BAC Information

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BAC

Clone NameB6Ng01-298E05
Chromosome18 (Build37)
Map Location 30,414,016 - 30,415,183
singlet/doubletsinglet
Overlap genenone
Upstream gene4930578E11Rik, LOC666073
Downstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168, Rit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298E05.bB6Ng01-298E05.g
ACCGA093417GA093418
length1,2071,160
definitionB6Ng01-298E05.b B6Ng01-298E05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaaccgaggaataccgaagggctgagaagcacttgaaaaaatg
ttcaacatccttaatcaccagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacaac
agatgctggaaagaatgtggagacagaggaacactcctccattgctggtg
ggattgcaagcttgtacaaccactctggaaatcagtgtggcagttcctca
aaaaactggacatagtactactggtagatccagcaatacctctcctgggc
atatacccagaagatgttccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaagccagat
gttcctcaacaaaggaatggatacagaaaatgtattcatgttacacaata
gagtactactattaaaaacaatgaatttatgaaattcttggggaaatgga
tgtcatcctgagagaggtaacccaatcacaaaagaagtcacttgatatgc
actcactgataagtggatattagcccagaaacctagaatacccaagatac
aacttccaaaatacaagaaaatcaagatggaagaccaacttgtggatact
tcattcctccctagaatagggaataaaatatccatggaaggagttgcaga
gacaaagtttagagctaagatgaaaggatggaccatccagagactgcccc
actgcagtccatcccataatcagccaccaaacacagacactattgcatat
gccagcaagattttgctgaaaggaccctgatatagatgtctcctaagagg
ctttaccagtacctggcaaatacagaagtagatgctcacagtcatctata
ggatggaacacagggcgcgcaatgtaggagcaagagaaagtacccaagag
ctgaagggtctgcaaccctatagtggaacaacaatatgaactaaccagta
cccctgatgctcgtgtcttctagctgcatatgtagcagaggatgggccta
gtcggcatcatgggaagaagaggccccttggtctttgcaactttatatgc
tcaagtacagggaaagtcagttccaagaagtggttagtgattggttaggg
atcaggccagggggagagaggctatcgggctccattgcgccatctagctg
actacgt
gaattccagaaggctccttaaaggcacaggaggggaagaaagagtcaggt
ggaagggacctgagtcaaatcaaggacagcacagccaagtggacaggaga
atacagtaataatggatgtaagtgctaagagaaagaaactgcagaataaa
aagtagaaagagtgaaaatttccactccagagtctccaatttcagttatg
tgtctctttaagaatttccatagtaattactcctaccttgaagaaaagaa
tgcttgtccaggctagaaatgagatttgataagagaacaaagattcaaag
agacaatgaaacacctggacttccatgttcctagagacaacaagtcaaac
cagggagcagttctgcaagtgtctcttttttatcataaaccaaaaccaaa
gttttactgagctttgattcttcataaaaatttgtaggacatagagatgt
ttttgcttacttatggaattattactgattctttttctcagtgtttgagt
atgacagttctgagtaacaccctttttgcatattcagatcacatttttat
catcttctcccagaagtaaaatatttctttctcatttgtgatagttaatg
taaagacatagtaaacagaaagtttggaaagtttgaactcttgtgaaatg
gaatcaggattatggtcctcaaacctctgtcacaatttggccattaacta
actagtcactgttctattgctgtgaagacacaccatgatcaagacaactt
ttatacaagaaatcatttaattggggtcttacagctttggaaggttggtc
cattatcatggcagggagcacagcagcacacaagcaagcatgatgctgaa
gaattagctgagaacaatacccttatcctcaggcagcagtcaagagaagg
aagaccctgggctaggtgtgggctttgggaacctccaatcccaggtccag
tgacacacttgctccaacaagtcatacctactccaaacagccacatcctt
cacataataccattcctagtgactaaacatcactgtatgagcctatgcag
gccatgtttcaaccaccacatggactcatctggtgttttcataaaagctc
tcattaatatatactatggattattcatggctggctcatgaatcaccagt
gcgttgtaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_30414016_30415183
seq2: B6Ng01-298E05.g_66_1225

