BAC Information

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BAC

Clone NameB6Ng01-290K09
Chromosome18 (Build37)
Map Location 69,352,188 - 69,473,567
singlet/doubletdoublet
Overlap geneLOC100043380, EG225681
Upstream geneD18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
Downstream geneTcf4, Ccdc68, Rab27b, 2310002L13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290K09.bB6Ng01-290K09.g
ACCGA087738GA087739
length1,1421,117
definitionB6Ng01-290K09.b B6Ng01-290K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,472,429 - 69,473,567)(69,352,188 - 69,353,293)
sequence
gaattcaattattcttccatgggcttttgttttgttttagctttttgttt
tggtcttcttgacctttgcttatttattttcttttttccttttttctttc
tttcttttttttttttttttttttttgtgggttttgcttgatttcttgct
ttttttttcctgagaaagagcgtaacgttgagtacagaggggggtgtata
tgggaggagttcgtgcaggggaaagagatataacatatattgagtagaaa
ccatctatttgaaataagagcaaaaattaaaattaaaatttggaatttta
tatggctaaattatttatattaaaatttattctggctttgttgcagatta
ttctctaataatctactgaaagatggtaattttgttttcttttgatttgt
tattatcttatcatttctgactgattttttttctgtgtaactacagcttt
accaaaattattaaaaatcgggtctagcatggggacatatagatagagcc
agcccattgcagcctgaaaaatcaattgaacaactgtgtcacatgttgtt
cagtggccatataagtaagtcaaaagactaatggcaagaactttggtcac
actagaaagaaagtgatctgctggttctgttcgacgtcacttcaaacatc
gaagtacaacctttagttacgctcaagttgcttcttaaaaactatggaac
acattgaaggatcaagagccctgtgggtggatttattgtccctgaagggt
gctatgccatttccttatgcaagcccttccctacccgagtcccggggaac
tgctgagaaaagtgtgtgtgtacaaactgtgcagttagcaaggtttcagc
ttaatggttttgtcacccagtatccgtctttattaaaatttgctctgcca
aaggaaaaagaaatcatcttcccaacttcttaagaaaatttaagtttaaa
agcttaccatcatgttccttcccttgctggtctgtgcatttcagacgttg
tcattctgaatggaaaaggattaccactcgaatcaagtgtgtgcagttag
caggccaaggacattccgtgggaaggttacagcctaaggagctgcctact
gaatcagctgatgattgaaggctgtgcacattcttggcttgg
gaattcaaggccagtacaggctcgatcgtgagactgcatcaaaggggaca
aggatgctccacttgtccttttaaaaagcaccatgagaacatgaagctgg
tattggcagggagaggcagtttctgtgttgtaataactgctgccgtaggg
gagggaggatccaggaacaggtgaaaatagaattctccagaggcaggtgg
cacgagacaagctgcccatgacctacttcttggactctctgatagagact
tgtaagtatgagacacgccttctggtcctgaccagaaaaccagcagagtc
atacagagtcagaaaaatgctagaatcccactgagggaagccagtgtctg
cagttaagagtaccagagagttccaataatccatagaggatgtaacaaga
tcactctgtgaatgagactgggtggtgtcaggcagcctggagctccagct
gaaggagcttacttgtaagtaacagaccaggaatgacaaggactctatgg
gaagtcaaggctacgggtgggaccagcttgcacgaagctctgtgtctgat
ccctaatgctgcatgcaatcacaagtctgtggtagtagacacaagaggac
cagtttccggtcatctttagctacacagcaagttcaagatgagtgggatc
taagagatctctctcaaaaaaaaaaccagttcattcaaaatgtcatacat
gcagctgtattttaagtaaaaccttccaagtcgccaacagtaatatttaa
agtcagatgtcaaggtgggaggcagatttttgagaccccccagttcacat
accttcttcttgctcagaggccagatccagcacagacatttgttccaaag
agaggtcctttcacttccttgtccctgcttacggttgggagccaggatag
gagactgcaaatctggctcttttttagtaaagctttattgggaacagaag
aggtgtgattagttttccatatcatctaagatctgggttttgtaccaaga
ccgcacagtgaacagggacagggttcgccagcatgcaacatctaaacgca
tttactacctacgcagaagaatgccttgcctaacctccagaagcgctgtg
taggtttcaagacactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_69472429_69473567
seq2: B6Ng01-290K09.b_43_1184 (reverse)

