BAC Information

Click to search

BAC

Clone NameB6Ng01-290C02
Chromosome18 (Build37)
Map Location 70,133,858 - 70,288,243
singlet/doubletdoublet
Overlap geneRab27b
Upstream geneLOC100043380, EG225681, Tcf4, Ccdc68
Downstream gene2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290C02.bB6Ng01-290C02.g
ACCGA087348GA087349
length2321,113
definitionB6Ng01-290C02.b B6Ng01-290C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,288,012 - 70,288,243)(70,133,858 - 70,134,962)
sequence
aggtaatgtatattatatagtgtgcagtgaggaatttctgtctccttaac
tggtcactgcttcttttttgttagaagcatttgaaactctctctctgtac
attttataaaatgcacaatgctttgtcatagatcagtggtgaggcccttg
cctgggattcatgagaacctgattttaagttaaaaagtgaagtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

gaattcacccactggtgataaaaattcttaaaagaaaaacagagtcgaca
gaactttgttatcgtgaggaagagcactcaagacagcctttcagctcata
tgtttaataaggaaagagtaagctctagcaatagggtaaacaggcaaaga
tgcctgctggcactacttatatggatagaagggggaaaggtgacaggaaa
ataaaggcgaggtactgtcttactcagggtttctattcctgcacaaacat
catgaccaagaaacaagttggagaggaaagggtttattcggttacacttc
catgctgctgttcatcaccaaaggaagtcaggactggaactcaaacaggt
cagggagcaggagctgatgcagaggccatggagggatgttctttactggc
ttgcttcccttggcttgctcagcctgctctcttatagaacccaggactac
cagcccagagatagtcccacccacaaggggccattcccccttgatcacta
attgagaaaatgccttacagttgtatctcatggaggcatttcctcaactc
aaactcctttctctgtgataactccagctgtgtcaggttgacacaaaact
agccagtacaggtacacaggcgacaaaggaaaaggtcagacttttcttcc
atatcttatatagttaatacagagaactcaaatgacccaaaaactatgag
tttccagatatctgagacagcaaatctaatgagagaagtttctaaatcat
aaatgtatacatgaagtggtatatatttttatattttttttatttacttg
acaatgataattgtagtggcttatgtgtatcaaaatattgtggtctatgc
cttgaatctatagttttaatttgtcaattatacttgaagctggacaaagt
aaaatattactaatataaataaagttaaagatcaccaattataaaattca
caagcaaactcatataacagttagtttaaaggaaagaaatgtatcataaa
tgggaaaaagaagaaacctaatcactttttttttatttttgacgaaagta
taaaaatactatccccacagaacaaagaatggtaaatgtactgaagacac
cttagaaactttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_70288012_70288243
seq2: B6Ng01-290C02.b_48_279 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACTTCACTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACTTCACTTTT  50

seq1  TAACTTAAAATCAGGTTCTCATGAATCCCAGGCAAGGGCCTCACCACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAAAATCAGGTTCTCATGAATCCCAGGCAAGGGCCTCACCACTGA  100

seq1  TCTATGACAAAGCATTGTGCATTTTATAAAATGTACAGAGAGAGAGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGACAAAGCATTGTGCATTTTATAAAATGTACAGAGAGAGAGTTTC  150

seq1  AAATGCTTCTAACAAAAAAGAAGCAGTGACCAGTTAAGGAGACAGAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTCTAACAAAAAAGAAGCAGTGACCAGTTAAGGAGACAGAAATT  200

seq1  CCTCACTGCACACTATATAATATACATTACCT  232
      ||||||||||||||||||||||||||||||||
seq2  CCTCACTGCACACTATATAATATACATTACCT  232


seq1: chr18_70133858_70134962
seq2: B6Ng01-290C02.g_65_1177

seq1  GAATTCACCCACTGGTGATAAAAATTCTTAAAAGAAAAACAGAGTCGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCACTGGTGATAAAAATTCTTAAAAGAAAAACAGAGTCGACA  50

seq1  GAACTTTGTTATCGTGAGGAAGAGCACTCAAGACAGCCTTTCAGCTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTGTTATCGTGAGGAAGAGCACTCAAGACAGCCTTTCAGCTCATA  100

seq1  TGTTTAATAAGGAAAGAGTAAGCTCTAGCAATAGGGTAAACAGGCAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATAAGGAAAGAGTAAGCTCTAGCAATAGGGTAAACAGGCAAAGA  150

