BAC Information

Click to search

BAC

Clone NameB6Ng01-295F19
Chromosome18 (Build37)
Map Location 44,428,723 - 44,565,291
singlet/doubletdoublet
Overlap geneNpy6r, Myot, Dcp2
Upstream geneStk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11
Downstream geneMcc, LOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295F19.bB6Ng01-295F19.g
ACCGA091244GA091245
length1,1731,144
definitionB6Ng01-295F19.b B6Ng01-295F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,564,131 - 44,565,291)(44,428,723 - 44,429,873)
sequence
gaattcatttaaaattttttgaactagcagcagtgaggccagttttacag
tttaagaaatgaacatacctgataaagggaatggccataaaaaacttatt
aggtgccaagccaagcttggacttgggagtcatgtcatttctatgacagg
gcaatttctcaatggagaaccactcaatattctgaaacaaaacaagtgca
tgcagttgattactatcaaaggttagctaaccccaactccacagcaacct
ataaatattctccactcttacataccctaatttctcttctggttttgggg
ttaaattttgtgtcttttgggactcctggaatgatgtacaagcgagcaag
ctggtcattgattcgcagttcaatgtaatcatccttacaaatatagtctt
ttatatcaaaaccagtttcctcgaagacctggaaataaatgttgatacaa
tgtttgatttttaatcattagttacatagttgagacttgtatcaaaacaa
agcaaagatatcaagctaaatctaatctgtagctagataattaggaccaa
gccccttcttatgctaatacaagtaaaaattaaaccgatcgaatggagac
aagctataagcaaaggatgaataccaatctgctagtctgctttaagacag
agctttcctattgtattgtatgtagtaccaccaagtggtagaaggactgg
ctgcaactttagaactcttagtcaaattcactcaaaaaggcaaccgaagg
acctcaaccttaaccattcctaggttgaaaccattgtgactggatgaggg
gtggggcaggtagaggtaattaagtgtaaatgcctagaatccctgatctt
gtttaagaaaagaccctcgcagttccctggacatgggacagggaaagccc
atgtggacatgcaggcagttgcaaactggattccaataagtcgaagaaga
tagcctgcaatgaaactcaattagccgtagcctcaagcctgaatccctac
tcctccagaatctgccaagaagtaaccttctgtagttcaagctacccagt
cagcctgtggtgattaagtcagctagaagcacaacttaacagtagcattt
ccagctcactccccaaaactgtaagctctttattgacaaagtgaatcatt
aggaatcaggataaaactcaagg
gaattctcactggtagcttcacctatcaacagagcatcatattttgtgca
tactagtggccacgtattatttgtgaaatactgtaagttccctagtagct
aaaaaggttcattgttaggatctgatgtagattagactgaatcttgaaca
gaatgccaatcttcaggaaagaatatctgataaaaaattaagaaagaaat
ttgtgagtcataaaacctattagccattatagtccagatctaacttattt
tttcttatgccctctgtagtgatataacatttacttgtgacatttaatag
gactactaaacctagacttaaaataatcaatagcacagtttgacctaaca
aagtgaacagatgaaggggacatgtgttttaaataaccaaaatttgaata
aggaatagtctcctaatgatatttcaagtataaaccattttcagtgccta
ctttcatttagagcaataggcaatcaattgttactttcaaagtcatgttt
aaaaattgcatttctatctggcatagtggtacacacctgtaatctcggtc
tttagcaggtggaagcaggatcatgattcgaaactcatccacgattacac
aacttcaaggccagccaaggctacatgatgctcaaaaaaaaaccctttta
atttatctttttctaagaaattcaatgttaatttcaattcttagaacatt
ttattagttataaattatggcacaatatagataaaatccatctattgagt
aaaagaaaaatgtctacaactagctactaatgtatactaataattttcca
gggacttataaattaactttaagaattttacaaagctactcttgtttgaa
aagcgtcactatatatgccagaaaatgctagtttcccagacgcattttta
tcatctctgcagacactagaaagtggcatttgtgacattttttttcacat
tgcttaagcagctgtagctatgcttcactgctgccaggtcctgactcctc
ccttcatgctcgcagtggccttcagcacccactgatcacagattccaacc
ttctcttgcctagatagtgactcaactccaggaatagctctgaagtgagc
ctacgataaatcatcaggcaagaatgaggtattggaaacttgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44564131_44565291
seq2: B6Ng01-295F19.b_47_1219 (reverse)

