BAC Information

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BAC

Clone NameB6Ng01-293G23
Chromosome18 (Build37)
Map Location 30,487,604 - 30,488,729
singlet/doubletsinglet
Overlap genePik3c3
Upstream gene4930578E11Rik, LOC666073
Downstream geneLOC666094, LOC666100, EG666111, EG666114, LOC433168, Rit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293G23.bB6Ng01-293G23.g
ACCGA089818GA089819
length1,106379
definitionB6Ng01-293G23.b B6Ng01-293G23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaggtctgctgtttatcagtgcttgcaagaaaattcacaggtc
gaggttacgactcaattgcatggattgtaggttctaacagtgaaaccgtt
gttgaatttcacaagttcaaagagccatgtattttaagaggatattaatt
ttaagaaaatttaaaaagcgcaccttataaaataaaaaaaaaaaaatcaa
gaaattcaagaagcgcgttcataaccacacacaagcaagcagtaaagtgt
gtacaaagcaaaccagtcacccatggtaattctctcctctgaccctacaa
gacatagtaaatgagctgctaaggaaatgtggttgagtgacaccaaccta
ttacaaatttgatttattgttattctttcacacacattactaaaattaaa
catttaatggcagacaatctgaaagtcatttttactttgtcccaccctgc
ttggcatcccactcgtttgctccctgtccatcttctgtcactcctgctct
gaaaattctaacctcctaagatcccctataatcccaaccgtagggctgcc
tctctcactctattccatggttagttcagcttctttctgtagacaaccat
tttaccatttccccttaattcctttatttctttcctatgtgactatacct
ttcttgttgttttatcagtaaactcagaaacaaaaatgtcgcccaaagtg
ataccattgtaaagaacctcagacttaggccagctgcacgcccaccataa
gcaatgtagcaataccaatgatgtttattaaatggagtctcatagccagc
taaggccaaggaaccacttttacagtaattctaacaaagggttggatata
taaattcaaatcagtactgacatcctaataatctgctaatcatttcccct
ttaacctaagagagcttcttatgaaaacacaagattaaactaaggaaacc
agagtaacaaggatagtatacctgacttcacagtcaagttcactcagaga
tgagaatcaccttaaattcacacatactcgacaaagaaataacactctac
ttgtttggaatatcgagtgttacttatctgataccttggaaatataacac
ttaata

ttaatgaatggtgatctgatgataagatgtaaaaggttagtttaattttc
ttgtatctgttgaggcttgctttgtgaccaagtatatggttaattttgga
gaaggtttcatggtgtgctgagaaggtatttttttgtgtgtgtttaggta
aaatgttatgtagatatctgctaggtccatttgattcataacatcagtta
gtttcattatttacccatttagtttcaatctcaatgagcagtccattggt
gagagtatggtgttggagtgtagaaatctcccactattaatgtgtggggt
ttgatgtgtgatttgagctttagtaatgtttgtttgtttgtttgcttccg
tttcatatataagctgaaatgtaaaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_30487604_30488729
seq2: B6Ng01-293G23.b_50_1155 (reverse)

seq1  TATTTAGTGTTATAATTTCTATGTATCAGATAAGGTACACTTCGATATTT  50
      |||| ||||||||| || | | ||||||||||||  |||| |||||| ||
seq2  TATTAAGTGTTATATTTCCAAGGTATCAGATAAGTAACAC-TCGATA-TT  48

seq1  CAAAACAAGTAGAGTGTTTAATTTTCCTTTGTCGGGGTATGGTGTGATTT  100
      | ||||||||||||||||  ||||  ||||||| | |||| |||||| ||
seq2  CCAAACAAGTAGAGTGTT--ATTT--CTTTGTC-GAGTAT-GTGTGAATT  92

seq1  TAAGGTTGTTTTTCTTTTTTCTTCTGGAGTGGAACTTGACTGTGGAGTCA  150
      ||||   ||  ||||  | |||    |||| ||||||||||||| |||||
seq2  TAAG---GTGATTCTCATCTCT----GAGT-GAACTTGACTGTGAAGTCA  134

seq1  GGTATACTATCCTTGTTACTCCTGGTTTCCTTAGTTTAATCTTGTTGTTT  200
      |||||||||||||||||||| ||||||||||||||||||||||||   ||
seq2  GGTATACTATCCTTGTTACT-CTGGTTTCCTTAGTTTAATCTTGT--GTT  181