seq1  CCAAGCCAAGAGTGTGCCCAGGCATTTCCATCATCATGCTGGATACAGTA  50
      ||||||||||| ||||| ||| |  ||| ||||||| ||| ||| |||||
seq2  CCAAGCCAAGAATGTGCACAGCC--TTCAATCATCA-GCT-GATTCAGTA  46

seq1  GGC-GCTCCCTCTGCTGCTACCTTTCCCCCGAATGTCCTCTGCCTGCTAC  99
      ||| ||||| |  ||||  ||||| || | |||||||||  |||||||| 
seq2  GGCAGCTCCTTAGGCTGTAACCTTCCCACGGAATGTCCTTGGCCTGCTAA  96

seq1  TTGCAC-CACTTGATCTGAGTGGTAAT-CTTTTCCATTTCAGAATGACAA  147
       ||||| ||||||||  |||||||||| |||||||| |||||||||||||
seq2  CTGCACACACTTGATTCGAGTGGTAATCCTTTTCCA-TTCAGAATGACAA  145

seq1  CGTCTTGAAAATGCACAGACCCAGCA--GGGAGGAACATGAT-GTAAGCT  194
      |||||   ||||||||||| ||||||  || ||||||||||| |||||||
seq2  CGTCT--GAAATGCACAGA-CCAGCAAGGGAAGGAACATGATGGTAAGCT  192

seq1  TTTAAACTTAAATTTTCTTA--GAGTTGGG-AGATGATTTCTTTTTCCTT  241
      ||||||||||||||||||||   ||||||| ||||||||||||||||| |
seq2  TTTAAACTTAAATTTTCTTAAGAAGTTGGGAAGATGATTTCTTTTTCC-T  241

seq1  TTTGCAGAGCAAATTTTAATAAAGACGGATACTGGGTGACAAAACCATTG  291
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGGCAGAGCAAATTTTAATAAAGACGGATACTGGGTGACAAAACCATTA  291

seq1  AGCTGAAACCTTGCT-ACTGCACAGTTTGTACACACACACTTTTCTCAGC  340
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCTGAAACCTTGCTAACTGCACAGTTTGTACACACACACTTTTCTCAGC  341

seq1  AGTTCCCC-GGACTCGGGTAGGGAAGGGCTTGCATAAGG-AATGGCATAG  388
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  AGTTCCCCGGGACTCGGGTAGGGAAGGGCTTGCATAAGGAAATGGCATAG  391

seq1  CACCCTTCAGGGACAATAAATCCACCCACAGGGCTCTTGATCCTTCAATG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTCAGGGACAATAAATCCACCCACAGGGCTCTTGATCCTTCAATG  441

seq1  TGTTCCATAGTTTTTAAGAAGCAACTTGAGCGTAACTAAAGGTTGTACTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCATAGTTTTTAAGAAGCAACTTGAGCGTAACTAAAGGTTGTACTT  491

seq1  CGATGTTTGAAGTGACGTCGAACAGAACCAGCAGATCACTTTCTTTCTAG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTTTGAAGTGACGTCGAACAGAACCAGCAGATCACTTTCTTTCTAG  541

seq1  TGTGACCAAAGTTCTTGCCATTAGTCTTTTGACTTACTTATATGGCCACT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCAAAGTTCTTGCCATTAGTCTTTTGACTTACTTATATGGCCACT  591

seq1  GAACAACATGTGACACAGTTGTTCAATTGATTTTTCAGGCTGCAATGGGC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACATGTGACACAGTTGTTCAATTGATTTTTCAGGCTGCAATGGGC  641