seq1  CCTTGATTTTTAATCCTGATTTCTAAATGATCACCTTTGTC-ATAAAGAG  49
      |||||| |||| ||||||||| || ||||||   ||||||| ||||||||
seq2  CCTTGAGTTTT-ATCCTGATTCCT-AATGATTCACTTTGTCAATAAAGAG  48

seq1  CTAAAAG-TTTGGGGAGTTGGCTGG-AATGCTACTGTTA--GTGTGC-TC  94
      || | || ||||||||||  ||||| |||||||||||||   ||||| ||
seq2  CTTACAGTTTTGGGGAGTGAGCTGGAAATGCTACTGTTAAGTTGTGCTTC  98

seq1  TAGCTGACTTAATCA-CACA-GCTGACTGGGTAGCTTGAACTACAGAAGT  142
      ||||||||||||||| |||| |||||||||||||||||||||||||||| 
seq2  TAGCTGACTTAATCACCACAGGCTGACTGGGTAGCTTGAACTACAGAAGG  148

seq1  TTACTTCTTGGCAGA-TCTGGA-GAGTAGGGATTCAGGCTTGAGGCTACG  190
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  TTACTTCTTGGCAGATTCTGGAGGAGTAGGGATTCAGGCTTGAGGCTACG  198

seq1  GCTAATTGAGTTTCATTGCAGGCTATCTTC-TCGACTTATTGGAATCCAG  239
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCTAATTGAGTTTCATTGCAGGCTATCTTCTTCGACTTATTGGAATCCAG  248

seq1  TTTGCAACTGCCTGCATGTCCACATGGGCTTT-CCTGT-CCATGTCCAGG  287
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  TTTGCAACTGCCTGCATGTCCACATGGGCTTTCCCTGTCCCATGTCCAGG  298

seq1  GAACTGCGAGGGTCTTTTCTTAAACAAGATCA-GGATTCTAGGCATTTAC  336
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAACTGCGAGGGTCTTTTCTTAAACAAGATCAGGGATTCTAGGCATTTAC  348

seq1  ACTTAATTACCTCTACCTGCCCCACCCCTCATCCAGTCACAATGGTTTCA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTACCTCTACCTGCCCCACCCCTCATCCAGTCACAATGGTTTCA  398

seq1  ACCTAGGAATGGTTAAGGTTGAGGTCCTTCGGTTGCCTTTTTGAGTGAAT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGAATGGTTAAGGTTGAGGTCCTTCGGTTGCCTTTTTGAGTGAAT  448

seq1  TTGACTAAGAGTTCTAAAGTTGCAGCCAGTCCTTCTACCACTTGGTGGTA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTAAGAGTTCTAAAGTTGCAGCCAGTCCTTCTACCACTTGGTGGTA  498

seq1  CTACATACAATACAATAGGAAAGCTCTGTCTTAAAGCAGACTAGCAGATT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATACAATACAATAGGAAAGCTCTGTCTTAAAGCAGACTAGCAGATT  548

seq1  GGTATTCATCCTTTGCTTATAGCTTGTCTCCATTCGATCGGTTTAATTTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCATCCTTTGCTTATAGCTTGTCTCCATTCGATCGGTTTAATTTT  598

seq1  TACTTGTATTAGCATAAGAAGGGGCTTGGTCCTAATTATCTAGCTACAGA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTATTAGCATAAGAAGGGGCTTGGTCCTAATTATCTAGCTACAGA  648

