BAC Information

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BAC

Clone NameB6Ng01-295O19
Chromosome18 (Build37)
Map Location 17,948,552 - 17,949,704
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295O19.bB6Ng01-295O19.g
ACCGA091670GA091671
length1,1531,158
definitionB6Ng01-295O19.b B6Ng01-295O19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatggcacatctaccttgcttctgaactcattatcctgctgctac
atccactgtcgccatccttgttacattccttcactgatatcagcacctag
tatctaccagctgcccactgataatcagtccctcttcaggaattcttcag
ttcttcagtcatacaaactacaaagcatctagtctcttagacaatgcagc
tctcagatcttcagcctctcagtatgataactgccattgttagactgctc
agtctgcattgtacaagctggtctcctaagtttccttttaatatatgtcc
attttacttgtttgctcatctatggaaccctgaatattttgtgtactttt
tctgttatcatgcactaaaaaactacatgcggtttgaattttataatttt
gttaatgatatacatttaataaaaattcaatcccagttctgccttctcaa
taaatgaatttcagagtaatagcattctaatatataatcataatatttac
aaacaatatatgttacagataggtttgctttaggtatttagaattttttc
tgtttaaaacattcatttttaattataagcaaattatttttaacttattt
atgttaatacttttagtcatataatatagtggttacaaaatagttcagtg
tttcagctgttgtctttgaagataattttcctattatatacaaattttaa
gtttaatataattgcttctggtattgtcatgtgagatttaatgcacggaa
atacatcattaggtgaacctaatggcatacaaccttaaacacatctatcc
tgtcctaatacctcattgtcccaacctgtaaattagaatggcatgttatt
atactgaatagtgtattaaactgcaatgcaatggtatatgtatatttaag
tatatgtaaatgtagggaaaacacatagaagtcttaggggataaaaacgc
ctcaactccattataacattaaaatgtctccgtggtattatattgccacc
atcattaagtgaaacagtgttattcaataacatttgttattcagtgttat
aaacctcctaatgcccgtgtagctaatgtttatctaactataaaaaccta
tatataatgacgtttatttccggtgagcatgctacctaatgaattactga
ttc
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaacaaccctgagatt
ccacctcacaccaatcagaatggctaagatcaaaaattcaggtgacagca
gatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgg
gagtgcaggcttgtacaactactctggaaatcagtctggcggttcctcag
aaaactggacatagtactaccggaggatccagcaatacctctcctgggca
tatatccagaagatgccccaacaggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatctacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctagccaaa
tggatggacctggagggcatcatcctgagtgaggtaacacattcacaaag
aaactcacacaatatgtattcactgataagtggatattagccccaaacct
aggatacccaagatataagatataatttgctaaacacatgaaactcaagg
agaatgaagactgaagtgtggacactatgcccctccttagatttgggaac
aaaacacccatggaaggagttacagagacggagtttggagctgagatgaa
aggatggaccatgtagattctgccatagccagggatccaccccataatca
gcatccaaacgctgacaccattgcatacactagcaagattttattgaaag
gacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaaca
cagaagtggatgctcacagtcagctaatggatggatcatagggctccaat
ggaggagctagagaaagtagccagagctaatgggatctgcaccctatagt
gacaacattatgagctaagcagtacccggactctgactctagctgcatat
atatcaaaggatggcttagtccgccattcactgaaagagaggtccatttg
gacttgcaacttatattgcccaagtacagggcaatacccatggcccatac
aggcgcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17948552_17949704
seq2: B6Ng01-295O19.b_45_1197 (reverse)

seq1  GAATCAGTAATTCATGTAGGGTAAGCATGCTCCACGGAAATAAACCTTCA  50
      ||||||||||||||| ||||   |||||||||  |||||||||| | |||
seq2  GAATCAGTAATTCAT-TAGG--TAGCATGCTCACCGGAAATAAA-CGTCA  46

seq1  TTATTATTATTAGTTTTTATAATTTAGATAAACATTAGCTACAC-GGCAT  99
      ||||   |||  |||||||| | ||||||||||||||||||||| |||||
seq2  TTAT--ATATAGGTTTTTAT-AGTTAGATAAACATTAGCTACACGGGCAT  93

seq1  TTAGAG--TTAT-ACACTGAATAAC-AATGTTATTG-ATAACACTGTTTC  144
      |  |||  |||| |||||||||||| |||||||||| |||||||||||||
seq2  TAGGAGGTTTATAACACTGAATAACAAATGTTATTGAATAACACTGTTTC  143

