BAC Information

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BAC

Clone NameB6Ng01-294M10
Chromosome18 (Build37)
Map Location 55,501,851 - 55,621,243
singlet/doubletdoublet
Overlap genenone
Upstream geneEG545257, LOC100042489, Zfp608, LOC100043089
Downstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294M10.bB6Ng01-294M10.g
ACCGA090817GA090818
length1,1511,136
definitionB6Ng01-294M10.b B6Ng01-294M10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,620,080 - 55,621,243)(55,501,851 - 55,502,981)
sequence
gaattctggaagcctgcattccacggtacttagacaattctgaagggttc
ttgctacctctcagtgactgaactctcagtttcaggaacccagatccttt
cttgtctcttcaaagaaaggtagattccacctgtctcttgtccttggtat
tgattcttaaatcccaagagcagagacgtccaatacagagaaaaggaccc
cttcccagagtagaagaccctggttcctcactggtgggtcttgtttgtgt
tagctccatccctcccatggcactaagctcctcccaaaccaggcagcagt
tccagatcccttccttgtagcttgaaagagacaagagacagaaaggtgat
tatgaagacattttaagagagaagggaaagtctcccaaagagctgaatcc
tatggaagcaaagctaatggtgcctttcagacgacttaaacagggggacc
tgggatccgagggcctgacagaatgggactggacacagtctgatgctgga
aagaagtttacttcaggttcactgtacatttacacagtcatgtaaggaag
aaagcggtggtccaaggaacgctgtttgagttcagaaaaacacaatctga
aaaccatgtaaagaaacacagtcagtaagcccatgtaaatattaacagag
gagccctttcaggagagaccaatgtaaacacaactgtctggcccatacta
gagattatatctgggaaagcatgaaagcgaggcagaaggccatatactca
gggtatactcaccagattgagttctatacaatgatctgacatccagtgag
aataaacctgtcttgtaaattgaatataaatgtttgtcatgggagacatg
aaaatcatgaccaagaaccgtccaaggaacaaagtgcacctggggtaaaa
ggtcctctgccttttctcccggagcctctctcagttcccccaactcattg
ttcaacatgaagaggccctctccctgccctacagggtggtggtcatagtg
tgtgtgcctctgatgggtgtattgggatttcccatggttgagaacaagcc
tggtccacaataagaagaggaacaaagccctttgggttctttgtagaaac
tgatacatgggtcagctttatttaattccagttaacttttaaattcctcc
t

gaattccaggtaaaagtatttggttagcacaaactcaagtggagaattca
acaaccatgtcttaggaggttgcagtattctgaaatcatggacccagatc
taaggtgcttgcgtttttgcatgtttcaatgtctactggcctccatgttc
tccatgtgtcagaaccagcacttcatatagacgccaagtcatattcttgc
tgcgatagacaataattatttttccaggaaagttttgataaagcccaggt
atgaactttgactttttctgattggaggagaaactgcctcttgaaggttg
gatgaagaaagcatgctaagccagtaggataagaatgactggatagtagg
aatagctgacctactgacctacagtcatgttctgcttccatgtttaagaa
cactcatgttccctgatgtttggtggggctatatcttgacagattcatcc
gaagttgaaaatagatgtaatacattgacccccctcccccaaatgccatg
agttgacaagataatccactgtaatgcatggttgtatatcatcctggcta
agctggctcatgggacctgtgtctctctgctgccaccctgattcaccaga
ctaagtaatttactgtgtatcaccagcggtacaagaatgttaaaatccaa
agtccaaacaatggtttctatagaatattgattgctttcgcacaccacta
tgacatcataaaaatataagccaaaccattgtacattgagaactgtctgt
accagggtgaaacatgttccctcaccaaccctcattggaaccctggccat
aaagcagtatttccagaagaaaagggcttttctaagtggaaatgtctact
acaacacagacctcactgtttgagtccctgatttaatagcatggcgactc
tctgatgggactgatcagagatggcacctgcttgtggctttgaagggtca
gtgtcataattctgtcatgcataatctaagccatttttcagaaccatctt
agaactcctttcacttacacaggcagggcaaaactggtcctttaagttgt
ctattccaagtgtccccaggctcatctcaatccaagtcacattctttatt
tattttcattatgacaccacctcgaaggaccatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_55620080_55621243
seq2: B6Ng01-294M10.b_49_1199 (reverse)

