BAC Information

Click to search

BAC

Clone NameB6Ng01-295K12
Chromosome18 (Build37)9 (Build37)
Map Location 26,315,484 - 26,315,96816,580,093 - 16,581,236
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene5730494M16Rik, AW554918, Brunol4, LOC100041241, LOC665916, LOC100041263, LOC100041274
Downstream geneEG665977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295K12.bB6Ng01-295K12.g
ACCGA091468GA091469
length1,1671,139
definitionB6Ng01-295K12.b B6Ng01-295K12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,315,484 - 26,315,968)(16,580,093 - 16,581,236)
sequence
gaattctgcattattccctgatgctgatgtgatgcctggcttgtagttct
atgttcagaagtaaatcgcagtttaaacaagctatggccattatttatca
cctcctttgtcatccttctttttccttcatggtctctcccagaagtgaca
ccagcatcttcaaatgatcactggtgacaataagccacctcattttagga
gctggctctgtgtttcatgtcagtctgttgactgcaataaagaagattta
caacaaggtaagcactctacctgtgttctcgaagcccagtgcttagacat
tctcaattcttcaaaattttgtttctgtatttgtaacctcactgaagcat
atgttaatttcattaaagtaggcattttgtagcaagagtacttatctgtt
ttaatcattcttagtttggaaggaagtatttaagtacacaaattttccct
tttctaaagaaatcaagtcgactcgagccccgggctaccttgccagcaga
gtcttgcccaacacccgcaagggcccacacgggaccccccacgggatcct
aagacctctggtgagtggaacacagcgcctgccccaatccaatcgcgcgg
aacctgagaatgctgtacatagggaagcaggctacccaggcctgatctgg
ggcacaagtcccttctgctcgactcgagccccgggctaccttgccagcag
agtcgtgcccaacacccgcaagggcccacatgggaccccccacgggatcc
taagacctctggtgagtggaacacagcgcctgccccaatccaattgtgct
gaacctgagactgaggtacatagggaagcaggctacccgggcctgatctg
gggcaaaagccccttcagctccactcgagccccgagctaccttgccagca
gagtcttgcccaacacccgcaagggcgcacacgggactccccacgggatc
ctaagacctctggtgagtgaacacagcgcctgccccaaatccaatcgtgc
ggaacctgagactgagtacatagggaagcagctaccggccctgatctggg
gcacaagtccttccgctcgactcgagcccgagctaccttgcagcagagtt
cgtgccaacacccggcaggcccaccacgggactcccacgaatctagactc
tgatgagttgaacacaa

gaattcatgaaataaagaagaatttcttatgtaaatgtgagacatttgta
aaattttcacagatttgggtcacattgccctcataaaacttgaaggtaaa
gggttctgttttcatgaaagtttgtttattaaacaactgtaaatgtttca
tttttcaaagaaagaatcttctcttgggaaaggtatttgccacaccattc
ctcttaccacacagcagctgagcctggtgccattaaccaagtcatcagag
ccacaaattatgcattaaaacctagtaaaaaattgtcttagcaaaaatag
gtgtggctttcagaagcttaaataagttaccatctatggtagacatcatt
taaagttcactctttatcaagttccttatatgtgtttcataaattcacta
tgcagaccctatagtaagagaggactaaataaaaattccattttttctat
ttgccagacataatattacaacttattttctcagttcattcaatgagaat
aacatcaccttcctttcaggccaattttcatgatgaaatgagatagttta
tgtaaaaatatttgtgtgtagattttaatcaattttttttgtttttacaa
atctgttttaaacatgttgataaactttaaaatagtgatgagtttttaga
tgtctgcttattcagtcatttgacctgaagcatttatcttgtattataga
tagctgcattgctctaataatccagtttctgagtccctagacaagtgaaa
tcgaatacaaactgacagaaccatttgatgtttatgcatatgagaaaaac
acacacgggatgaaagacagtatcttaaaaaatgatcttgtgaaaactgg
gtatctacaggtagaagaatgggaattagatacctaattttactctgtat
ataaatcaacccaacatgaatcaaagactttatactaaaacccagaagtt
gggaaattactagaggaaagatttaaaaaaaaaaaaaaaaggaaagtcaa
gatatagatagaggggagggagttcttaagctctatggccacatgaaaaa
aaaaaatccctaagtactgtctaaatgaaaaccttctatacagccatgga
gatacagagtgatagtagactacgatgatagaaattctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_26315484_26315968
seq2: B6Ng01-295K12.b_543_1212 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TTGTGTTCAACTCATCAGAGTCTAGATTCGTGGGAGTCCCGTGGTGGGCC  50