seq1  TGGCTCTATCTATATGTCCCCATGCTAGACCCGATTTTTAATAATTTTGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTATCTATATGTCCCCATGCTAGACCCGATTTTTAATAATTTTGG  691

seq1  TAAAGCTGTAGTTACACAGAAAAAAAATCAGTCAGAAATGATAAGATAAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGTAGTTACACAGAAAAAAAATCAGTCAGAAATGATAAGATAAT  741

seq1  AACAAATCAAAAGAAAACAAAATTACCATCTTTCAGTAGATTATTAGAGA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCAAAAGAAAACAAAATTACCATCTTTCAGTAGATTATTAGAGA  791

seq1  ATAATCTGCAACAAAGCCAGAATAAATTTTAATATAAATAATTTAGCCAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGCAACAAAGCCAGAATAAATTTTAATATAAATAATTTAGCCAT  841

seq1  ATAAAATTCCAAATTTTAATTTTAATTTTTGCTCTTATTTCAAATAGATG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTCCAAATTTTAATTTTAATTTTTGCTCTTATTTCAAATAGATG  891

seq1  GTTTCTACTCAATATATGTTATATCTCTTTCCCCTGCACGAACTCCTCCC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTACTCAATATATGTTATATCTCTTTCCCCTGCACGAACTCCTCCC  941

seq1  ATATACACCCCCCTCTGTACTCAACGTTACGCTCTTTCTCAGGAAAAAAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACCCCCCTCTGTACTCAACGTTACGCTCTTTCTCAGGAAAAAAA  991

seq1  AAGCAAGAAATCAAGCAAAACCCACAAAAAAAAAAAAAAAAAAAAAAGAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGAAATCAAGCAAAACCCACAAAAAAAAAAAAAAAAAAAAAAGAA  1041

seq1  AGAAAGAAAAAAGGAAAAAAGAAAATAAATAAGCAAAGGTCAAGAAGACC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAAAAGGAAAAAAGAAAATAAATAAGCAAAGGTCAAGAAGACC  1091

seq1  AAAACAAAAAGCTAAAACAAAACAAAAGCCCATGGAAGAATAATTGAATT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAGCTAAAACAAAACAAAAGCCCATGGAAGAATAATTGAATT  1141

seq1  C  1139
      |
seq2  C  1142

seq1: chr18_69352188_69353293
seq2: B6Ng01-290K09.g_70_1186

seq1  GAATTCAAGGCCAGTACAGGCTCGATCGTGAGACTGCATCAAAGGGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGTACAGGCTCGATCGTGAGACTGCATCAAAGGGGACA  50

seq1  AGGATGCTCCACTTGTCCTTTTAAAAAGCACCATGAGAACATGAAGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCTCCACTTGTCCTTTTAAAAAGCACCATGAGAACATGAAGCTGG  100

seq1  TATTGGCAGGGAGAGGCAGTTTCTGTGTTGTAATAACTGCTGCCGTAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCAGGGAGAGGCAGTTTCTGTGTTGTAATAACTGCTGCCGTAGGG  150

seq1  GAGGGAGGATCCAGGAACAGGTGAAAATAGAATTCTCCAGAGGCAGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGATCCAGGAACAGGTGAAAATAGAATTCTCCAGAGGCAGGTGG  200

seq1  CACGAGACAAGCTGCCCATGACCTACTTCTTGGACTCTCTGATAGAGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGACAAGCTGCCCATGACCTACTTCTTGGACTCTCTGATAGAGACT  250

seq1  TGTAAGTATGAGACACGCCTTCTGGTCCTGACCAGAAAACCAGCAGAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTATGAGACACGCCTTCTGGTCCTGACCAGAAAACCAGCAGAGTC  300

seq1  ATACAGAGTCAGAAAAATGCTAGAATCCCACTGAGGGAAGCCAGTGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGTCAGAAAAATGCTAGAATCCCACTGAGGGAAGCCAGTGTCTG  350

