BAC Information

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BAC

Clone NameB6Ng01-288O04
Chromosome18 (Build37)
Map Location 88,989,617 - 88,990,788
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003
Downstream geneLOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288O04.bB6Ng01-288O04.g
ACCGA086434GA086435
length1,1871,197
definitionB6Ng01-288O04.b B6Ng01-288O04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgctttgttgaatatagatccatttctcttcttgtccctctgc
ctggtttagatgcctcaagcctagatgcagatacatgcaagtgtagctta
gcagaataagcctattgtgagggcttgatttgtttaggacttgagattga
attcaaaagtcagccagcagaatggtggctcatggacatgcacagactag
aggtccctctgcatccccagtgtaaatctcagtgagcatgagccatacat
tcacctggttcctgtaggacttcacagcagatacctcagggaggaattgc
atggagaggtagaggtgacatgttaccagtcttcccctaacaggagtggg
aacgactggtggaaggattgagagaaatacaatccttgaagtagttgcag
atcagtttagttaagaaactctctgttagctaccctactcattattatta
tattagattctgtcaggtgaaatcaaatagtttagttattctggttattt
taagttctggaggccctttattttcagctctgtatctagacagtagtatt
gaatatattataatatcagatatattaatagattcatataactagaccct
tgaggaacatttatttatatagttattgtaatacaggaccaagctgatgg
tctcaaacatcactgtaaacccaggatagtggttcacacctgcaaccaca
gcactgggaaagctgaaataagagcatggccatgagttcaaggctagggt
gggctacacactgagctctaggcaagccttagccatatgatgagactccc
acctcagaaaaccaaacataaaagtaaaaaaagaacaaatgagtaaaaat
aagttacctggcctaaaataacagaaaacatttcattgttatgaagtgat
agtcaatgggctcaggtacttatcattagctgaaaaactagaaccagcct
ttccatgtggccctgagctctctgacagcccaatggtaaggttcccttaa
cagagcacagtcaaagaccagcggttgctgatcctgaatgcctttcttct
acaggttctcctttcattttcctctgtaatcttgaccacaaatgcccctg
acttgttatctaactaagatgatcacacggaatgtttggagtgggttcaa
ctagagctcactctctgagttgatatctttggggtga
gaattctcacatgaggaatacctaatggatgagaaacacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tcaatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggatggcaggcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaactggacatagtactaccggaggatctcgccatacctctcctgggc
atatatccagaagatgtcccaaccagtaataaggacacatgctccactat
attcatagcagccttatttataatagccagaagctggaaagaacccagat
gtccctcaacaaaggaatgcatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atgaatggacctggaaggtatcatcctgagtgaggtaacccaatcacaaa
agaactcacatgatatatactcactgataagtggatattagcccagaaac
ttagaatacccaagatacaagatataatttgcaaaacacatgaaacacaa
gaagaacaaagaccaaagtgtggacaacttgccccttcttaaaattggga
acaaaacacccatggaaggagttatatagacaaagtttggagctgagaca
aaaggatggaccatctagagactgccatatccggggatccatcccataat
cagcttccaaatgctgacaccattgcatacactagcaagattttgctgaa
aggacccagatatagctgtctcttgtgagactatgccggggccctggcaa
acacagaagtggatgctcacagtcagctattggatggaacacagggcccc
caatgggaggagctagagatagtacccaaggagctaaaggggtctgcaac
ctataggtggaacaacaatatgaaactaacgagtaccccttgagctcatg
ttctcttagcctgcatatgtatcagagatggtctagtcgggccatccatg
ccagagaagcccttttgggtctttacaaacttatatgcctcaggtacagg
aaatggccaatggcaagaatgtgggaaatgcgggttgttgctttacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88989617_88990788
seq2: B6Ng01-288O04.b_45_1231 (reverse)

seq1  TCACC---AAGATA-CA--TCAGAGAAGTGACCTCTAGT--GACCCACT-  41
      |||||   |||||| ||  |||||| ||||| |||||||   ||||||| 
seq2  TCACCCCAAAGATATCAACTCAGAG-AGTGAGCTCTAGTTGAACCCACTC  49

seq1  CAAACATTCCTGTTGACCATTTTAGTTAAGATGACAAGTCAGGGGCA-TT  90
      ||||||||||   ||| ||| |||||| |||| |||||||||||||| ||
seq2  CAAACATTCCGTGTGATCATCTTAGTT-AGATAACAAGTCAGGGGCATTT  98

seq1  GT-GTCAGATTTACAGA-GAAAATGAAAAGGAGAA-CTGTAGAAGAAA-G  136
      || ||||   ||||||| ||||||| ||||||||| |||||||||||| |
seq2  GTGGTCAAGATTACAGAGGAAAATG-AAAGGAGAACCTGTAGAAGAAAGG  147

