BAC Information

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BAC

Clone NameB6Ng01-296E22
Chromosome18 (Build37)
Map Location 86,275,741 - 86,276,914
singlet/doubletsinglet
Overlap geneLOC545270
Upstream geneLOC665382, LOC545269
Downstream geneLOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296E22.bB6Ng01-296E22.g
ACCGA091950GA091951
length1,1671,198
definitionB6Ng01-296E22.b B6Ng01-296E22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgatctttccaagacttttatcatgaataggtgtccaatgtca
gcacaggagttataagctttcttggccatacactgatgttctatctgggg
aatggaaatcaaaactaagggcttcatattttagtagtaagtgcccttgt
cactgtggtaacttaattcccacattcatcctttaagattcttaaaaatc
attatagatatgtataaatcgtggtgatgtataagcaaggtacaataata
tggtgtgattgtaaaaacaaaaaacaaaaataaaaaaaacaaagacccaa
agtgtaatattagtaaagtaaagacagaaattttatttcctcagtagata
ttagacgtatgtatgcatatttgtgcttttgaattatttccaacaaatga
tccaaacaaggtaagctatataagaaaaccaaagcacttgagattaatcg
accacaacccaatatatgaggcagatataagctattggcacctcaagtcc
ccgtggggaacatattgacaaaatagaactgtagagattttgaacatcct
atgcagcataattactatgttgtcaggctcccacaaagtgagctggtttg
gcagctacaacataagcacaatacagactttaatcaaacttgactactta
aagttatattatcagatttcagttttattcatgaatctgtcaagtaaacg
aaattaaattaaagtctataaggagcaatggcttaaatattgtgttgtct
cacttggcaggggttgggtgggctgaatttggagaaaaaaaaacatacaa
tcctggtgaaaagaatttaaaataacaacgaaaacaaccccagtgtgttc
ctccactgagctttagcctgtgggcaacagttagtacttaaagcagaaat
gcaatctaggaacgattatgggaatttcaatgggaacatattaccagaga
tagcgaaatagcaacccaactaatttaacgttttactgcatatttacatt
ggagtttaagcaattacttcatggtagaaattccaacttacatttaaagc
aattgtcttatagttgtatcatactgaaatactagccttgcagcaaaaca
ggctgtctggtgagggagatgggtcttgtggatccagaacaacctgtaac
ggatttcttagtatcac
gaattccatacaaattttcctgatgaacattgatgtaaattgagtaaaaa
tttattttactcaataaaatttttgcacacagaatccaagaactcatcaa
aaacatcatccaccatgatgaaataggttttatcacatacatgaaatata
ggttttatcaatatatgaaaatccataaatgtaatccaccatataaataa
actgaaacacacacacacacacacacacacacacacacacacacacacac
acacaagatcatctcagatgttgtggatagccctggagctaattatattt
gatgttaattctgttttcctgtgagtggttgtgaacaaggaatgagtcag
cactcatgtgatttcctgtaaacctgctttccaccttaatttgtaaaata
aaggagagctgatgactgggtaaataaaagggaaggtgcaggggaagagg
gagagagaagaaggagaaaatgggagagaggatgaagaggaggaggcaga
agaaaaacagagcagaagcctgtttggcctggagaaactgcaagttctaa
ggggtctcatagatgtggaagatggtagtgtagtggtagatctgcccaat
ctaggcacacagcctgtattcatattaaccgtgttgtgttttccttgcca
gggcatatttgggaggagatttactgcaacacatgatcatttcattagat
gctgtaaaagcctttgataaaatccagcacccatcataataatagtcttg
gagagatcagcgataagagctctataacaaaacacaataaaggcagcata
tagcaagctgataacatcaaattaaatagagagaaacttaaagcaattcc
cctaaaaacagggataagacaagatggcccatatctttccatatctattc
aatatagtatttgaatttttagctagagcaataaaacaactaaacgagat
caggagatacaatatgaagaaagagtaaaatattctctattttcagacat
attgaatatttatattaagtgaattataaaagttcctacgagaagaactc
tacaattcaaaaatatcaaaagtccagctggaatacaaagtactcaaaga
aatcagtagcctctcctcattcatgataaacagacaagaaaaattacgta
cgaccctgtctattttaacacgattattatagcctaggttttgggtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_86275741_86276914
seq2: B6Ng01-296E22.b_44_1210 (reverse)

seq1  GTGATACT-AGAAA--CGTTACAGGTTTTGTCTGTGATCCACAAGA-CCA  46
      |||||||| |||||  ||||||||||| | |||| ||||||||||| |||
seq2  GTGATACTAAGAAATCCGTTACAGGTTGT-TCTG-GATCCACAAGACCCA  48

seq1  TCT-CCTCA-CAGACCAGCCTGTTTTTGCTGCAAGGGCTAGGTATTTTCA  94
      ||| ||||| |||| ||||||| ||||||||||| ||||| ||| |||||
seq2  TCTCCCTCACCAGA-CAGCCTG-TTTTGCTGCAA-GGCTA-GTA-TTTCA  93

