BAC Information

Click to search

BAC

Clone NameB6Ng01-298B20
Chromosome18 (Build37)
Map Location 5,401,681 - 5,402,406
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988, Svil, Zfp438
Downstream geneLOC100039442, Zeb1, EG664925, Arhgap12, Kif5b, LOC100039469, EG621100, LOC665028, EG622152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298B20.bB6Ng01-298B20.g
ACCGA093309GA093310
length1,198732
definitionB6Ng01-298B20.b B6Ng01-298B20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaccagacactcaaagaatgaatgtcaatactcctcaaaatatt
tgacaaaatagaaactgaaaggacattttctaattatttttacaaagcca
ctattactctgatatcataaacatacaaaaacccaacaaaaagaaaattg
taaatgtatatagctttgaacatagatgcaaaaaactcaattaaatactt
gaaatacaagtctaagaagacataaaatgattttccaccatgattaagtt
tgattcttcccagagagacagaggtagttaagtatatataaataaaaatg
tagtccaccacaaaaacagactaaagacaaaaaaaatgttcatcttatta
gatgcaggaaaggcttttgacaagaaccaacaccccttcatgataaacta
aagcacagggatacaagagataaatctcagtgtgattaaggtggtttaca
ccaaacccatgggcaacatcaacctaaacagagagaaactcaaagcattt
ccactaaacttaggaacaaaactgctctttccatggctattcagtatgta
cttgaagaagttttagctagagcagtaagacaactgaggaaaccaaaggg
gattcaattaggaaatgtcaaaatgtccttgtttataaaagacatgattt
tattaaagaccctacccggaggcttttacagctgataatttcagcaaagt
agcttgatactagcttcacccacaaagatccgtagcctcagtatgataag
cattctgagaaaaaaaaatagacaaatagtactttaaacatgagcctcaa
aaaaaatcttggtgtaactctaaccaacaagtgaaaggtttgtataataa
aacttaaaggcactgcagaaagaaattgaagaagatattggaagatgaaa
aggtctctcctgctcatagatcattaatattgagagaatggtcatcctac
caaaagcagtctacagattaaaacacaatcccaatcaaatcctaccacaa
ttcttcacagaaattgaaacaacagccttcacctaatatagaaaccacaa
aaccaccagatagctaaacctatcctacataataaagaactgctggaggt
atcatcacaaccgctggtgctacagaactataatataaaaaattgactta
aacagcaccttgatcatgaaactaattgaaaaccctggacatctacat
gaattccagagattagaatcaagtaagaaaagggaagggaagggcctcta
gttaaggcccgaataaacagtgctgtagagtgagtgctctgtggagctct
ggctggatcacggataggtgtatctgaaaacatattattcggggacatgg
ggaggtggctcgatgaggaaagtgtttggcgtgtaagcatgaggacccaa
attcaaatccccaaagcccctgtaaaagcagacacagtagcacaggtacc
cagaatcccagagctacaggaagatagatacagaatccccagaagctagc
cggccatgtggtatgcacagcggaaagcaacaaaagagaccctgtctcgg
ataagaactgacctgacaaccatgcttgtcctctgatcgccacaaatgca
ctggcacacgcacaagcatgggcacacagactgtgtagggatagatctct
ctctaggtcctagggagagctttgcagaggagggagtttggagggctgac
gctcgctcgtttgcatcaggaaccctttttacagaactccctccccagga
agcactaaagctaagcagcaaagaaagcacctccctgggggattctggga
gccgcgcaagtcctgaaatactctaagatggccaagtcttacaggctggt
ttttgaggtttctcatgcgctcagaatgtcagggtgtgagaagcagagtg
ggctgctgcaagacctgtgggggccctggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_5401681_5402406
seq2: B6Ng01-298B20.g_71_802

seq1  GAATTCCAGAGATTAGAATCAAGTAAGAAAAGGGAAGGGAAGGGCCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGATTAGAATCAAGTAAGAAAAGGGAAGGGAAGGGCCTCTA  50

seq1  GTTAAGGCCCGAATAAACAGTGCTGTAGAGTGAGTGCTCTGTGGAGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGCCCGAATAAACAGTGCTGTAGAGTGAGTGCTCTGTGGAGCTCT  100

seq1  GGCTGGATCACGGATAGGTGTATCTGAAAACATATTATTCGGGGACATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGATCACGGATAGGTGTATCTGAAAACATATTATTCGGGGACATGG  150

seq1  GGAGGTGGCTCGATGAGGAAAGTGTTTGGCGTGTAAGCATGAGGACCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGCTCGATGAGGAAAGTGTTTGGCGTGTAAGCATGAGGACCCAA  200

seq1  ATTCAAATCCCCAAAGCCCCTGTAAAAGCAGACACAGTAGCACAGGTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATCCCCAAAGCCCCTGTAAAAGCAGACACAGTAGCACAGGTACC  250

seq1  CAGAATCCCAGAGCTACAGGAAGATAGATACAGAATCCCCAGAAGCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCCCAGAGCTACAGGAAGATAGATACAGAATCCCCAGAAGCTAGC  300

seq1  CGGCCATGTGGTATGCACAGCGGAAAGCAACAAAAGAGACCCTGTCTCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCATGTGGTATGCACAGCGGAAAGCAACAAAAGAGACCCTGTCTCGG  350

seq1  ATAAGAACTGACCTGACAACCATGCTTGTCCTCTGATCGCCACAAATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAACTGACCTGACAACCATGCTTGTCCTCTGATCGCCACAAATGCA  400

seq1  CTGGCACACGCACAAGCATGGGCACACAGACTGTGTAGGGATAGATCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACACGCACAAGCATGGGCACACAGACTGTGTAGGGATAGATCTCT  450

seq1  CTCTAGGTCCTAGGGAGAGC-TTGCAGAGGAGGGAGTTTGGAGGGCTGAC  499
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCTAGGTCCTAGGGAGAGCTTTGCAGAGGAGGGAGTTTGGAGGGCTGAC  500

seq1  GCTCGCTCGTTTGCATCAGGAACCC-TTTTACAGAACTCCCTCCCCAGGA  548
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCTCGCTCGTTTGCATCAGGAACCCTTTTTACAGAACTCCCTCCCCAGGA  550

seq1  AGCACTAAAGCTAAGCAGCAAAGAAAGCACCT-CCTGGGGGATTCTGGGA  597
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGCACTAAAGCTAAGCAGCAAAGAAAGCACCTCCCTGGGGGATTCTGGGA  600

seq1  GCCGCGCAAGTCCTGAAATACTCTAAGATGGCCAAGTCTTACAGGCAGG-  646
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  GCCGCGCAAGTCCTGAAATACTCTAAGATGGCCAAGTCTTACAGGCTGGT  650

seq1  TCTTGAGG-TTCTCATGCGCTCAGAATGCCAGGGTGTGAGAAGCAGAGTG  695
      | |||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTGAGGTTTCTCATGCGCTCAGAATGTCAGGGTGTGAGAAGCAGAGTG  700

seq1  GGCTGCTGCAGAGA-CTGT-GGGGCCCTGGAGG  726
      |||||||||| ||| |||| |||||||||||||
seq2  GGCTGCTGCA-AGACCTGTGGGGGCCCTGGAGG  732