seq1  TTAGATTTAGCTTGATATCTTTGCTTTGTTTTGATACAAGTCTCAACTAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTAGCTTGATATCTTTGCTTTGTTTTGATACAAGTCTCAACTAT  698

seq1  GTAACTAATGATTAAAAATCAAACATTGTATCAACATTTATTTCCAGGTC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTAATGATTAAAAATCAAACATTGTATCAACATTTATTTCCAGGTC  748

seq1  TTCGAGGAAACTGGTTTTGATATAAAAGACTATATTTGTAAGGATGATTA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGAAACTGGTTTTGATATAAAAGACTATATTTGTAAGGATGATTA  798

seq1  CATTGAACTGCGAATCAATGACCAGCTTGCTCGCTTGTACATCATTCCAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAACTGCGAATCAATGACCAGCTTGCTCGCTTGTACATCATTCCAG  848

seq1  GAGTCCCAAAAGACACAAAATTTAACCCCAAAACCAGAAGAGAAATTAGG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCAAAAGACACAAAATTTAACCCCAAAACCAGAAGAGAAATTAGG  898

seq1  GTATGTAAGAGTGGAGAATATTTATAGGTTGCTGTGGAGTTGGGGTTAGC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAAGAGTGGAGAATATTTATAGGTTGCTGTGGAGTTGGGGTTAGC  948

seq1  TAACCTTTGATAGTAATCAACTGCATGCACTTGTTTTGTTTCAGAATATT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTTGATAGTAATCAACTGCATGCACTTGTTTTGTTTCAGAATATT  998

seq1  GAGTGGTTCTCCATTGAGAAATTGCCCTGTCATAGAAATGACATGACTCC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTTCTCCATTGAGAAATTGCCCTGTCATAGAAATGACATGACTCC  1048

seq1  CAAGTCCAAGCTTGGCTTGGCACCTAATAAGTTTTTTATGGCCATTCCCT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCAAGCTTGGCTTGGCACCTAATAAGTTTTTTATGGCCATTCCCT  1098

seq1  TTATCAGGTATGTTCATTTCTTAAACTGTAAAACTGGCCTCACTGCTGCT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGGTATGTTCATTTCTTAAACTGTAAAACTGGCCTCACTGCTGCT  1148

seq1  AGTTCAAAAAATTTTAAATGAATTC  1161
      |||||||||||||||||||||||||
seq2  AGTTCAAAAAATTTTAAATGAATTC  1173

seq1: chr18_44428723_44429873
seq2: B6Ng01-295F19.g_70_1213

seq1  GAATTCTCACTGGTAGCTTCACCTATCAACAGAGCATCATATTTTGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTGGTAGCTTCACCTATCAACAGAGCATCATATTTTGTGCA  50

seq1  TACTAGTGGCCACGTATTATTTGTGAAATACTGTAAGTTCCCTAGTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTGGCCACGTATTATTTGTGAAATACTGTAAGTTCCCTAGTAGCT  100

seq1  AAAAAGGTTCATTGTTAGGATCTGATGTAGATTAGACTGAATCTTGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGTTCATTGTTAGGATCTGATGTAGATTAGACTGAATCTTGAACA  150

seq1  GAATGCCAATCTTCAGGAAAGAATATCTGATAAAAAATTAAGAAAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCAATCTTCAGGAAAGAATATCTGATAAAAAATTAAGAAAGAAAT  200

seq1  TTGTGAGTCATAAAACCTATTAGCCATTATAGTCCAGATCTAACTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTCATAAAACCTATTAGCCATTATAGTCCAGATCTAACTTATTT  250

seq1  TTTCTTATGCCCTCTGTAGTGATATAACATTTACTTGTGACATTTAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATGCCCTCTGTAGTGATATAACATTTACTTGTGACATTTAATAG  300

seq1  GACTACTAAACCTAGACTTAAAATAATCAATAGCACAGTTTGACCTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTAAACCTAGACTTAAAATAATCAATAGCACAGTTTGACCTAACA  350