seq1  CAGTTAAGAGTACCAGAGAGTTCCAATAATCCATAGAGGATGTAACAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGAGTACCAGAGAGTTCCAATAATCCATAGAGGATGTAACAAGA  400

seq1  TCACTCTGTGAATGAGACTGGGTGGTGTCAGGCAGCCTGGAGCTCCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGTGAATGAGACTGGGTGGTGTCAGGCAGCCTGGAGCTCCAGCT  450

seq1  GAAGGAGCTTACTTGTAAGTAACAGACCAGGAATGACAAGGACTCTATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGCTTACTTGTAAGTAACAGACCAGGAATGACAAGGACTCTATGG  500

seq1  GAAGTCAAGGCTACGGGTGGGACCAGCTTGCACGAAGCTCTGTGTCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAAGGCTACGGGTGGGACCAGCTTGCACGAAGCTCTGTGTCTGAT  550

seq1  CCCTAATGCTGCATGCAATCACAAGTCTGTGGTAGTAGACACAAGAGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATGCTGCATGCAATCACAAGTCTGTGGTAGTAGACACAAGAGGAC  600

seq1  CAGTTTCCGGTCATCTTTAGCTACACAGCAAGTTCAAGATGAGTGGGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCGGTCATCTTTAGCTACACAGCAAGTTCAAGATGAGTGGGATC  650

seq1  TAAGAGATCTCTCTCAAAAAAAAAACCAGTTCATTCAAAATGTCATACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGATCTCTCTCAAAAAAAAAACCAGTTCATTCAAAATGTCATACAT  700

seq1  GCAGCTGTATTTTAAGTAAAACCTTCCAAGTCGCCAACAGTAATATTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGTATTTTAAGTAAAACCTTCCAAGTCGCCAACAGTAATATTTAA  750

seq1  AGTCAGATGTCAAGGTGGGAGGCAGATTTTTGAGACCCCCCAGTTCACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATGTCAAGGTGGGAGGCAGATTTTTGAGACCCCCCAGTTCACAT  800

seq1  ACCTTCTTCTTGCTCAGAGGCCAGATCCAGCACAGACATTTGTTCCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTTCTTGCTCAGAGGCCAGATCCAGCACAGACATTTGTTCCAAAG  850

seq1  AGAGGTCCTTTCACTTCCTTGTCCCTGCTTACGGTT-GGAGCCAGGATAG  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGAGGTCCTTTCACTTCCTTGTCCCTGCTTACGGTTGGGAGCCAGGATAG  900

seq1  GAGACTGCAAATCTGGCTC-TTTTTAGTAAAGCTTTATTGGG-ACAG-AG  946
      ||||||||||||||||||| |||||||||||||||||||||| |||| ||
seq2  GAGACTGCAAATCTGGCTCTTTTTTAGTAAAGCTTTATTGGGAACAGAAG  950

seq1  AGGTGTGATTAG-TTTCCATATCATCT-AGATCT-GGTTTTGTACCAAGA  993
      |||||||||||| |||||||||||||| |||||| |||||||||||||||
seq2  AGGTGTGATTAGTTTTCCATATCATCTAAGATCTGGGTTTTGTACCAAGA  1000

seq1  CCGCACAGTTGAACAGGGACAGGGGTTTCGGCAGCATGCAACATCT-AAC  1042
      |||||||| |||||||||||||||  |||| ||||||||||||||| |||
seq2  CCGCACAG-TGAACAGGGACAGGG--TTCGCCAGCATGCAACATCTAAAC  1047

seq1  GCATTTACTA-CTACGCAG-AGAATG-CTTG-CTAACTCCCAG-AGCGCT  1087
      |||||||||| |||||||| |||||| |||| |||||  |||| ||||||
seq2  GCATTTACTACCTACGCAGAAGAATGCCTTGCCTAACCTCCAGAAGCGCT  1097

seq1  GTGTAG--TTCAAGACCACTG  1106
      ||||||  ||||||| |||||
seq2  GTGTAGGTTTCAAGA-CACTG  1117