BAC Information

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BAC

Clone NameB6Ng01-289F23
Chromosome18 (Build37)
Map Location 89,651,931 - 89,652,796
singlet/doubletsinglet
Overlap geneDok6
Upstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226
Downstream geneLOC383320, LOC620693, Eif3s6-ps2, LOC665526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289F23.g
ACCGA086795
length914
definitionB6Ng01-289F23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttttttttcctcaaatacatagcttgatagaaaacggcatctca
catgaaaatagcgtcaactattcacccaaatttgttttgtaataaatatt
attttcaagaatatgtttttggaggttatggaggcttgccatgtatctaa
atcaagtaatcttgtgagagcgtggaggtaccactactctaactttgcta
taataagaaacatttgagaaaaaaatgttagacactaatacattatcttt
tgtcaaaaaatgtcttctttatctgatggctgggaatttttatccactct
atctcattgctccctggttttcagatgtggtaaaccaggacatgaagaaa
tgtagcactaatcattttacatatctgaaagccaggggaggcacatgttt
taaccaccaaaaaaccaaacaacccaatcaaaaaatggggtatgcaacta
aaacgagaactgaggaatctcgattggctgagaagcacctaaagaaatgt
tcaaagtcttaagtgatcaatgaaatgcaaatcaaaatgaccctgagatt
ccacctacaccaatcagaattgctaagatcaaaacttcaggtaacaacac
atgttggcaaggatgtggagaaagatgaacagtcctccattgctggtggg
attgaaaactggtacaaccactctggaaatcattctggaggttcctcaga
aaattggaaatagatctacctgaagacacagcaataacacttttacgaat
atacccaaaagatgcccaccatgccacagggacacatgtgttccaatatg
ttcatagcatatttatttgtgatagccaaagctggaaactacccagatgt
tcacgacagaagaatggatacagaaaatgtgttttcatttacacagtgga
acactactcatcta
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89651931_89652796
seq2: B6Ng01-289F23.g_100_965

seq1  GATAGAAAACAGTAACAGACAGGAAAATAGCAACAACTATTCACCCAAAT  50
      |||||||||| | | |  ||| |||||||||  |||||||||||||||||
seq2  GATAGAAAACGGCATCTCACATGAAAATAGCGTCAACTATTCACCCAAAT  50

seq1  TTGTTTTGTAATAAATAGTATTTTCAAAAAGATGTTTTTGGAGGTTATGG  100
      ||||||||||||||||| ||||||||| || |||||||||||||||||||
seq2  TTGTTTTGTAATAAATATTATTTTCAAGAATATGTTTTTGGAGGTTATGG  100

seq1  AGGCTTAGCATGTAGCTAAATCAAGTAATCTTGTGAGAGCATGGTGGTAC  150
      ||||||  |||||| ||||||||||||||||||||||||| ||| |||||
seq2  AGGCTTGCCATGTATCTAAATCAAGTAATCTTGTGAGAGCGTGGAGGTAC  150

seq1  CACTAGTCTAACTTTGCTATAATAAGAAACATTTGAGAAAAAAATGTTAG  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTCTAACTTTGCTATAATAAGAAACATTTGAGAAAAAAATGTTAG  200

seq1  ACACTAATACATTATCTTTTGTCAAAAAATGTCTTCATTAGCTGATGGCT  250
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  ACACTAATACATTATCTTTTGTCAAAAAATGTCTTCTTTATCTGATGGCT  250

seq1  GGTAATTTTTATCCACTCTATCTCATTGCTCCCTGTTTTTCAGATGTGGT  300
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGGAATTTTTATCCACTCTATCTCATTGCTCCCTGGTTTTCAGATGTGGT  300

seq1  AAACCAGGACATGAAGAAATGTAGCACTAAGCAGTTTACATATCTAGAAG  350
      |||||||||||||||||||||||||||||| || |||||||||||  |||
seq2  AAACCAGGACATGAAGAAATGTAGCACTAATCATTTTACATATCTGAAAG  350

seq1  CCAGGGGAGGCACATGTTTTAACCACCAAAAAACCAAACAACCCAATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGAGGCACATGTTTTAACCACCAAAAAACCAAACAACCCAATCAA  400

seq1  AAAATGGGGTATACAACTAAAACGAGAACTGAGGAATCTCGATTGGCTGA  450
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGGTATGCAACTAAAACGAGAACTGAGGAATCTCGATTGGCTGA  450

seq1  GAAGCACCTAAAGAAATGTTCAAAGTCTTAAGTGATCAATGAAATGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACCTAAAGAAATGTTCAAAGTCTTAAGTGATCAATGAAATGCAAA  500

seq1  TCAAAATGACCCTGAGATTCCACCTACACCAATCAGAATTGCTAAGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGACCCTGAGATTCCACCTACACCAATCAGAATTGCTAAGATCA  550

seq1  AAACTTCAGGTAACAACACATGTTGGCAAGGATGTGGAGAAAGATGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCAGGTAACAACACATGTTGGCAAGGATGTGGAGAAAGATGAACA  600

seq1  GTCCTCCATTGCTGGTGGGATTGAAAACTGGTACAACCACTCTGGAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCATTGCTGGTGGGATTGAAAACTGGTACAACCACTCTGGAAATC  650

seq1  ATTCTGGAGGTTCCTCGGAAAATTGGAAATAGATCTACCTGAAGACACAG  700
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTCTGGAGGTTCCTCAGAAAATTGGAAATAGATCTACCTGAAGACACAG  700

seq1  CAATAACACTTTCAGGAATATACCCAAAAGATGCCCACCATGCCACAGGG  750
      |||||||||||| | |||||||||||||||||||||||||||||||||||
seq2  CAATAACACTTTTACGAATATACCCAAAAGATGCCCACCATGCCACAGGG  750

seq1  ACACATGTGTTCCAATATGTTCATAGCAGATTTATTTGTGATAGCCAGAA  800
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  ACACATGTGTTCCAATATGTTCATAGCATATTTATTTGTGATAGCCA-AA  799

seq1  GCTGGAAACAACCCAGATGTTCACGACAGAAGAATGGATACAGAAAATGT  850
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAACTACCCAGATGTTCACGACAGAAGAATGGATACAGAAAATGT  849

seq1  G-TTTCATTTACACAGT  866
      | |||||||||||||||
seq2  GTTTTCATTTACACAGT  866