BAC Information

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BAC

Clone NameB6Ng01-292J02
Chromosome18 (Build37)
Map Location 63,425,676 - 63,621,763
singlet/doubletdoublet
Overlap gene9030411M15Rik
Upstream geneHtr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik
Downstream geneLOC627792, Txnl1, Wdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292J02.bB6Ng01-292J02.g
ACCGA089175GA089176
length1,151769
definitionB6Ng01-292J02.b B6Ng01-292J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,620,584 - 63,621,763)(63,425,676 - 63,426,444)
sequence
gaattcccatatactttgtctctgtcttctcttcctacaagtttcttcta
ttattatttatcaatatttatttttattcaggtgtgtaacaggcagagga
gcttataaattctatagtgtatatgtggaggttagaggacagcttggaag
aactgatcttctctttctatcacctgggactcaggttgtcaggtttggca
gcaagtgcctttcaccactgaaccatccccatggcccagtttactcttag
aacagacaacttagattctggaatttacccagataggttgaccagatgac
ccaggcaaatatgtctccagcataaggatatgggagcctttaaacctcca
agcatctgttcttggcttcctgaatgaactgtgatgatcctggtactcag
tgctgctgacttcttttccttatggatttttcttcctatctagttctttt
attttctttctaccaacataggaatgatacgctatttctatttatagcaa
taatgtttgggaatttggtttattatctggccaattgatagtattcattg
gattagaaattatacctatctttgtcaagtaagtgatgataaaggatcca
ttttgtatttttttttgtctgattgcctatttgtgaattcaagtagatta
agaacttcatgccccttgggaaggtgagagtggagaggctttgtgtgtct
atatttagtcttgacccacaggccaaactttagaattaaaacaaaaaact
aagagccaggcatggtggcacatgcttttaattcctgtgcttggaaggaa
gagtcaggcaggtctctgtgccttcaaggctagccttaaaggtctatata
gcgagtttcagacagccagagctatatactgagaccctgtcttaaaaaaa
accaaaccaaaccaaaccaaaccaaaccaaacctaaccaaacaaacaaca
atcaaacaaacaaccaacaaccaaacaaccaaacaaaacaaactggcatg
cagcatgcactgaaatactgtctactgggaacatgcagtaagaagttgag
tcagaagtagcctgtgctactaagcaagctctagccagtaataaatcact
aaccagcttctctatggatagtgttctgataggagtctttagcaagtctt
t
gaattccccatccatcacttactgagtggcaaactcttgttgatttggaa
atgtcctcattaaataggatagttttgctgggttaggtatagaatgtccc
aaactatagcttctgggatggtgacctagcttggaggcctcaagatgcta
tctctgcatctggaaaaaaaatagcccagaggccctgaaacagcaaagca
cgtgttcttgtctgtattagcttgcattatccgtacaagttagctctgtg
acagcctagctttctgtagatttcctggttcgatgacagttttccagtac
ctgctctgcatgctttcgcatgtctgcctttgttcacagaccctactcat
ccttcagttagctcactggtttgtccatgacttttggcttttgcccagag
taagagatgctgcaagaattctttctgtgatcatgtgtattccaaatcgc
gattgtagcctgaagtcccatgtttgcacatctcttagccatttctgtat
ctattttcacaactgatgactgtggtctctatcccagagttatgttggga
ccatgtgaggagcaacagtgaaacattaatgtatgtcttagaggggtgaa
gagtggtagctgactgaagggtggctgagtgtgtgtgcacacacatgtgc
gtgtgtgtgtgtatgtgtgtgtgtttatgtgtgtgggcaatagtgatggc
agattgcagtttggagttttactgcctctggtaataatcttcgagataaa
tgaattcagctggaaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_63620584_63621763
seq2: B6Ng01-292J02.b_46_1196 (reverse)

seq1  AAAGACTTGCTAAAGACCTCCCCAAATTACAGACACACTCATCCATAGAG  50
      |||||||||||||||| ||||     |  |||| ||||| ||||||||||
seq2  AAAGACTTGCTAAAGA-CTCC-----TATCAGA-ACACT-ATCCATAGAG  42

seq1  -AGCTGTTTAGTGATTTTATTACT-GCTAGGAGCCTTGCTAAGTAGCACA  98
       ||||| ||||||| ||||||||| |||| ||| |||||| |||||||||
seq2  AAGCTGGTTAGTGA-TTTATTACTGGCTA-GAG-CTTGCTTAGTAGCACA  89

