGTCTTCCCAGACACACACTTCCTGGGCCT  799

seq1  ACCACCCAGGAGTTCCAGGACTTCACAACATTGGAACACTGGCATCCACT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCAGGAGTTCCAGGACTTCACAACATTGGAACACTGGCATCCACT  849

seq1  GGAGTCCTAGAACTGAAAGAGCTGAATCCATGGGAGAGATTTTTAAATCT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCTAGAACTGAAAGAGCTGAATCCATGGGAGAGATTTTTAAATCT  899

seq1  CAAACTGCAACAATGACTCTAATTGTCAATCACTTTGGTGGAGAAGAAGA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGCAACAATGACTCTAATTGTCAATCACTTTGGTGGAGAAGAAGA  949

seq1  AAGAAGAGTGTTTCAGAGATACTGAACTGAGTTTTACAAGAGATTTGCAG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGTGTTTCAGAGATACTGAACTGAGTTTTACAAGAGATTTGCAG  999

seq1  AGAATTC  994
      |||||||
seq2  AGAATTC  1006


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