seq1  ACTTAATGAT-GTGGCAATAT-ATACCACGGAGACATTTTAATGTTATAA  192
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  ACTTAATGATGGTGGCAATATAATACCACGGAGACATTTTAATGTTATAA  193

seq1  TGGAGTTGAGGCGTTTTTATCCCCTAAGACTTCTATTGTGTTTTCCCTAC  242
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGAGTTGAGGCGTTTTTATCCCCTAAGACTTCTA-TGTGTTTTCCCTAC  242

seq1  ATTTACATATACTTAAATATACATATACCATTGCATTGCAGTTTAATACA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATATACTTAAATATACATATACCATTGCATTGCAGTTTAATACA  292

seq1  CTATTCAGTATAATAACATGCCATTCTAATTTACAGGTTGGGACAATGAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGTATAATAACATGCCATTCTAATTTACAGGTTGGGACAATGAG  342

seq1  GTATTAGGACAGGATAGATGTGTTTAAGGTTGTATGCCATTAGGTTCACC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGGACAGGATAGATGTGTTTAAGGTTGTATGCCATTAGGTTCACC  392

seq1  TAATGATGTATTTCCGTGCATTAAATCTCACATGACAATACCAGAAGCAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGTATTTCCGTGCATTAAATCTCACATGACAATACCAGAAGCAA  442

seq1  TTATATTAAACTTAAAATTTGTATATAATAGGAAAATTATCTTCAAAGAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTAAACTTAAAATTTGTATATAATAGGAAAATTATCTTCAAAGAC  492

seq1  AACAGCTGAAACACTGAACTATTTTGTAACCACTATATTATATGACTAAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGAAACACTGAACTATTTTGTAACCACTATATTATATGACTAAA  542

seq1  AGTATTAACATAAATAAGTTAAAAATAATTTGCTTATAATTAAAAATGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAACATAAATAAGTTAAAAATAATTTGCTTATAATTAAAAATGAA  592

seq1  TGTTTTAAACAGAAAAAATTCTAAATACCTAAAGCAAACCTATCTGTAAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAACAGAAAAAATTCTAAATACCTAAAGCAAACCTATCTGTAAC  642

seq1  ATATATTGTTTGTAAATATTATGATTATATATTAGAATGCTATTACTCTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGTTTGTAAATATTATGATTATATATTAGAATGCTATTACTCTG  692

seq1  AAATTCATTTATTGAGAAGGCAGAACTGGGATTGAATTTTTATTAAATGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATTTATTGAGAAGGCAGAACTGGGATTGAATTTTTATTAAATGT  742

seq1  ATATCATTAACAAAATTATAAAATTCAAACCGCATGTAGTTTTTTAGTGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTAACAAAATTATAAAATTCAAACCGCATGTAGTTTTTTAGTGC  792

seq1  ATGATAACAGAAAAAGTACACAAAATATTCAGGGTTCCATAGATGAGCAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAACAGAAAAAGTACACAAAATATTCAGGGTTCCATAGATGAGCAA  842

seq1  ACAAGTAAAATGGACATATATTAAAAGGAAACTTAGGAGACCAGCTTGTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAAAATGGACATATATTAAAAGGAAACTTAGGAGACCAGCTTGTA  892

seq1  CAATGCAGACTGAGCAGTCTAACAATGGCAGTTATCATACTGAGAGGCTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAGACTGAGCAGTCTAACAATGGCAGTTATCATACTGAGAGGCTG  942

seq1  AAGATCTGAGAGCTGCATTGTCTAAGAGACTAGATGCTTTGTAGTTTGTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTGAGAGCTGCATTGTCTAAGAGACTAGATGCTTTGTAGTTTGTA  992

seq1  TGACTGAAGAACTGAAGAATTCCTGAAGAGGGACTGATTATCAGTGGGCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAAGAACTGAAGAATTCCTGAAGAGGGACTGATTATCAGTGGGCA  1042

seq1  GCTGGTAGATACTAGGTGCTGATATCAGTGAAGGAATGTAACAAGGATGG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAGATACTAGGTGCTGATATCAGTGAAGGAATGTAACAAGGATGG  1092

seq1  CGACAGTGGATGTAGCAGCAGGATAATGAGTTCAGAAGCAAGGTAGATGT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGTGGATGTAGCAGCAGGATAATGAGTTCAGAAGCAAGGTAGATGT  1142

seq1  GCCATGAATTC  1153
      |||||||||||
seq2  GCCATGAATTC  1153