BAC Information

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BAC

Clone NameB6Ng01-295I14
Chromosome18 (Build37)2 (Build37)
Map Location 52,689,993 - 52,690,96497,721,173 - 97,721,321
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG240289, Ftmt, Srfbp1, Lox
Downstream geneZfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295I14.bB6Ng01-295I14.g
ACCGA091376GA091377
length987992
definitionB6Ng01-295I14.b B6Ng01-295I14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(52,689,993 - 52,690,964)(97,721,173 - 97,721,321)
sequence
gaattctttcatccctactgtgtaccagagagccagaagggcaaggcagt
actcagaggctccttcaagtagaccgtttatctgacttcttgctttttct
ttttgcctaataaggaggtttggctttacattttaaaatcaaattaccga
tgttaaatattgaaattcaataacgcattcggcagctttttaattcatct
tccaatctaaacaaaggtgtcgcaagagaaaacgccttggagttcagagt
ttagtacaaagaaggcagtgggtgtggccaggaggctgagtaggaggatg
gtctgcaactggagagagatgcttaatagagcagctgttcacatcctact
cagggtctgggaagttctggaccaaattcaaagaaaaaaaaaagtactaa
gtggtctgatttgaactactaggcagtgccagactttagtacctatttta
ttggtcccatcattgagctgtggtctagacacacttaatattcacctctt
cccctctgtctttccataactgatcaccccatgaggtagagtggtggaca
tctgctggtttgattgcttcctatccttttcccttttctctctctctctc
tctctctctctctctctctctctctctctctctctcgctttgtttttgta
tttatgttttgtttaattcgaccaggaacgcccgactgctagtagtgtgg
ttaagactgacgaggcgttaatgggatttcttcatttcatgatctggtca
tgagatcttatttaaacttttcatccaagaatctgaatgtttaggtggga
cacatgggtcaaaaacatttcctcctcccactgctaggaaaagtctgtga
gtctttattttttttcctatcagactttctagtgcattccttttgtagat
taatattgtcagctccggtcttctgcaagggaagaatcccagtttgacca
tagacggttgggcctgcctactctcaactaaggtaaa

gaattctttatttagctctgttcccatttttaaaaataggttatttggct
ttctggagtccaacttcttgagttctatatatattggatattagccccct
ttcagatttaggattgataaaaatcttttctgaatatgttggtggccttt
ttgtcttattaacagtgtcctttgccttacagaagctttgcaattttatg
aggtcccatttgttgattcttgatcttttacagcacaagccattggtgtt
ctgtttaggaattttcccccagtacccatacctttgaggctctttcccac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttagacatgagctttgtacaaggacataagaatggatcaattcgc
attcttctacatgataactgccagttgagccagcaccatttgttgaaaat
gctgtcttgtttttccactgggtggttttgcctcctttgtcaaagaccaa
gtgaccataggtgtgggggttcatttctgggtcttcaattctattccttt
gatctacctgtctgtcgatataccagtaccatgcagtttatatcacaatt
gtctgtagtacatcttgaggttggggatggtgattccaccagagattctt
ttattattgagaatagtttttgctatcctaagtttttttgttattccaga
tgaatttgcaaattgccctttctaactcagtgaagaattgagttggaatt
ttgatggggattgcattgaatctgtagattgctttcagcaagatagccat
ttttttctatattaatcctgccaattgatgagcatgggagatctttccat
cttctgatgtggggagctgccctcacattcgcctgatttttttcaagact
tttcccatgaaatgggtgtttgaattttgtcaatgatttgtcagcatcct
aatgagatgatcatgtggtttttgtcttttgaatttgtttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_52689993_52690964
seq2: B6Ng01-295I14.b_47_1033

seq1  GAATTCTTTCATCCCTACTGTGTACCAGAGAGCCAGAAGGGCAAGGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATCCCTACTGTGTACCAGAGAGCCAGAAGGGCAAGGCAGT  50

seq1  ACTCAGAGGCTCCTTCAAGTAGACCGTTTATCTGACTTCTTGCTTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGGCTCCTTCAAGTAGACCGTTTATCTGACTTCTTGCTTTTTCT  100

seq1  TTTTGCCTAATAAGGAGGTTTGGCTTTACATTTTAAAATCAAATTACCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTAATAAGGAGGTTTGGCTTTACATTTTAAAATCAAATTACCGA  150

seq1  TGTTAAATATTGAAATTCAATAACGCATTCGGCAGCTTTTTAATTCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATATTGAAATTCAATAACGCATTCGGCAGCTTTTTAATTCATCT  200

seq1  TCCAATCTAAACAAAGGTGTCGCAAGAGAAAACGCCTTGGAGTTCAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCTAAACAAAGGTGTCGCAAGAGAAAACGCCTTGGAGTTCAGAGT  250

seq1  TTAGTACAAAGAAGGCAGTGGGTGTGGCCAGGAGGCTGAGTAGGAGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACAAAGAAGGCAGTGGGTGTGGCCAGGAGGCTGAGTAGGAGGATG  300

