BAC Information

Click to search

BAC

Clone NameB6Ng01-296H19
Chromosome18 (Build37)
Map Location 4,685,378 - 4,842,328
singlet/doubletdoublet
Overlap geneLOC268988
Upstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik
Downstream geneSvil, Zfp438, LOC100039442, Zeb1, EG664925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296H19.bB6Ng01-296H19.g
ACCGA092088GA092089
length1,058531
definitionB6Ng01-296H19.b B6Ng01-296H19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,685,378 - 4,686,442)(4,841,795 - 4,842,328)
sequence
gaattcttatatagtagcttccatcctaaaagaacttcatggggccaaaa
aggttattagcataccacctatcaccaattcttcctaggtagctgttgag
aagaattaattctcctcccagattaatcaattcccttaaaaaaaaaaaaa
gtttcccaggaagcaccacacttctaagttcaggccttgactgggaagat
ctgtttagctgggcaccattgtggacagccaatgttctgtcactaatgaa
gacagtagccataggtattgcctgggacctaacaggtttgtcataatttc
tctggggaaattggacactgattggccagtagggcagaggagaattgtgc
caggctctggggaaagttggtgagacgggtgcctgaaacccaatcatact
cagagacaaacacactttcggcagtgtttcactgaaggcaaggaatagtc
ctgggtgaaagtgccatctctgagcacctgccactgcagatcacagggac
tgtgggacacaaacaggccactggtcatgtgtgagtcaagtggactgacc
agagaagagacccagagttggagagaaaagcagaggtcacatccattagc
ccatccagtccctgaaggcccagagccctttccctttgaacactatggag
tcatcaggaggttgcagttctagttcctataacagtggcttaggattttt
ttttttcagtatagagtgatgtctttggatgcagttagagacaaaaccta
gtgtcttacttagggttttactgctgtgaacagacaccaagaccataaga
cttgccttgtcttataaaaacaacatttaattggggctggcttacaggtt
cagaggttcagtccattatcatcaaggtgggagcatggcagtatccaggc
aggcatggcacagcagagctgagagttctacattctttcatccaaaggct
gctagtggaagacttacttccaggcacctagggtgagagtattaagccca
cacccacagtgcacacttactccacaggtcacacctatcacaagccacat
tccaaatg

caggaagatatcaagactagagggaaatcagaagccatgttgacatagag
tgtttcagattagctagctgccctgacatgttcagatgaaagttcaagag
acataggaatgaaacctgggacatctgaggcttagcaacaggaaaaggaa
caaaacaccagaaagactttcaaggagccattggaagtatgggaggtgac
tgcatgaggaatatagcccagtgttgaggtgtaagctctacttcatggag
tggagatgaatcatagagagcagccaggagtctgagtcctgccaaggtga
gcaatagatttggccaggatgatggagattgtggggtgcaggatgctggt
gatgcaggagggaggctgagttgagtgactggagagagaagaaaggggga
gagagagggaaggaagggaggcagaagaaccgctgggggttttttgtaga
actcacagatgaaagcagatagacatgtgcaggttctttaaaggtgggat
gtgccctaggtgaggagtagagggggaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_4685378_4686442
seq2: B6Ng01-296H19.b_46_1103

seq1  GAATTCTTATATAGTAGCTTCCATCCTAAAAGAACTTCATGGGGCCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATATAGTAGCTTCCATCCTAAAAGAACTTCATGGGGCCAAAA  50

seq1  AGGTTATTAGCATACCACCTATCACCAATTCTTCCTAGGTAGCTGTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATTAGCATACCACCTATCACCAATTCTTCCTAGGTAGCTGTTGAG  100

seq1  AAGAATTAATTCTCCTCCCAGATTAATCAATTCCCTTAAAAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAATTCTCCTCCCAGATTAATCAATTCCCTTAAAAAAAAAAAAA  150

seq1  GTTTCCCAGGAAGCACCACACTTCTAAGTTCAGGCCTTGACTGGGAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCAGGAAGCACCACACTTCTAAGTTCAGGCCTTGACTGGGAAGAT  200

seq1  CTGTTTAGCTGGGCACCATTGTGGACAGCCAATGTTCTGTCACTAATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAGCTGGGCACCATTGTGGACAGCCAATGTTCTGTCACTAATGAA  250

seq1  GACAGTAGCCATAGGTATTGCCTGGGACCTAACAGGTTTGTCATAATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAGCCATAGGTATTGCCTGGGACCTAACAGGTTTGTCATAATTTC  300

seq1  TCTGGGGAAATTGGACACTGATTGGCCAGTAGGGCAGAGGAGAATTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGAAATTGGACACTGATTGGCCAGTAGGGCAGAGGAGAATTGTGC  350

seq1  CAGGCTCTGGGGAAAGTTGGTGAGACGGGTGCCTGAAACCCAATCATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTGGGGAAAGTTGGTGAGACGGGTGCCTGAAACCCAATCATACT  400

seq1  CAGAGACAAACACACTTTCGGCAGTGTTTCACTGAAGGCAAGGAATAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAAACACACTTTCGGCAGTGTTTCACTGAAGGCAAGGAATAGTC  450

seq1  CTGGGTGAAAGTGCCATCTCTGAGCACCTGCCACTGCAGATCACAGGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGAAAGTGCCATCTCTGAGCACCTGCCACTGCAGATCACAGGGAC  500