seq1  --------------------------------------------------  0
                                                        
seq2  TGCCGGGTGTTGGCACGAACTCTGCTGCAAGGTAGCTCGGGCTCGAGTCG  100

seq1  --------------------------------------------------  0
                                                        
seq2  AGCGGAAGGACTTGTGCCCCAGATCAGGGCCGGTAGCTGCTTCCCTATGT  150

seq1  -----------------------------------------TTGTGTTCC  9
                                                |||||| |
seq2  ACTCAGTCTCAGGTTCCGCACGATTGGATTTGGGGCAGGCGCTGTGTT-C  199

seq1  ACTCACTAGAGGTCTTAGGATCACATGTGGAATCCTGTGTGGGCCCTTGC  59
      |||||| ||||||||||||||| | || ||| ||| ||||| ||||||||
seq2  ACTCACCAGAGGTCTTAGGATCCCGTGGGGAGTCCCGTGTGCGCCCTTGC  249

seq1  GGGTGTCAGGC--GACTCAGCTGGCAAGGTAGCCCAGGGCTCGAGTGGAG  107
      ||||||  |||  ||||| |||||||||||||| | ||||||||||||||
seq2  GGGTGTTGGGCAAGACTCTGCTGGCAAGGTAGCTCGGGGCTCGAGTGGAG  299

seq1  TGGAAGGGGTTTGTGCCCCAGATCAAGCCCGGGTAGCCTGCTTCCCTATG  157
        ||||||| || |||||||||||| ||||||||||||||||||||||||
seq2  CTGAAGGGGCTTTTGCCCCAGATCAGGCCCGGGTAGCCTGCTTCCCTATG  349

seq1  TAGCGCAGTCTCAAGTTCTGCGCGATTGGATTGGGGCAGGCGCTGTGTTC  207
      || | |||||||| |||| || | ||||||||||||||||||||||||||
seq2  TACCTCAGTCTCAGGTTCAGCACAATTGGATTGGGGCAGGCGCTGTGTTC  399

seq1  CACTCACCAGAGGTCTTAGGGTCCCGTGGGGAGTCCCGTGTGGGCCCTTG  257
      |||||||||||||||||||| |||||||||| ||||| ||||||||||||
seq2  CACTCACCAGAGGTCTTAGGATCCCGTGGGGGGTCCCATGTGGGCCCTTG  449

seq1  CGGGTGTTGGGCAAGACTCTGCTGTCAAGGTAGCCCGGGGCTCGAGTCTC  307
      ||||||||||||| |||||||||| |||||||||||||||       |||
seq2  CGGGTGTTGGGCACGACTCTGCTGGCAAGGTAGCCCGGGG-------CTC  492

seq1  GAGTCGAGCGGAAGGGACTTGTGCCCCAGATCAGGCCCGGGTAGCCTGCT  357
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  GAGTCGAGCAGAAGGGACTTGTGCCCCAGATCAGGCCTGGGTAGCCTGCT  542

seq1  TCCCTATGTACCGCAGTCTCAAGTTCCGCGCGATTGGATTGGGGCAGGCG  407
      ||||||||||| ||| ||||| ||||||||||||||||||||||||||||
seq2  TCCCTATGTACAGCATTCTCAGGTTCCGCGCGATTGGATTGGGGCAGGCG  592

seq1  CTGTGTTCCACTCACCAGAGGTCTTAGGGTCCCGTGGGGAGTCCCGTGTG  457
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  CTGTGTTCCACTCACCAGAGGTCTTAGGATCCCGTGGGGGGTCCCGTGTG  642

seq1  GGCCCTTGCAGGTGTTGGGCAAGACTCT  485
      ||||||||| ||||||||||||||||||
seq2  GGCCCTTGCGGGTGTTGGGCAAGACTCT  670


seq1: chr9_16580093_16581236
seq2: B6Ng01-295K12.g_68_1206

seq1  GAATTCATGAAATAAAGAAGAATTTCTTATGTAAATGTGAGACATTTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAATAAAGAAGAATTTCTTATGTAAATGTGAGACATTTGTA  50

seq1  AAATTTTCACAGATTTGGGTCACATTGCCCTCATAAAACTTGAAGGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCACAGATTTGGGTCACATTGCCCTCATAAAACTTGAAGGTAAA  100

seq1  GGGTTCTGTTTTCATGAAAGTTTGTTTATTAAACAACTGTAAATGTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGTTTTCATGAAAGTTTGTTTATTAAACAACTGTAAATGTTTCA  150

seq1  TTTTTCAAAGAAAGAATCTTCTCTTGGGAAAGGTATTTGCCACACCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAAGAAAGAATCTTCTCTTGGGAAAGGTATTTGCCACACCATTC  200

