BAC Information

Click to search

BAC

Clone NameB6Ng01-297J23
Chromosome18 (Build37)
Map Location 15,571,878 - 15,572,954
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b, LOC669965, Kctd1, EG622268, LOC100040151, Aqp4
Downstream geneLOC665473, Chst9, LOC670012, LOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297J23.bB6Ng01-297J23.g
ACCGA092936GA092937
length1,1861,077
definitionB6Ng01-297J23.b B6Ng01-297J23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatcttgggtattctgagcttttgggctaacaaccacttattag
taagtgtgttcttttgtgactggctacctcactcaggatgatattttcta
gttctatccatttgactaagaatttcatgaattcattgtttttaatagct
gaatagtactccactgtgtaaatgtaccacattttctgtatccattcttc
tgttgaaggacatctgggttctttccaccttctggtttttataaataagg
ctgctatgaacatagtggagcatgtgtccttattacatcttgaagcatct
tctgggtatatgcccaggagaagtatagctgggtcctcaggtaatactat
gtgtaattttctgaggaaccaccagacagatttccagagtagttgaacca
gcttgcaagcccatcagtaatgaagaagtgtttctctttctccacatcct
cacccgcatctactgtcacctgagttttttatcttagtcattctgactgg
tgataggtggaatgtcagggttgttttgatttgcatttccctgatgacta
aggatgttgaacatttctttaggtgcttctcggtcattcgacattcttca
gttgagaattctttgcttatctctgtaccccattttcaatagggttattt
ggttctctggagcttaccttcttgagtcctttgtatatattggatattag
ccctctatcagatgtagaattggtaaagatctcttcccaatctgttggtt
gctgttttgtcctattgacagtgtattttgccttataaaagctttgtaat
tttatgaggttccatttgtcaattattgatcttagagcataaaaatactc
aataaaattctcgcaaactaaattcaagaacatttcaaaacaaccattca
ccaagaacaagtaggtttcatctcagggatgcagggacaattcataatgg
aatccatcaacatatgtaaacatcagctatataaacaaaatcaaaaaatc
ttcctgatcatctcataaatgctaagaaagcatttgacaaaattacaccc
cttcatgataaaaagtcttggaaagatcagattcagggccgtacctaaac
ttataagccaatgtaagcaacccctagccaactcaactaatggcaagaaa
ttgaagcgcttccaattaaattactggggcactgca
gaattccaggcaatgcagtgttattctaatcccttattctggaaaccagg
aaagctgcctacataatgcatctctcaaattgaagtagtcttaaacctgc
ctccttactgatcttacccataatactatgccctctagaaatcccttgtt
ttcctcccttttacctttactctccaggtttagtctcttcttatttggct
acttcttcttagtcttctttggtcctattatttattcagtgaccagtgag
atagtttgctgttaagagcattttttgctgtagaagacccaggttgcttc
ctagtaggcatatgtggctcacaaccatccatcagccatttgggggaatc
cagttttctgcaagtaccaggcacacatgcggtgcccataaaaatctgca
ggtaaaacattcatgcacataaaatattttctaaatctaagcaagttaaa
aagggatgtttcataactcaaaacttttgagtgtttaagatcatttagct
ggcatgtgtctccccacacctcagatttgcattgctggagaatgggagat
ttgtaccttttggcttctgaaaaatgccctaaagcttgtatctaaggttc
ccctgtaaaggcagacgggggtgatgacagaaagggattaataagaggcc
acttccatttagtctctccttttccccgactgactcttatttgtattttg
gtactgagttcaggaactgtgtcttctgacttccttaagggttagtcagc
actaccacctaaatgctcagaattttaaaatcatgcactgtaattgcctg
cttacatttcttaattaaactatgcatgctgaaaaggtgcgacaatgcta
tttttgctgtacaccctgaaaatctagtatagggccctggtgcctggcac
atttttattatttaatattgatgaataaacaatatggtgaatttacaagt
gagttgggccattcctgagaaatgtgtctgagagacagataagtagtata
cttaggtattcttaagattttaggattattttcatagaaaatacgattgg
gggtggaatttgggaacacctcgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_15571878_15572954
seq2: B6Ng01-297J23.g_64_1140

seq1  GAATTCCAGGCAATGCAGTGTTATTCTAATCCCTTATTCTGGAAACCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCAATGCAGTGTTATTCTAATCCCTTATTCTGGAAACCAGG  50

seq1  AAAGCTGCCTACATAATGCATCTCTCAAATTGAAGTAGTCTTAAACCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGCCTACATAATGCATCTCTCAAATTGAAGTAGTCTTAAACCTGC  100