seq1  TGTGGGACACAAACAGGCCACTGGTCATGTGTGAGTCAAGTGGACTGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGACACAAACAGGCCACTGGTCATGTGTGAGTCAAGTGGACTGACC  550

seq1  AGAGAAGAGACCCAGAGTTGGAGAGAAAAGCAGAGGTCACATCCATTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAGACCCAGAGTTGGAGAGAAAAGCAGAGGTCACATCCATTAGC  600

seq1  CCATCCAGTCCCTGAAGGCCCAGAGCCCTTTCCCTTTGAACACTATGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAGTCCCTGAAGGCCCAGAGCCCTTTCCCTTTGAACACTATGGAG  650

seq1  TCATCAGGAGGTTGCAGTTCTAGTTCCTATAACAGTGGCTTAGGATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGGAGGTTGCAGTTCTAGTTCCTATAACAGTGGCTTAGGATTTTT  700

seq1  TTTTTTCAGTATAGAGTGATGTCTTTGGATGCAGTTAGAGACAAAACCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGTATAGAGTGATGTCTTTGGATGCAGTTAGAGACAAAACCTA  750

seq1  GTGTCTTACTTAGGGTTTTACTGCTGTGAACAGACACCAAGACCATAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTACTTAGGGTTTTACTGCTGTGAACAGACACCAAGACCATAAGA  800

seq1  CTTGCCTTGTCTTATAAAAACAACATTTAATTGGGGCTGGCTTACAGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTGTCTTATAAAAACAACATTTAATTGGGGCTGGCTTACAGGTT  850

seq1  CAGAGGTTCAGTCCATTATCATCAAGGTGGGAGCATGGCAGTATCCAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTCAGTCCATTATCATCAAGGTGGGAGCATGGCAGTATCCAGGC  900

seq1  AGGCATGGCACAGGCAGAGCTGAGAGTTCTACAT--CTTCATCCAAAGGC  948
      |||||||||||| |||||||||||||||||||||   |||||||||||||
seq2  AGGCATGGCACA-GCAGAGCTGAGAGTTCTACATTCTTTCATCCAAAGGC  949

seq1  TGCTAGTGGAAGACTTACTTCCAGGCACCTAGGGTGAGAGTATTAAGCCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTGGAAGACTTACTTCCAGGCACCTAGGGTGAGAGTATTAAGCCC  999

seq1  ACACCCACAGTGGCACACTTACTCCAACCAGGTCACACCTATTCCAACAA  1048
      ||||||||||| ||||||||||||||  ||||||||||||||  |||   
seq2  ACACCCACAGT-GCACACTTACTCCA--CAGGTCACACCTATCACAA---  1043

seq1  GGCCACATTTCCAAATG  1065
       |||||| |||||||||
seq2  -GCCACA-TTCCAAATG  1058


seq1: chr18_4841795_4842328
seq2: B6Ng01-296H19.g_64_599 (reverse)

seq1  CTTTCCCCCTCTACTCC-CACCTAGGGCACAT-CCACCTTTAAAGAACCT  48
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  CTTTCCCCCTCTACTCCTCACCTAGGGCACATCCCACCTTTAAAGAACCT  50

seq1  GCACATGTCTATCTGCTTTCATCTGTGAGTTCTACAAAAAACCCCCAGCG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGTCTATCTGCTTTCATCTGTGAGTTCTACAAAAAACCCCCAGCG  100

seq1  GTTCTTCTGCCTCCCTTCCTTCCCTCTCTCTCCCCCTTTCTTCTCTCTCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTGCCTCCCTTCCTTCCCTCTCTCTCCCCCTTTCTTCTCTCTCC  150

seq1  AGTCACTCAACTCAGCCTCCCTCCTGCATCACCAGCATCCTGCACCCCAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTCAACTCAGCCTCCCTCCTGCATCACCAGCATCCTGCACCCCAC  200

seq1  AATCTCCATCATCCTGGCCAAATCTATTGCTCACCTTGGCAGGACTCAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCATCATCCTGGCCAAATCTATTGCTCACCTTGGCAGGACTCAGA  250

seq1  CTCCTGGCTGCTCTCTATGATTCATCTCCACTCCATGAAGTAGAGCTTAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCTGCTCTCTATGATTCATCTCCACTCCATGAAGTAGAGCTTAC  300

seq1  ACCTCAACACTGGGCTATATTCCTCATGCAGTCACCTCCCATACTTCCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAACACTGGGCTATATTCCTCATGCAGTCACCTCCCATACTTCCAA  350

seq1  TGGCTCCTTGAAAGTCTTTCTGGTGTTTTGTTCCTTTTCCTGTTGCTAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTTGAAAGTCTTTCTGGTGTTTTGTTCCTTTTCCTGTTGCTAAG  400

seq1  CCTCAGATGTCCCAGGTTTCATTCCTATGTCTCTTGAACTTTCATCTGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGATGTCCCAGGTTTCATTCCTATGTCTCTTGAACTTTCATCTGAA  450

seq1  CATGTCAGGGCAGCTAGCTAATCTGAAACACTCTATGTCAACATGGCTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGGGCAGCTAGCTAATCTGAAACACTCTATGTCAACATGGCTTC  500

seq1  TGATTTCCCTCTAGTCTTGATATCTTCCTGGAATTC  534
      ||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCCTCTAGTCTTGATATCTTCCTGGAATTC  536


| Home | SequenceCutter | Blast | Download |