seq1  CTCTTACCACACAGCAGCTGAGCCTGGTGCCATTAACCAAGTCATCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACCACACAGCAGCTGAGCCTGGTGCCATTAACCAAGTCATCAGAG  250

seq1  CCACAAATTATGCATTAAAACCTAGTAAAAAATTGTCTTAGCAAAAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAATTATGCATTAAAACCTAGTAAAAAATTGTCTTAGCAAAAATAG  300

seq1  GTGTGGCTTTCAGAAGCTTAAATAAGTTACCATCTATGGTAGACATCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCTTTCAGAAGCTTAAATAAGTTACCATCTATGGTAGACATCATT  350

seq1  TAAAGTTCACTCTTTATCAAGTTCCTTATATGTGTTTCATAAATTCACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTCACTCTTTATCAAGTTCCTTATATGTGTTTCATAAATTCACTA  400

seq1  TGCAGACCCTATAGTAAGAGAGGACTAAATAAAAATTCCATTTTTTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACCCTATAGTAAGAGAGGACTAAATAAAAATTCCATTTTTTCTAT  450

seq1  TTGCCAGACATAATATTACAACTTATTTTCTCAGTTCATTCAATGAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGACATAATATTACAACTTATTTTCTCAGTTCATTCAATGAGAAT  500

seq1  AACATCACCTTCCTTTCAGGCCAATTTTCATGATGAAATGAGATAGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCACCTTCCTTTCAGGCCAATTTTCATGATGAAATGAGATAGTTTA  550

seq1  TGTAAAAATATTTGTGTGTAGATTTTAATCAATTTTTTTTGTTTTTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAATATTTGTGTGTAGATTTTAATCAATTTTTTTTGTTTTTACAA  600

seq1  ATCTGTTTTAAACATGTTGATAAACTTTAAAATAGTGATGAGTTTTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTTAAACATGTTGATAAACTTTAAAATAGTGATGAGTTTTTAGA  650

seq1  TGTCTGCTTATTCAGTCATTTGACCTGAAGCATTTATCTTGTATTATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTTATTCAGTCATTTGACCTGAAGCATTTATCTTGTATTATAGA  700

seq1  TAGCTGCATTGCTCTAATAATCCAGTTTCTGAGTCCCTAGACAAGTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCATTGCTCTAATAATCCAGTTTCTGAGTCCCTAGACAAGTGAAA  750

seq1  TCGAATACAAACTGACAGAACCATTTGATGTTTATGCATATGAGAAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATACAAACTGACAGAACCATTTGATGTTTATGCATATGAGAAAAAC  800

seq1  ACACACGGGATGAAAGACAGTATCTTAAAAAATGATCTTGTGAAAACTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGGGATGAAAGACAGTATCTTAAAAAATGATCTTGTGAAAACTGG  850

seq1  GTATCTACAGGTAGAAGAAT-GGAATTAGATACCTAATTTTACTCTGTAT  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTATCTACAGGTAGAAGAATGGGAATTAGATACCTAATTTTACTCTGTAT  900

seq1  ATAAATCAACCCAACATGAATCAAAGACTTTATACTAAAACCCAGAAGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCAACCCAACATGAATCAAAGACTTTATACTAAAACCCAGAAGTT  950

seq1  -GGAAATTACTAGAGGAAAGATTTAAAAAAAAAAAAAA---GAAAGTCAA  995
       |||||||||||||||||||||||||||||||||||||   |||||||||
seq2  GGGAAATTACTAGAGGAAAGATTTAAAAAAAAAAAAAAAAGGAAAGTCAA  1000

seq1  GATATAGATAGA-GGGAGGGAGTTCCTTTAAGCTCTAATTGCACATG-AA  1043
      |||||||||||| ||||||||||||  ||||||||||    |||||| ||
seq2  GATATAGATAGAGGGGAGGGAGTTC--TTAAGCTCTATGGCCACATGAAA  1048

seq1  AAAAAAAATCCCTTAAATTACTGTCTAAAATTGAAAACCTTCTATACAGC  1093
      |||||||||||||  || |||||||||||  |||||||||||||||||||
seq2  AAAAAAAATCCCT--AAGTACTGTCTAAA--TGAAAACCTTCTATACAGC  1094

seq1  AATGGAGATAACCAGAGTGATTAGGTAGACTACAGAATGATAGAAAATCT  1143
       |||||||||  |||||||||   |||||||||   |||||||||| |||
seq2  CATGGAGATA--CAGAGTGAT--AGTAGACTAC--GATGATAGAAATTCT  1138

seq1  T  1144
      |
seq2  T  1139


| Home | SequenceCutter | Blast | Download |