seq1  GTCTGCAACTGGAGAGAGATGCTTAATAGAGCAGCTGTTCACATCCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCAACTGGAGAGAGATGCTTAATAGAGCAGCTGTTCACATCCTACT  350

seq1  CAGGGTCTGGGAAGTTCTGGACCAAATTCAAAGAAAAAAAAAAGTACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTGGGAAGTTCTGGACCAAATTCAAAGAAAAAAAAAAGTACTAA  400

seq1  GTGGTCTGATTTGAACTACTAGGCAGTGCCAGACTTTAGTACCTATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTGATTTGAACTACTAGGCAGTGCCAGACTTTAGTACCTATTTTA  450

seq1  TTGGTCCCATCATTGAGCTGTGGTCTAGACACACTTAATATTCACCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCCATCATTGAGCTGTGGTCTAGACACACTTAATATTCACCTCTT  500

seq1  CCCCTCTGTCTTTCCATAACTGATCACCCCATGAGGTAGAGTGGTGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTGTCTTTCCATAACTGATCACCCCATGAGGTAGAGTGGTGGACA  550

seq1  TCTGCTGGTTTGATTGCTTCCTATCCTTTTCCCTTTTCTCTCTCTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGTTTGATTGCTTCCTATCCTTTTCCCTTTTCTCTCTCTCTCTC  600

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGTTTTGTTTTTGTT  650
      ||||||||||||||||||||||||||||||||| | | ||||||||||| 
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTTTGTTTTTGTA  650

seq1  TTTTTGTTTTGTTTAATTCTACCTGGAACCCCCGACCCCTAGTAGTGTGG  700
      ||| ||||||||||||||| ||| ||||| ||||||  ||||||||||||
seq2  TTTATGTTTTGTTTAATTCGACCAGGAACGCCCGACTGCTAGTAGTGTGG  700

seq1  TT-AGACTGACGAGGCGTTAATGGGATTTCTTCAATTCAGGAACTGGTCA  749
      || ||||||||||||||||||||||||||||||| |||| || |||||||
seq2  TTAAGACTGACGAGGCGTTAATGGGATTTCTTCATTTCATGATCTGGTCA  750

seq1  TGAGA-CTTAATTAAAC-TATCATCCTAGAATCTGAATGTTAAGGT-GGT  796
      ||||| |||| |||||| | |||||| |||||||||||||| |||| || 
seq2  TGAGATCTTATTTAAACTTTTCATCCAAGAATCTGAATGTTTAGGTGGGA  800

seq1  CACAT-GGTCAAAAAC-GTTCCTCCTCCCACTGCTAGGAAAAGTCT-TGA  843
      ||||| ||||||||||  |||||||||||||||||||||||||||| |||
seq2  CACATGGGTCAAAAACATTTCCTCCTCCCACTGCTAGGAAAAGTCTGTGA  850

seq1  GTCTTTA-GCTTTTTCCT-TCAGACTTTCTAGTGCATT-CTTTTGTGGAT  890
      |||||||   |||||||| ||||||||||||||||||| ||||||| |||
seq2  GTCTTTATTTTTTTTCCTATCAGACTTTCTAGTGCATTCCTTTTGTAGAT  900

seq1  TAATATTGTCAGTTTCTGTCTTCTGCCAAGGAAGAAT-CCTGTTTGA-CA  938
      |||||||||||| | | ||||||||| | |||||||| || |||||| ||
seq2  TAATATTGTCAGCTCCGGTCTTCTGCAAGGGAAGAATCCCAGTTTGACCA  950

seq1  TAGA-GGGTGGGGCTG-CTTCTCTCAGCT-AGGTAAA  972
      |||| || |||| ||| || |||||| || |||||||
seq2  TAGACGGTTGGGCCTGCCTACTCTCAACTAAGGTAAA  987


seq1: chr2_97721173_97721321
seq2: B6Ng01-295I14.g_839_1059 (reverse)

seq1  ATAAACAAACTC-AAAGACAAAAACCACATGATCATCTCATTA-GAAGCA  48
      ||||||||| || |||||||||||||||||||||||||||||| || || 
seq2  ATAAACAAATTCAAAAGACAAAAACCACATGATCATCTCATTAGGATGCT  50

seq1  GAGAAAGCATTTGACAAAA-TCCAACACCTA-TTCATGATAAAAGTC-TG  95
      || ||| || ||||||||| || |||||| | ||||||  ||||||| ||
seq2  GACAAATCA-TTGACAAAATTCAAACACCCATTTCATGGGAAAAGTCTTG  99

seq1  GGAAAGATCAG--GAATTCAAGG-------CCCATACCTAAACATG----  132
        ||| |||||  ||||   |||       |||| | |  || |||    
seq2  AAAAAAATCAGGCGAATGTGAGGGCAGCTCCCCACATCAGAAGATGGAAA  149

seq1  ---------------------------------ATA--------------  135
                                       |||              
seq2  GATCTCCCATGCTCATCAATTGGCAGGATTAATATAGAAAAAAATGGCTA  199

seq1  --------AAAGCAATCTACAG  149
              ||||||||||||||
seq2  TCTTGCTGAAAGCAATCTACAG  221


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