seq1  AGGAGGAAGACAGGGAAAGAAGGATATTTTAAAAGTAAACCTGAAATTTA  50
                       || |||  | ||||||||| || ||| |||| |
seq2  -----------------AGGAGG--AATTTAAAAGTTAA-CTGGAATTAA  30

seq1  AATAAGCTGA-CCATGTACCAATTTCTACAAAGAA-CCAAAGGCTTTTGT  98
      |  ||||||| ||||||| || ||||||||||||| |||||||  |||||
seq2  ATAAAGCTGACCCATGTATCAGTTTCTACAAAGAACCCAAAGGGCTTTGT  80

seq1  --CTC-TCTTATTTGTGACCAGGC-TGTTCTCAACCATGGGAAAT-CCAA  143
        ||| |||||||   |||||||| |||||||||||||||||||| ||||
seq2  TCCTCTTCTTATTGTGGACCAGGCTTGTTCTCAACCATGGGAAATCCCAA  130

seq1  TACACCCATCAAGAGCACACACACTATGACCACCACCCTGTAGGGCAGGG  193
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  TACACCCATCAGAGGCACACACACTATGACCACCACCCTGTAGGGCAGGG  180

seq1  AGAGGGCCTCTTCATGTTGAACAATGAGTTGGGGGAACTGAGAGAGGCTC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCCTCTTCATGTTGAACAATGAGTTGGGGGAACTGAGAGAGGCTC  230

seq1  CGGGAGAAAAGGCAGAGGACCTTTTACCCCAGGTGCACTTTGTTCCTTGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGAAAAGGCAGAGGACCTTTTACCCCAGGTGCACTTTGTTCCTTGG  280

seq1  ACGGTTCTTGGTCATGATTTTCATGTCTCCCATGACAAACATTTATATTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTCTTGGTCATGATTTTCATGTCTCCCATGACAAACATTTATATTC  330

seq1  AATTTACAAGACAGGTTTATTCTCACTGGATGTCAGATCATTGTATAGAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACAAGACAGGTTTATTCTCACTGGATGTCAGATCATTGTATAGAA  380

seq1  CTCAATCTGGTGAGTATACCCTGAGTATATGGCCTTCTGCCTCGCTTTCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCTGGTGAGTATACCCTGAGTATATGGCCTTCTGCCTCGCTTTCA  430

seq1  TGCTTTCCCAGATATAATCTCTAGTATGGGCCAGACAGTTGTGTTTACAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCCAGATATAATCTCTAGTATGGGCCAGACAGTTGTGTTTACAT  480

seq1  TGGTCTCTCCTGAAAGGGCTCCTCTGTTAATATTTACATGGGCTTACTGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTCCTGAAAGGGCTCCTCTGTTAATATTTACATGGGCTTACTGA  530

seq1  CTGTGTTTCTTTACATGGTTTTCAGATTGTGTTTTTCTGAACTCAAACAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTCTTTACATGGTTTTCAGATTGTGTTTTTCTGAACTCAAACAG  580

seq1  CGTTCCTTGGACCACCGCTTTCTTCCTTACATGACTGTGTAAATGTACAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCTTGGACCACCGCTTTCTTCCTTACATGACTGTGTAAATGTACAG  630

seq1  TGAACCTGAAGTAAACTTCTTTCCAGCATCAGACTGTGTCCAGTCCCATT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTGAAGTAAACTTCTTTCCAGCATCAGACTGTGTCCAGTCCCATT  680