seq1  GGCTAC-TCTGAACTCAACCTTCCTACTGCCATGTCCCCAGTAGACAGTA  147
      |||||| |||| |||||| |||| ||||| ||||| ||||||||||||||
seq2  GGCTACTTCTG-ACTCAA-CTTCTTACTG-CATGTTCCCAGTAGACAGTA  136

seq1  TTTCAGGTGCATGGCTGCATGCCAGTTTTGTTTTGGTTTGGTTTGTTTTG  197
      ||||| |||||| |||||||||||| |||||||| ||||||||       
seq2  TTTCA-GTGCAT-GCTGCATGCCAG-TTTGTTTT-GTTTGGTT-------  175

seq1  GTTTGTTTTGGTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGGTTTG  247
      ||||| ||  ||| |||    |||||||  || |  |||| ||||||| |
seq2  GTTTGGTT--GTTGGTT---GTTTGTTTGATTGTTGTTTG-TTTGGTTAG  219

seq1  GTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTTTTTTAAGACAGGGTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTTTTTTAAGACAGGGTC  269

seq1  TCAGTATATAGCTCTGGCTGTCCTGAAACTCGCTATATAGACCTTTAAGG  347
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCAGTATATAGCTCTGGCTGT-CTGAAACTCGCTATATAGACCTTTAAGG  318

seq1  CTAGCCTTGAAGGCACAGAGACCTGCCTGACTCTTCCTTCCAAGCACAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTGAAGGCACAGAGACCTGCCTGACTCTTCCTTCCAAGCACAGG  368

seq1  AATTAAAAGCATGTGCCACCATGCCTGGCTCTTAGTTTTTTGTTTTAATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAGCATGTGCCACCATGCCTGGCTCTTAGTTTTTTGTTTTAATT  418

seq1  CTAAAGTTTGGCCTGTGGGTCAAGACTAAATATAGACACACAAAGCCTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTTTGGCCTGTGGGTCAAGACTAAATATAGACACACAAAGCCTCT  468

seq1  CCACTCTCACCTTCCCAAGGGGCATGAAGTTCTTAATCTACTTGAATTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTCACCTTCCCAAGGGGCATGAAGTTCTTAATCTACTTGAATTCA  518

seq1  CAAATAGGCAATCAGACAAAAAAAAATACAAAATGGATCCTTTATCATCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGGCAATCAGACAAAAAAAAATACAAAATGGATCCTTTATCATCA  568

seq1  CTTACTTGACAAAGATAGGTATAATTTCTAATCCAATGAATACTATCAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTGACAAAGATAGGTATAATTTCTAATCCAATGAATACTATCAAT  618

seq1  TGGCCAGATAATAAACCAAATTCCCAAACATTATTGCTATAAATAGAAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGATAATAAACCAAATTCCCAAACATTATTGCTATAAATAGAAAT  668

seq1  AGCGTATCATTCCTATGTTGGTAGAAAGAAAATAAAAGAACTAGATAGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTATCATTCCTATGTTGGTAGAAAGAAAATAAAAGAACTAGATAGGA  718

seq1  AGAAAAATCCATAAGGAAAAGAAGTCAGCAGCACTGAGTACCAGGATCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATCCATAAGGAAAAGAAGTCAGCAGCACTGAGTACCAGGATCAT  768

seq1  CACAGTTCATTCAGGAAGCCAAGAACAGATGCTTGGAGGTTTAAAGGCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTCATTCAGGAAGCCAAGAACAGATGCTTGGAGGTTTAAAGGCTC  818

seq1  CCATATCCTTATGCTGGAGACATATTTGCCTGGGTCATCTGGTCAACCTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCCTTATGCTGGAGACATATTTGCCTGGGTCATCTGGTCAACCTA  868

seq1  TCTGGGTAAATTCCAGAATCTAAGTTGTCTGTTCTAAGAGTAAACTGGGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTAAATTCCAGAATCTAAGTTGTCTGTTCTAAGAGTAAACTGGGC  918

seq1  CATGGGGATGGTTCAGTGGTGAAAGGCACTTGCTGCCAAACCTGACAACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGATGGTTCAGTGGTGAAAGGCACTTGCTGCCAAACCTGACAACC  968

seq1  TGAGTCCCAGGTGATAGAAAGAGAAGATCAGTTCTTCCAAGCTGTCCTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCCAGGTGATAGAAAGAGAAGATCAGTTCTTCCAAGCTGTCCTCT  1018