seq1  TGCCTGCTGGCACTACTTATATGGATAGAAGGGGGAAAGGTGACAGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTGGCACTACTTATATGGATAGAAGGGGGAAAGGTGACAGGAAA  200

seq1  ATAAAGGCGAGGTACTGTCTTACTCAGGGTTTCTATTCCTGCACAAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGCGAGGTACTGTCTTACTCAGGGTTTCTATTCCTGCACAAACAT  250

seq1  CATGACCAAGAAACAAGTTGGAGAGGAAAGGGTTTATTCGGTTACACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCAAGAAACAAGTTGGAGAGGAAAGGGTTTATTCGGTTACACTTC  300

seq1  CATGCTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAACAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAACAGGT  350

seq1  CAGGGAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGC  400

seq1  TTGCTTCCCTTGGCTTGCTCAGCCTGCTCTCTTATAGAACCCAGGACTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCCTTGGCTTGCTCAGCCTGCTCTCTTATAGAACCCAGGACTAC  450

seq1  CAGCCCAGAGATAGTCCCACCCACAAGGGGCCATTCCCCCTTGATCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGAGATAGTCCCACCCACAAGGGGCCATTCCCCCTTGATCACTA  500

seq1  ATTGAGAAAATGCCTTACAGTTGTATCTCATGGAGGCATTTCCTCAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAAAATGCCTTACAGTTGTATCTCATGGAGGCATTTCCTCAACTC  550

seq1  AAACTCCTTTCTCTGTGATAACTCCAGCTGTGTCAGGTTGACACAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCTTTCTCTGTGATAACTCCAGCTGTGTCAGGTTGACACAAAACT  600

seq1  AGCCAGTACAGGTACACAGGCGACAAAGGAAAAGGTCAGACTTTTCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTACAGGTACACAGGCGACAAAGGAAAAGGTCAGACTTTTCTTCC  650

seq1  ATATCTTATATAGTTAATACAGAGAACTCAAATGACCCAAAAACTATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTATATAGTTAATACAGAGAACTCAAATGACCCAAAAACTATGAG  700

seq1  TTTCCAGATATCTGAGACAGCAAATCTAATGAGAGAAGTTTCTAAATCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGATATCTGAGACAGCAAATCTAATGAGAGAAGTTTCTAAATCAT  750

seq1  AAATGTATACATGAAGTGGTATATATTTTTATA-TTTTTTTATTTACTTG  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATGTATACATGAAGTGGTATATATTTTTATATTTTTTTTATTTACTTG  800

seq1  ACAATGATAATTGTAGTGGCTTATGTGTATCAAAATATTGTGGTCTATGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGATAATTGTAGTGGCTTATGTGTATCAAAATATTGTGGTCTATGC  850

seq1  CTTGAATCTATAGTTTTAATTTGTCAATTATACTTGAAGCTGGACAAAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATCTATAGTTTTAATTTGTCAATTATACTTGAAGCTGGACAAAGT  900

seq1  AAAATATTACTAATATAAATAAAGTTAAAGATCACCAATTATAAAATTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTACTAATATAAATAAAGTTAAAGATCACCAATTATAAAATTCA  950

seq1  CAAGCAAAACTCATATTAACAGTTAG-TTAAAGGAAAGAAATGTATCAAT  998
      ||||| ||||||||| |||||||||| |||||||||||||||||||| ||
seq2  CAAGC-AAACTCATA-TAACAGTTAGTTTAAAGGAAAGAAATGTATC-AT  997

seq1  AAATGG--AAAAG-AGAAACCTAAATCAACTTTTTTT--ATTTTGACGAA  1043
      ||||||  ||||| |||||||| |||||  |||||||   ||||||||||
seq2  AAATGGGAAAAAGAAGAAACCT-AATCACTTTTTTTTTATTTTTGACGAA  1046

seq1  AGTAT-AAAATACTAT-CCCACAGGACAAAGAATGTTAATGTTACTGAAG  1091
      ||||| |||||||||| ||||||| |||||||||| |||   ||||||||
seq2  AGTATAAAAATACTATCCCCACAGAACAAAGAATGGTAAATGTACTGAAG  1096

seq1  ACAC--TAGAAA-TTTC  1105
      ||||  |||||| ||||
seq2  ACACCTTAGAAACTTTC  1113


| Home | SequenceCutter | Blast | Download |