seq1  CTGTCAGGCCCTCGGATCCCAGGTCCCCCTGTTTAAGTCGTCTGAAAGGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGGCCCTCGGATCCCAGGTCCCCCTGTTTAAGTCGTCTGAAAGGC  730

seq1  ACCATTAGCTTTGCTTCCATAGGATTCAGCTCTTTGGGAGACTTTCCCTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAGCTTTGCTTCCATAGGATTCAGCTCTTTGGGAGACTTTCCCTT  780

seq1  CTCTCTTAAAATGTCTTCATAATCACCTTTCTGTCTCTTGTCTCTTTCAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTAAAATGTCTTCATAATCACCTTTCTGTCTCTTGTCTCTTTCAA  830

seq1  GCTACAAGGAAGGGATCTGGAACTGCTGCCTGGTTTGGGAGGAGCTTAGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAAGGAAGGGATCTGGAACTGCTGCCTGGTTTGGGAGGAGCTTAGT  880

seq1  GCCATGGGAGGGATGGAGCTAACACAAACAAGACCCACCAGTGAGGAACC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGGAGGGATGGAGCTAACACAAACAAGACCCACCAGTGAGGAACC  930

seq1  AGGGTCTTCTACTCTGGGAAGGGGTCCTTTTCTCTGTATTGGACGTCTCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTTCTACTCTGGGAAGGGGTCCTTTTCTCTGTATTGGACGTCTCT  980

seq1  GCTCTTGGGATTTAAGAATCAATACCAAGGACAAGAGACAGGTGGAATCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGGGATTTAAGAATCAATACCAAGGACAAGAGACAGGTGGAATCT  1030

seq1  ACCTTTCTTTGAAGAGACAAGAAAGGATCTGGGTTCCTGAAACTGAGAGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTTTGAAGAGACAAGAAAGGATCTGGGTTCCTGAAACTGAGAGT  1080

seq1  TCAGTCACTGAGAGGTAGCAAGAACCCTTCAGAATTGTCTAAGTACCGTG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACTGAGAGGTAGCAAGAACCCTTCAGAATTGTCTAAGTACCGTG  1130

seq1  GAATGCAGGCTTCCAGAATTC  1164
      |||||||||||||||||||||
seq2  GAATGCAGGCTTCCAGAATTC  1151


seq1: chr18_55501851_55502981
seq2: B6Ng01-294M10.g_65_1200

seq1  GAATTCCAGGTAAAAGTATTTGGTTAGCACAAACTCAAGTGGAGAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTAAAAGTATTTGGTTAGCACAAACTCAAGTGGAGAATTCA  50

seq1  ACAACCATGTCTTAGGAGGTTGCAGTATTCTGAAATCATGGACCCAGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATGTCTTAGGAGGTTGCAGTATTCTGAAATCATGGACCCAGATC  100

seq1  TAAGGTGCTTGCGTTTTTGCATGTTTCAATGTCTACTGGCCTCCATGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGCTTGCGTTTTTGCATGTTTCAATGTCTACTGGCCTCCATGTTC  150

seq1  TCCATGTGTCAGAACCAGCACTTCATATAGACGCCAAGTCATATTCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTGTCAGAACCAGCACTTCATATAGACGCCAAGTCATATTCTTGC  200

seq1  TGCGATAGACAATAATTATTTTTCCAGGAAAGTTTTGATAAAGCCCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATAGACAATAATTATTTTTCCAGGAAAGTTTTGATAAAGCCCAGGT  250

seq1  ATGAACTTTGACTTTTTCTGATTGGAGGAGAAACTGCCTCTTGAAGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTTGACTTTTTCTGATTGGAGGAGAAACTGCCTCTTGAAGGTTG  300

seq1  GATGAAGAAAGCATGCTAAGCCAGTAGGATAAGAATGACTGGATAGTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAAAGCATGCTAAGCCAGTAGGATAAGAATGACTGGATAGTAGG  350