seq1  AACCTCCACATATACACTATAGAATTTATAAGCTCCTCTGCCTGTTACAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCACATATACACTATAGAATTTATAAGCTCCTCTGCCTGTTACAC  1068

seq1  ACCTGAATAAAAATAAATATTGATAAATAATAATAGAAGAAACTTGTAGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAATAAAAATAAATATTGATAAATAATAATAGAAGAAACTTGTAGG  1118

seq1  AAGAGAAGACAGAGACAAAGTATATGGGAATTC  1180
      |||||||||||||||||||||||||||||||||
seq2  AAGAGAAGACAGAGACAAAGTATATGGGAATTC  1151

seq1: chr18_63425676_63426444
seq2: B6Ng01-292J02.g_63_831

seq1  GAATTCCCCATCCATCACTTACTGAGTGGCAAACTCTTGTTGATTTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCATCCATCACTTACTGAGTGGCAAACTCTTGTTGATTTGGAA  50

seq1  ATGTCCTCATTAAATAGGATAGTTTTGCTGGGTTAGGTATAGAATGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTCATTAAATAGGATAGTTTTGCTGGGTTAGGTATAGAATGTCCC  100

seq1  AAACTATAGCTTCTGGGATGGTGACCTAGCTTGGAGGCCTCAAGATGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATAGCTTCTGGGATGGTGACCTAGCTTGGAGGCCTCAAGATGCTA  150

seq1  TCTCTGCATCTGGAAAAAAAATAGCCCAGAGGCCCTGAAACAGCAAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCATCTGGAAAAAAAATAGCCCAGAGGCCCTGAAACAGCAAAGCA  200

seq1  CGTGTTCTTGTCTGTATTAGCTTGCATTATCCGTACAAGTTAGCTCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTCTTGTCTGTATTAGCTTGCATTATCCGTACAAGTTAGCTCTGTG  250

seq1  ACAGCCTAGCTTTCTGTAGATTTCCTGGTTCGATGACAGTTTTCCAGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTAGCTTTCTGTAGATTTCCTGGTTCGATGACAGTTTTCCAGTAC  300

seq1  CTGCTCTGCATGCTTTCGCATGTCTGCCTTTGTTCACAGACCCTACTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGCATGCTTTCGCATGTCTGCCTTTGTTCACAGACCCTACTCAT  350

seq1  CCTTCAGTTAGCTCACTGGTTTGTCCATGACTTTTGGCTTTTGCCCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTTAGCTCACTGGTTTGTCCATGACTTTTGGCTTTTGCCCAGAG  400

seq1  TAAGAGATGCTGCAAGAATTCTTTCTGTGATCATGTGTATTCCAAATCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGATGCTGCAAGAATTCTTTCTGTGATCATGTGTATTCCAAATCGC  450

seq1  GATTGTAGCCTGAAGTCCCATGTTTGCACATCTCTTAGCCATTTCTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTAGCCTGAAGTCCCATGTTTGCACATCTCTTAGCCATTTCTGTAT  500

seq1  CTATTTTCACAACTGATGACTGTGGTCTCTATCCCAGAGTTATGTTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCACAACTGATGACTGTGGTCTCTATCCCAGAGTTATGTTGGGA  550

seq1  CCATGTGAGGAGCAACAGTGAAACATTAATGTATGTCTTAGAGGGGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGAGGAGCAACAGTGAAACATTAATGTATGTCTTAGAGGGGTGAA  600

seq1  GAGTGGTAGCTGACTGAAGGGTGGCTGAGTGTGTGTGCACACACATGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTAGCTGACTGAAGGGTGGCTGAGTGTGTGTGCACACACATGTGC  650

seq1  GTGTGTGTGTGTATGTGTGTGTGTTTATGTGTGTGTGCAATAGTAATTAA  700
      ||||||||||||||||||||||||||||||||||| |||||||| ||   
seq2  GTGTGTGTGTGTATGTGTGTGTGTTTATGTGTGTGGGCAATAGTGATGGC  700

seq1  AGATTGCATTTTGGAGTTTTACTGCCTCTGGTAGTAATCTTCCAGAT-AA  749
      |||||||| |||||||||||||||||||||||| |||||||| |||| ||
seq2  AGATTGCAGTTTGGAGTTTTACTGCCTCTGGTAATAATCTTCGAGATAAA  750

seq1  TGAATTCAGCCTGGAAACAA  769
      ||||||||| ||||||||||
seq2  TGAATTCAG-CTGGAAACAA  769