seq1  TTCATAAGAAGCTCTTCTTAGGTTAAAGGGGAAATGATTAGCAGATTATT  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCATAAGAAGCTC-TCTTAGGTTAAAGGGGAAATGATTAGCAGATTATT  230

seq1  AGGATGTCAGTACTGATTTGAATTTATATATCCAACCCTTTGTTAGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTCAGTACTGATTTGAATTTATATATCCAACCCTTTGTTAGAATT  280

seq1  ACTGTAAAAGTGGTTCCTTGGCCTTAGCTGGCTATGAGACTCCATTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAAAGTGGTTCCTTGGCCTTAGCTGGCTATGAGACTCCATTTAAT  330

seq1  AAACATCATTGGTATTGCTACATTGCTTATGGTGGGCGTGCAGCTGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCATTGGTATTGCTACATTGCTTATGGTGGGCGTGCAGCTGGCCT  380

seq1  AAGTCTGAGGTTCTTTACAATGGTATCACTTTGGGCGACATTTTTGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGAGGTTCTTTACAATGGTATCACTTTGGGCGACATTTTTGTTTC  430

seq1  TGAGTTTACTGATAAAACAACAAGAAAGGTATAGTCACATAGGAAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTACTGATAAAACAACAAGAAAGGTATAGTCACATAGGAAAGAAA  480

seq1  TAAAGGAATTAAGGGGAAATGGTAAAATGGTTGTCTACAGAAAGAAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAATTAAGGGGAAATGGTAAAATGGTTGTCTACAGAAAGAAGCTG  530

seq1  AACTAACCATGGAATAGAGTGAGAGAGGCAGCCCTACGGTTGGGATTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACCATGGAATAGAGTGAGAGAGGCAGCCCTACGGTTGGGATTATA  580

seq1  GGGGATCTTAGGAGGTTAGAATTTTCAGAGCAGGAGTGACAGAAGATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCTTAGGAGGTTAGAATTTTCAGAGCAGGAGTGACAGAAGATGGA  630

seq1  CAGGGAGCAAACGAGTGGGATGCCAAGCAGGGTGGGACAAAGTAAAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGCAAACGAGTGGGATGCCAAGCAGGGTGGGACAAAGTAAAAATG  680

seq1  ACTTTCAGATTGTCTGCCATTAAATGTTTAATTTTAGTAATGTGTGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGATTGTCTGCCATTAAATGTTTAATTTTAGTAATGTGTGTGAA  730

seq1  AGAATAACAATAAATCAAATTTGTAATAGGTTGGTGTCACTCAACCACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAACAATAAATCAAATTTGTAATAGGTTGGTGTCACTCAACCACAT  780

seq1  TTCCTTAGCAGCTCATTTACTATGTCTTGTAGGGTCAGAGGAGAGAATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAGCAGCTCATTTACTATGTCTTGTAGGGTCAGAGGAGAGAATTA  830

seq1  CCATGGGTGACTGGTTTGCTTTGTACACACTTTACTGCTTGCTTGTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGTGACTGGTTTGCTTTGTACACACTTTACTGCTTGCTTGTGTGT  880

seq1  GGTTATGAACGCGCTTCTTGAATTTCTTGATTTTTTTTTTTTTATTTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGAACGCGCTTCTTGAATTTCTTGATTTTTTTTTTTTTATTTTAT  930

seq1  AAGGTGCGCTTTTTAAATTTTCTTAAAATTAATATCCTCTTAAAATACAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCGCTTTTTAAATTTTCTTAAAATTAATATCCTCTTAAAATACAT  980

seq1  GGCTCTTTGAACTTGTGAAATTCAACAACGGTTTCACTGTTAGAACCTAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTTGAACTTGTGAAATTCAACAACGGTTTCACTGTTAGAACCTAC  1030

seq1  AATCCATGCAATTGAGTCGTAACCTCGACCTGTGAATTTTCTTGCAAGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATGCAATTGAGTCGTAACCTCGACCTGTGAATTTTCTTGCAAGCA  1080

seq1  CTGATAAACAGCAGACCTTGGAATTC  1126
      ||||||||||||||||||||||||||
seq2  CTGATAAACAGCAGACCTTGGAATTC  1106


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