BAC Information

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BAC

Clone NameB6Ng01-290A22
Chromosome18 (Build37)7 (Build37)
Map Location 21,626,434 - 21,626,951129,899,986 - 129,901,091
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722
Downstream geneLOC225264, Klhl14, 4921528I01Rik, LOC546708, LOC100040547, Asxl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290A22.bB6Ng01-290A22.g
ACCGA087292GA087293
length9931,110
definitionB6Ng01-290A22.b B6Ng01-290A22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,626,434 - 21,626,951)(129,899,986 - 129,901,091)
sequence
gaattccagcgccagcatttgtttttgtttttttttttatttttttccat
tttttattaggtatttagctcatttacatttccaatgctataccaaaagt
cccccatagccacccaccccccactcccctaccaacccactccccttttt
tggccctggcgttcccctgtactggggcatataaagtttgcgtgtccaat
gggcctctctttccagtgatggccgcctaggccatcttttgatacatatg
cagctagagtcaagagctctggggtactggttagttcataatgttgttcc
acctatagggttgcagatcccttgagcttcttgggtactttctctagctc
cttcattggggaccatgtgatccatccaatagccgactgtgagcatccac
ttctatgtttgctaggcccaggcatactctgacaagagacagctatatca
gggtcctttcagcataatcttgctagtgtatgcaatggtgtcagcatttg
gaagctgattatgggatggatccccggatatggcagtctctacatggtcc
atctttttatctcagctccaaactttgtctctgtacctccttccaagggt
gttttgttcccacttctaaggaggggcatagtgtccacacttcagtcttc
atttttcttgagtttcatgtgtttaggaaattgtatcttatatcttggat
atcctaggttttgggctaatatccacttatcagtgagtacatattgtgtg
agttcctttgtgaatgtgttacctcactcaggatgatgccctccaggtcc
atccatttggctaggaatttcataaattcattctttttaatagctgagta
gtactccattgtgtagatgtaccacatttttctgtatccattcctctgtt
gaggggcatctgggttctttccagcttctggcttattataataagctgct
atgaacatagtggagcatgtttccttcttaccggttgggacat
gaattcatgtagaagaaaagcgtctttgtttgacagtttgggaaagcccg
tgagcatggtgcgcagccatgggcatgggctatcttgctgcataataatg
tagcagaggacatcacacagagagatgaagcaagtctatcatctccaatt
tcctccctctccttaaagccagcaatggctacatcaaagccccaccctct
gaagtcatctaattccagttacctcccaaggactctactataaatgccat
gagcagatttctagactaaagtctccagtacaagaattttgagggccata
attaactcatgacatcatagaaggctaattaatatggcctaagttatatc
aactgaagatatcccataatatgaagggcagcaaagtcctactctggcca
atgatgaaactacactcaaatcatcttacctctgactctcaagacttgaa
ctcagcccctgagagttcaggtagcggatgtgaaaaagggagatggctgt
ggccagggtttctagaacctacttaaatcttgcttgtgggcagagagagg
gctgaccaccaacaggggtaccaagttgctactgagccatggtggaaaca
gcctcaccacgctttagagaagaaaattgacaagctttttactatgctgc
aggtaaaacaggtaaaacaggaagaacaattgcctgcataagatgctggg
ctgcttgggacagggatggggtcttcttttttggagctggcctcattcat
ttgaataggaacagggtaagaaactactatcacccaatcctgtcctgcat
cctccatcatgcatatgaaggcaaatctgattggttgatgtacaattcta
gattgagatagcttacaggagtcaatgcagttagcagttcattacccacc
attctgtcagaagaagctcagtttcctgtcttagggatgctttctggacc
aagtttggctttgaaaaacctgctccatttctggtctcagtatagtcctt
cttctacacatagcaaactcacatgcttcagatacatctttggggtattg
tggtgtgccggtgggcatcacttgtaaccaggcaacaaacaggttctatg
tcactgagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_21626434_21626951
seq2: B6Ng01-290A22.b_63_552

seq1  TTTTTGTTTTTTTTTTTACACAGATATATAATACATTTTATTTTTTTTTT  50
      ||||||||||||||||||                             |||
seq2  TTTTTGTTTTTTTTTTTA-----------------------------TTT  21

seq1  CTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATA  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATA  71

seq1  CCAAAAGTCCCCCATACCCACCCA-CCCCCACTCCCCTACCCGCCCACTC  149
      |||||||||||||||| ||||||| ||||||||||||||||  |||||||
seq2  CCAAAAGTCCCCCATAGCCACCCACCCCCCACTCCCCTACCAACCCACTC  121

seq1  CCCCTTTTTGGCCCTGGCGTTCCCCTGTTCTGGGGCATATAAAGTTTGTG  199
      ||| |||||||||||||||||||||||| ||||||||||||||||||| |
seq2  CCCTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCG  171

seq1  TGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGA  249
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGCCTAGGCCATCTTTTGA  221

seq1  TACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAAT  299
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TACATATGCAGCTAGAGTCAAGAGCTCTGGGGTACTGGTTAGTTCATAAT  271

seq1  GTTGATCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTC  349
      |||| |||||||||||||||||||||||||| |||| |||||||||||||
seq2  GTTGTTCCACCTATAGGGTTGCAGATCCCTTGAGCTTCTTGGGTACTTTC  321

seq1  TCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGG  399
      |||||||||| |||||||  || ||||||||||||| |||| ||||||| 
seq2  TCTAGCTCCTTCATTGGGGACCATGTGATCCATCCAATAGCCGACTGTGA  371

seq1  GCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAG  449
      |||||||||||| |||||||||||||| |||||| ||| |||||||||||
seq2  GCATCCACTTCTATGTTTGCTAGGCCCAGGCATACTCTGACAAGAGACAG  421