seq1  AATAGCTGACCTACTGACCTACAGTCATGTTCTGCTTCCATGTTTAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTGACCTACTGACCTACAGTCATGTTCTGCTTCCATGTTTAAGAA  400

seq1  CACTCATGTTCCCTGATGTTTGGTGGGGCTATATCTTGACAGATTCATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATGTTCCCTGATGTTTGGTGGGGCTATATCTTGACAGATTCATCC  450

seq1  GAAGTTGAAAATAGATGTAATACATTGACCCCCCTCCCCCAAATGCCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGAAAATAGATGTAATACATTGACCCCCCTCCCCCAAATGCCATG  500

seq1  AGTTGACAAGATAATCCACTGTAATGCATGGTTGTATATCATCCTGGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACAAGATAATCCACTGTAATGCATGGTTGTATATCATCCTGGCTA  550

seq1  AGCTGGCTCATGGGACCTGTGTCTCTCTGCTGCCACCCTGATTCACCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTCATGGGACCTGTGTCTCTCTGCTGCCACCCTGATTCACCAGA  600

seq1  CTAAGTAATTTACTGTGTATCACCAGCGGTACAAGAATGTTAAAATCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTAATTTACTGTGTATCACCAGCGGTACAAGAATGTTAAAATCCAA  650

seq1  AGTCCAAACAATGGTTTCTATAGAATATTGATTGCTTTCGCACACCACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAACAATGGTTTCTATAGAATATTGATTGCTTTCGCACACCACTA  700

seq1  TGACATCATAAAAATATAAGCCAAACCATTGTACATTGAGAACTGTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCATAAAAATATAAGCCAAACCATTGTACATTGAGAACTGTCTGT  750

seq1  ACCAGGGTGAAACATGTTCCCTCACCAACCCTCATTGGAACCCTGGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGTGAAACATGTTCCCTCACCAACCCTCATTGGAACCCTGGCCAT  800

seq1  AAAGCAGTATTTCCAGAAGAAAAGGGCTTTTCTAAGTGGAAATGTCTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGTATTTCCAGAAGAAAAGGGCTTTTCTAAGTGGAAATGTCTACT  850

seq1  ACAACACAGACCTCACTGTTTGAGTCCCTGATTTAATAGCATGGCGACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACAGACCTCACTGTTTGAGTCCCTGATTTAATAGCATGGCGACTC  900

seq1  TCTGATGGGACTGATCAGAGATGGCACCTGCTTGTGGCTTTGAAGGGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGGGACTGATCAGAGATGGCACCTGCTTGTGGCTTTGAAGGGTCA  950

seq1  GTGTCATAATTCTGTCATGCATAATCTAAAGCCATTTTTCAGAACAATCT  1000
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  GTGTCATAATTCTGTCATGCATAATCT-AAGCCATTTTTCAGAACCATCT  999

seq1  TAGAACTCC-TTCACTTACACAAGCAGGCAAAAACTGGTCCTTTAAGTTG  1049
      ||||||||| |||||||||||| |||||  ||||||||||||||||||||
seq2  TAGAACTCCTTTCACTTACACAGGCAGGGCAAAACTGGTCCTTTAAGTTG  1049

seq1  TCTATT-CAAGTGTCCCCA-GCTCATTCTC-ATCAAAGTCACATTC-TTA  1095
      |||||| |||||||||||| ||||| |||| ||| ||||||||||| |||
seq2  TCTATTCCAAGTGTCCCCAGGCTCA-TCTCAATCCAAGTCACATTCTTTA  1098

seq1  TTTA-TTTCATTATGGACAC--ACTCGAGGGACCATGCA  1131
      |||| ||||||||| |||||   ||||| ||||||||||
seq2  TTTATTTTCATTAT-GACACCACCTCGAAGGACCATGCA  1136


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