seq1  AAGTGAACAGATGAAGGGGACATGTGTTTTAAATAACCAAAATTTGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAACAGATGAAGGGGACATGTGTTTTAAATAACCAAAATTTGAATA  400

seq1  AGGAATAGTCTCCTAATGATATTTCAAGTATAAACCATTTTCAGTGCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAGTCTCCTAATGATATTTCAAGTATAAACCATTTTCAGTGCCTA  450

seq1  CTTTCATTTAGAGCAATAGGCAATCAATTGTTACTTTCAAAGTCATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTTAGAGCAATAGGCAATCAATTGTTACTTTCAAAGTCATGTTT  500

seq1  AAAAATTGCATTTCTATCTGGCATAGTGGTACACACCTGTAATCTCGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGCATTTCTATCTGGCATAGTGGTACACACCTGTAATCTCGGTC  550

seq1  TTTAGCAGGTGGAAGCAGGATCATGATTCGAAACTCATCCACGATTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAGGTGGAAGCAGGATCATGATTCGAAACTCATCCACGATTACAC  600

seq1  AACTTCAAGGCCAGCCAAGGCTACATGATGCTCAAAAAAAAACCCTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAAGGCCAGCCAAGGCTACATGATGCTCAAAAAAAAACCCTTTTA  650

seq1  ATTTATCTTTTTCTAAGAAATTCAATGTTAATTTCAATTCTTAGAACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTTTTTCTAAGAAATTCAATGTTAATTTCAATTCTTAGAACATT  700

seq1  TTATTAGTTATAAATTATGGCACAATATAGATAAAATCCATCTATTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTTATAAATTATGGCACAATATAGATAAAATCCATCTATTGAGT  750

seq1  AAAAGAAAAATGTCTACAACTAGCTACTAATGTATACTAATAATTTTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAATGTCTACAACTAGCTACTAATGTATACTAATAATTTTCCA  800

seq1  GGGACTTATAAATTAACTTTAAGAATTTTACAAAGCTACTCTTGTTTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTATAAATTAACTTTAAGAATTTTACAAAGCTACTCTTGTTTGAA  850

seq1  AAGCGTCACTATATATGCCAGAAAATGCTAGTTTCCCAGACGCATTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTCACTATATATGCCAGAAAATGCTAGTTTCCCAGACGCATTTTTA  900

seq1  TCATCTCTGCAGACACTAGAAAGTGGCATTTGTGACA-TTTTTTTCACAT  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCATCTCTGCAGACACTAGAAAGTGGCATTTGTGACATTTTTTTTCACAT  950

seq1  TGCTTAAGCAGCTGTAGCTATGCTTCACTGCTGCCAAGGTCCTGACTCCT  999
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGCTTAAGCAGCTGTAGCTATGCTTCACTGCTGCC-AGGTCCTGACTCCT  999

seq1  CCCTTCATGCTCCGCAGTGGCCTTCAGCACCCACTGGATCACAGAATTCC  1049
      ||||||||||| ||||||||||||||||||||||| |||||||| |||||
seq2  CCCTTCATGCT-CGCAGTGGCCTTCAGCACCCACT-GATCACAG-ATTCC  1046

seq1  AA-CTTCTC-TGCCTAGATAGTGACTCCAACTCCAGGGAATAGCTTCTGA  1097
      || |||||| |||||||||||||||| |||||||| |||||||| |||||
seq2  AACCTTCTCTTGCCTAGATAGTGACT-CAACTCCA-GGAATAGC-TCTGA  1093

seq1  AGTGAAGCTACGATAAATACATCAGGGCAGGAAAAAGAAGTATTGG-AAC  1146
      |||||  ||||||||||| |||||||  ||   || || ||||||| |||
seq2  AGTGAGCCTACGATAAAT-CATCAGGCAAG---AATGAGGTATTGGAAAC  1139

seq1  TTGGA  1151
      |||||
seq2  TTGGA  1144