seq1  CA-TCAGGATCAGCAACCGCTGGTCTTTGACTGTGCTCTGTTAA-GGAAC  184
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CATTCAGGATCAGCAACCGCTGGTCTTTGACTGTGCTCTGTTAAGGGAAC  197

seq1  CTTACCATTGGGCTGTCAGAGAGCTCA-GGCCACATGGAAAGGCT-GTTC  232
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  CTTACCATTGGGCTGTCAGAGAGCTCAGGGCCACATGGAAAGGCTGGTTC  247

seq1  TAGTTTTTCAGCTAATGATAAGTAACTGAGCCCATTGACTATCACTTCAT  282
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAGTTTTTCAGCTAATGATAAGTACCTGAGCCCATTGACTATCACTTCAT  297

seq1  AACAATGAAATGTTTTCTGTTATTTTAGGCCAGGTAACTTATTTTTACTC  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGAAATGTTTTCTGTTATTTTAGGCCAGGTAACTTATTTTTACTC  347

seq1  ATTTGTTCTTTTTTTACTTTTATGTTTGGTTTTCTGAGGTGGGAGTCTCA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCTTTTTTTACTTTTATGTTTGGTTTTCTGAGGTGGGAGTCTCA  397

seq1  TCATATGGCTAAGGCTTGCCTAGAGCTCAGTGTGTAGCCCACCCTAGCCT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGGCTAAGGCTTGCCTAGAGCTCAGTGTGTAGCCCACCCTAGCCT  447

seq1  TGAACTCATGGCCATGCTCTTATTTCAGCTTTCCCAGTGCTGTGGTTGCA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCATGGCCATGCTCTTATTTCAGCTTTCCCAGTGCTGTGGTTGCA  497

seq1  GGTGTGAACCACTATCCTGGGTTTACAGTGATGTTTGAGACCATCAGCTT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAACCACTATCCTGGGTTTACAGTGATGTTTGAGACCATCAGCTT  547

seq1  GGTCCTGTATTACAATAACTATATAAATAAATGTTCCTCAAGGGTCTAGT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGTATTACAATAACTATATAAATAAATGTTCCTCAAGGGTCTAGT  597

seq1  TATATGAATCTATTAATATATCTGATATTATAATATATTCAATACTACTG  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAATCTATTAATATATCTGATATTATAATATATTCAATACTACTG  647

seq1  TCTAGATACAGAGCTGAAAATAAAGGGCCTCCAGAACTTAAAATAACCAG  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATACAGAGCTGAAAATAAAGGGCCTCCAGAACTTAAAATAACCAG  697

seq1  AATAACTAAACTATTTGATTTCACCTGACAGAATCTAATATAATAATAAT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTAAACTATTTGATTTCACCTGACAGAATCTAATATAATAATAAT  747

seq1  GAGTAGGGTAGCTAACAGAGAGTTTCTTAACTAAACTGATCTGCAACTAC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGGTAGCTAACAGAGAGTTTCTTAACTAAACTGATCTGCAACTAC  797

seq1  TTCAAGGATTGTATTTCTCTCAATCCTTCCACCAGTCGTTCCCACTCCTG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGATTGTATTTCTCTCAATCCTTCCACCAGTCGTTCCCACTCCTG  847

seq1  TTAGGGGAAGACTGGTAACATGTCACCTCTACCTCTCCATGCAATTCCTC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGAAGACTGGTAACATGTCACCTCTACCTCTCCATGCAATTCCTC  897

seq1  CCTGAGGTATCTGCTGTGAAGTCCTACAGGAACCAGGTGAATGTATGGCT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGTATCTGCTGTGAAGTCCTACAGGAACCAGGTGAATGTATGGCT  947

seq1  CATGCTCACTGAGATTTACACTGGGGATGCAGAGGGACCTCTAGTCTGTG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCACTGAGATTTACACTGGGGATGCAGAGGGACCTCTAGTCTGTG  997

seq1  CATGTCCATGAGCCACCATTCTGCTGGCTGACTTTTGAATTCAATCTCAA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCATGAGCCACCATTCTGCTGGCTGACTTTTGAATTCAATCTCAA  1047

seq1  GTCCTAAACAAATCAAGCCCTCACAATAGGCTTATTCTGCTAAGCTACAC  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAACAAATCAAGCCCTCACAATAGGCTTATTCTGCTAAGCTACAC  1097

seq1  TTGCATGTATCTGCATCTAGGCTTGAGGCATCTAAACCAGGCAGAGGGAC  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGTATCTGCATCTAGGCTTGAGGCATCTAAACCAGGCAGAGGGAC  1147

seq1  AAGAAGAGAAATGGATCTATATTCAACAAAGCATGAATTC  1172
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGAAATGGATCTATATTCAACAAAGCATGAATTC  1187