seq1  CTCCTTACTGATCTTACCCATAATACTATGCCCTCTAGAAATCCCTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTACTGATCTTACCCATAATACTATGCCCTCTAGAAATCCCTTGTT  150

seq1  TTCCTCCCTTTTACCTTTACTCTCCAGGTTTAGTCTCTTCTTATTTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCTTTTACCTTTACTCTCCAGGTTTAGTCTCTTCTTATTTGGCT  200

seq1  ACTTCTTCTTAGTCTTCTTTGGTCCTATTATTTATTCAGTGACCAGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCTTAGTCTTCTTTGGTCCTATTATTTATTCAGTGACCAGTGAG  250

seq1  ATAGTTTGCTGTTAAGAGCATTTTTTGCTGTAGAAGACCCAGGTTGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTGCTGTTAAGAGCATTTTTTGCTGTAGAAGACCCAGGTTGCTTC  300

seq1  CTAGTAGGCATATGTGGCTCACAACCATCCATCAGCCATTTGGGGGAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGGCATATGTGGCTCACAACCATCCATCAGCCATTTGGGGGAATC  350

seq1  CAGTTTTCTGCAAGTACCAGGCACACATGCGGTGCCCATAAAAATCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCTGCAAGTACCAGGCACACATGCGGTGCCCATAAAAATCTGCA  400

seq1  GGTAAAACATTCATGCACATAAAATATTTTCTAAATCTAAGCAAGTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAACATTCATGCACATAAAATATTTTCTAAATCTAAGCAAGTTAAA  450

seq1  AAGGGATGTTTCATAACTCAAAACTTTTGAGTGTTTAAGATCATTTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATGTTTCATAACTCAAAACTTTTGAGTGTTTAAGATCATTTAGCT  500

seq1  GGCATGTGTCTCCCCACACCTCAGATTTGCATTGCTGGAGAATGGGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTGTCTCCCCACACCTCAGATTTGCATTGCTGGAGAATGGGAGAT  550

seq1  TTGTACCTTTTGGCTTCTGAAAAATGCCCTAAAGCTTGTATCTAAGGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCTTTTGGCTTCTGAAAAATGCCCTAAAGCTTGTATCTAAGGTTC  600

seq1  CCCTGTAAAGGCAGACGGGGGTGATGACAGAAAGGGATTAATAAGAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAAAGGCAGACGGGGGTGATGACAGAAAGGGATTAATAAGAGGCC  650

seq1  ACTTCCATTTAGTCTCTCCTTTTCCCCGACTGACTCTTATTTGTATTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATTTAGTCTCTCCTTTTCCCCGACTGACTCTTATTTGTATTTTG  700

seq1  GTACTGAGTTCAGGAACTGTGTCTTCTGACTTCCTTAAGGGTTAGTCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAGTTCAGGAACTGTGTCTTCTGACTTCCTTAAGGGTTAGTCAGC  750

seq1  ACTACCACCTAAATGCTCAGAATTTTAAAATCATGCACTGTAATTGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCACCTAAATGCTCAGAATTTTAAAATCATGCACTGTAATTGCCTG  800

seq1  CTTACATTTCTTAATTAAACTATGCATGCTGAAAAGGTGCGACAATGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATTTCTTAATTAAACTATGCATGCTGAAAAGGTGCGACAATGCTA  850

seq1  TTTTTGCTGTACACCCTGAAAATCTAGTATAGGG-CCTGGTGCCTGGCAC  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTTTGCTGTACACCCTGAAAATCTAGTATAGGGCCCTGGTGCCTGGCAC  900

seq1  ATTTTTATTATTTAATATTGATGAATAAACAAATATGGTGAATTTACAAG  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTTTTATTATTTAATATTGATGAATAAAC-AATATGGTGAATTTACAAG  949

seq1  TGAGTT-GGCCATTCCTGAGAAATGTGTCTTGAAGAGACAGATAAGTAGT  998
      |||||| |||||||||||||||||||||||   |||||||||||||||||
seq2  TGAGTTGGGCCATTCCTGAGAAATGTGTCT--GAGAGACAGATAAGTAGT  997

seq1  ATACTTAGGTATTCTAAAGATTTTAGGATTATTTTCATAGAAATAACGAT  1048
      ||||||||||||||| |||||||||||||||||||||||||||  |||||
seq2  ATACTTAGGTATTCTTAAGATTTTAGGATTATTTTCATAGAAAATACGAT  1047

seq1  TGGGGGTGG-ATTTGGGAACACCTCGGGTG  1077
      ||||||||| ||||||||||||||||||||
seq2  TGGGGGTGGAATTTGGGAACACCTCGGGTG  1077