seq1  GTTATGATACAACTATAAGACAATTGCTTTTAATTGTAAGTTTGGAATTT  144
      | ||||||||||||||||||||||||| ||||| |||||| |||||||||
seq2  G-TATGATACAACTATAAGACAATTGC-TTTAAATGTAAG-TTGGAATTT  140

seq1  CCTACCATGAAGTAATTGCTTTAAACTCCAATGTAAAATATGCAGTAAAA  194
       |||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  -CTACCATGAAGTAATTGC-TTAAACTCCAATGT-AAATATGCAGTAAAA  187

seq1  CGTTAAATTAGTTGGGTTGCTATTTCGCTATCTCTGGTAATATGTTCCCA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAAATTAGTTGGGTTGCTATTTCGCTATCTCTGGTAATATGTTCCCA  237

seq1  TTGAAATTCCCATAATCGTTCCTAGATTGCATTTCTGCTTTAAGTACTAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTCCCATAATCGTTCCTAGATTGCATTTCTGCTTTAAGTACTAA  287

seq1  CTGTTGCCCACAGGCTAAAGCTCAGTGGAGGAACACACTGGGGTTGTTTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCCCACAGGCTAAAGCTCAGTGGAGGAACACACTGGGGTTGTTTT  337

seq1  CGTTGTTATTTTAAATTCTTTTCACCAGGATTGTATGTTTTTTTTTCTCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTTATTTTAAATTCTTTTCACCAGGATTGTATGTTTTTTTTTCTCC  387

seq1  AAATTCAGCCCACCCAACCCCTGCCAAGTGAGACAACACAATATTTAAGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGCCCACCCAACCCCTGCCAAGTGAGACAACACAATATTTAAGC  437

seq1  CATTGCTCCTTATAGACTTTAATTTAATTTCGTTTACTTGACAGATTCAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTCCTTATAGACTTTAATTTAATTTCGTTTACTTGACAGATTCAT  487

seq1  GAATAAAACTGAAATCTGATAATATAACTTTAAGTAGTCAAGTTTGATTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAACTGAAATCTGATAATATAACTTTAAGTAGTCAAGTTTGATTA  537

seq1  AAGTCTGTATTGTGCTTATGTTGTAGCTGCCAAACCAGCTCACTTTGTGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGTATTGTGCTTATGTTGTAGCTGCCAAACCAGCTCACTTTGTGG  587

seq1  GAGCCTGACAACATAGTAATTATGCTGCATAGGATGTTCAAAATCTCTAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGACAACATAGTAATTATGCTGCATAGGATGTTCAAAATCTCTAC  637

seq1  AGTTCTATTTTGTCAATATGTTCCCCACGGGGACTTGAGGTGCCAATAGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTATTTTGTCAATATGTTCCCCACGGGGACTTGAGGTGCCAATAGC  687

seq1  TTATATCTGCCTCATATATTGGGTTGTGGTCGATTAATCTCAAGTGCTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTGCCTCATATATTGGGTTGTGGTCGATTAATCTCAAGTGCTTT  737

seq1  GGTTTTCTTATATAGCTTACCTTGTTTGGATCATTTGTTGGAAATAATTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTTATATAGCTTACCTTGTTTGGATCATTTGTTGGAAATAATTC  787

seq1  AAAAGCACAAATATGCATACATACGTCTAATATCTACTGAGGAAATAAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACAAATATGCATACATACGTCTAATATCTACTGAGGAAATAAAA  837

seq1  TTTCTGTCTTTACTTTACTAATATTACACTTTGGGTCTTTGTTTTTTTTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTTTACTTTACTAATATTACACTTTGGGTCTTTGTTTTTTTTA  887

seq1  TTTTTGTTTTTTGTTTTTACAATCACACCATATTATTGTACCTTGCTTAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTTGTTTTTACAATCACACCATATTATTGTACCTTGCTTAT  937

seq1  ACATCACCACGATTTATACATATCTATAATGATTTTTAAGAATCTTAAAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACCACGATTTATACATATCTATAATGATTTTTAAGAATCTTAAAG  987

seq1  GATGAATGTGGGAATTAAGTTACCACAGTGACAAGGGCACTTACTACTAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGTGGGAATTAAGTTACCACAGTGACAAGGGCACTTACTACTAA  1037

seq1  AATATGAAGCCCTTAGTTTTGATTTCCATTCCCCAGATAGAACATCAGTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAGCCCTTAGTTTTGATTTCCATTCCCCAGATAGAACATCAGTG  1087

seq1  TATGGCCAAGAAAGCTTATAACTCCTGTGCTGACATTGGACACCTATTCA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCCAAGAAAGCTTATAACTCCTGTGCTGACATTGGACACCTATTCA  1137

seq1  TGATAAAAGTCTTGGAAAGATCAGGAATTC  1174
      ||||||||||||||||||||||||||||||
seq2  TGATAAAAGTCTTGGAAAGATCAGGAATTC  1167