seq1  CTACATCTGGGTCCTTTCGATAAAATCTTGCTAGTGTATGCAATGGTGTC  499
      ||| ||| ||||||||||   | |||||||||||||||||||||||||||
seq2  CTATATCAGGGTCCTTTCAGCATAATCTTGCTAGTGTATGCAATGGTGTC  471

seq1  AGCGTTTGGATGCTGATTA  518
      ||| |||||| ||||||||
seq2  AGCATTTGGAAGCTGATTA  490

seq1: chr7_129899986_129901091
seq2: B6Ng01-290A22.g_67_1176

seq1  GAATTCATGTAGAAGAAAAGCGTCTTTGTTTGACAGTTTGGGAAAGCCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAGAAGAAAAGCGTCTTTGTTTGACAGTTTGGGAAAGCCCG  50

seq1  TGAGCATGGTGCGCAGCCATGGGCATGGGCTATCTTGCTGCATAATAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGGTGCGCAGCCATGGGCATGGGCTATCTTGCTGCATAATAATG  100

seq1  TAGCAGAGGACATCACACAGAGAGATGAAGCAAGTCTATCATCTCCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAGGACATCACACAGAGAGATGAAGCAAGTCTATCATCTCCAATT  150

seq1  TCCTCCCTCTCCTTAAAGCCAGCAATGGCTACATCAAAGCCCCACCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTCTCCTTAAAGCCAGCAATGGCTACATCAAAGCCCCACCCTCT  200

seq1  GAAGTCATCTAATTCCAGTTACCTCCCAAGGACTCTACTATAAATGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCATCTAATTCCAGTTACCTCCCAAGGACTCTACTATAAATGCCAT  250

seq1  GAGCAGATTTCTAGACTAAAGTCTCCAGTACAAGAATTTTGAGGGCCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGATTTCTAGACTAAAGTCTCCAGTACAAGAATTTTGAGGGCCATA  300

seq1  ATTAACTCATGACATCATAGAAGGCTAATTAATATGGCCTAAGTTATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCATGACATCATAGAAGGCTAATTAATATGGCCTAAGTTATATC  350

seq1  AACTGAAGATATCCCATAATATGAAGGGCAGCAAAGTCCTACTCTGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGATATCCCATAATATGAAGGGCAGCAAAGTCCTACTCTGGCCA  400

seq1  ATGATGAAACTACACTCAAATCATCTTACCTCTGACTCTCAAGACTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAAACTACACTCAAATCATCTTACCTCTGACTCTCAAGACTTGAA  450

seq1  CTCAGCCCCTGAGAGTTCAGGTAGCGGATGTGAAAAAGGGAGATGGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCCCTGAGAGTTCAGGTAGCGGATGTGAAAAAGGGAGATGGCTGT  500

seq1  GGCCAGGGTTTCTAGAACCTACTTAAATCTTGCTTGTGGGCAGAGAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGGTTTCTAGAACCTACTTAAATCTTGCTTGTGGGCAGAGAGAGG  550

seq1  GCTGACCACCAACAGGGGTACCAAGTTGCTACTGAGCCATGGTGGAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCACCAACAGGGGTACCAAGTTGCTACTGAGCCATGGTGGAAACA  600

seq1  GCCTCACCACGCTTTAGAGAAGAAAATTGACAAGCTTTTTACTATGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACCACGCTTTAGAGAAGAAAATTGACAAGCTTTTTACTATGCTGC  650

seq1  AGGTAAAACAGGTAAAACAGGAAGAACAATTGCCTGCATAAGATGCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAACAGGTAAAACAGGAAGAACAATTGCCTGCATAAGATGCTGGG  700

seq1  CTGCTTGGGACAGGGATGGGGTCTTCTTTTTTGGAGCTGGCCTCATTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGGACAGGGATGGGGTCTTCTTTTTTGGAGCTGGCCTCATTCAT  750

seq1  TTGAATAGGAACAGGGTAAGAAACTACTATCACCCAATCCTGTCCTGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAGGAACAGGGTAAGAAACTACTATCACCCAATCCTGTCCTGCAT  800

seq1  CCTCCATCATGCATATGAAGGCAAATCTGATTGGTTGATGTACAATTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATCATGCATATGAAGGCAAATCTGATTGGTTGATGTACAATTCTA  850

seq1  GATTGAGATAGCTTACAGGAGTCAATGCAGTTAGCAGTTCATTACCCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGATAGCTTACAGGAGTCAATGCAGTTAGCAGTTCATTACCCACC  900

seq1  ATTCTGTCAGAAGAAGCTCAGTTTCCTGTCTTAGGGATGCTTTCTGGACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCAGAAGAAGCTCAGTTTCCTGTCTTAGGGATGCTTTCTGGACC  950

seq1  AAG-TTGGCTTTG-AAAACCTGCTCCATTTCTGGTCTCAGTTATAGTCCT  998
      ||| ||||||||| |||||||||||||||||||||||||| |||||||||
seq2  AAGTTTGGCTTTGAAAAACCTGCTCCATTTCTGGTCTCAG-TATAGTCCT  999

seq1  TCTTCTACACATAGCAAACTCACATGCTTCAGATACATCTTTGGGGTA-T  1047
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTTCTACACATAGCAAACTCACATGCTTCAGATACATCTTTGGGGTATT  1049

seq1  GT-GTGTGCGGTGGGGCATCACTTGTAACCA-GCAACAAACAAGTTCTAT  1095
      || |||||| |  |||||||||||||||||| |||||||||| |||||||
seq2  GTGGTGTGCCGGTGGGCATCACTTGTAACCAGGCAACAAACAGGTTCTAT  1099

seq1  GTCACTGAGCT  1106
      |||||||||||
seq2  GTCACTGAGCT  1110