seq1  GAATTCCAGAAGGCTCCTTAAAGGCACAGGAGGGGAAGAAAGAGTCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGGCTCCTTAAAGGCACAGGAGGGGAAGAAAGAGTCAGGT  50

seq1  GGAAGGGACCTGAGTCAAATCAAGGACAGCACAGCCAAGTGGACAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGACCTGAGTCAAATCAAGGACAGCACAGCCAAGTGGACAGGAGA  100

seq1  ATACAGTAATAATGGATGTAAGTGCTAAGAGAAAGAAACTGCAGAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTAATAATGGATGTAAGTGCTAAGAGAAAGAAACTGCAGAATAAA  150

seq1  AAGTAGAAAGAGTGAAAATTTCCACTCCAGAGTCTCCAATTTCAGTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAAGAGTGAAAATTTCCACTCCAGAGTCTCCAATTTCAGTTATG  200

seq1  TGTCTCTTTAAGAATTTCCATAGTAATTACTCCTACCTTGAAGAAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTTAAGAATTTCCATAGTAATTACTCCTACCTTGAAGAAAAGAA  250

seq1  TGCTTGTCCAGGCTAGAAATGAGATTTGATAAGAGAACAAAGATTCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCCAGGCTAGAAATGAGATTTGATAAGAGAACAAAGATTCAAAG  300

seq1  AGACAATGAAACACCTGGACTTCCATGTTCCTAGAGACAACAAGTCAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGAAACACCTGGACTTCCATGTTCCTAGAGACAACAAGTCAAAC  350

seq1  CAGGGAGCAGTTCTGCAAGTGTCTCTTTTTTATCATAAACCAAAACCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGCAGTTCTGCAAGTGTCTCTTTTTTATCATAAACCAAAACCAAA  400

seq1  GTTTTACTGAGCTTTGATTCTTCATAAAAATTTGTAGGACATAGAGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTGAGCTTTGATTCTTCATAAAAATTTGTAGGACATAGAGATGT  450

seq1  TTTTGCTTACTTATGGAATTATTACTGATTCTTTTTCTCAGTGTTTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTACTTATGGAATTATTACTGATTCTTTTTCTCAGTGTTTGAGT  500

seq1  ATGACAGTTCTGAGTAACACCCTTTTTGCATATTCAGATCACATTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGTTCTGAGTAACACCCTTTTTGCATATTCAGATCACATTTTTAT  550

seq1  CATCTTCTCCCAGAAGTAAAATATTTCTTTCTCATTTGTGATAGTTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTCCCAGAAGTAAAATATTTCTTTCTCATTTGTGATAGTTAATG  600

seq1  TAAAGACATAGTAAACAGAAAGTTTGGAAAGTTTGAACTCTTGTGAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACATAGTAAACAGAAAGTTTGGAAAGTTTGAACTCTTGTGAAATG  650

seq1  GAATCAGGATTATGGTCCTCAAACCTCTGTCACAATTTGGCCATTAACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGGATTATGGTCCTCAAACCTCTGTCACAATTTGGCCATTAACTA  700

seq1  ACTAGTCACTGTTCTATTGCTGTGAAGACACACCATGATCAAGACAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTCACTGTTCTATTGCTGTGAAGACACACCATGATCAAGACAACTT  750

seq1  TTATACAAGAAATCATTTAATTGGGGTCTTACAGCTTTGGAAGGTTGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAAGAAATCATTTAATTGGGGTCTTACAGCTTTGGAAGGTTGGTC  800

seq1  CATTATCATGGCAGGGAGCACAGCAGCACACAAGCAAGCATGATGCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCATGGCAGGGAGCACAGCAGCACACAAGCAAGCATGATGCTGAA  850

seq1  GAATTAGCTGAGAACAATACCCTTATCCTCAGGCAGCAGTCAAAGAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAATTAGCTGAGAACAATACCCTTATCCTCAGGCAGCAGTC-AAGAGAAG  899

seq1  GAAAGACCCTGGGCTAGGTGTGGGCTTT-GGAACCTCCAATCCCAGGTCC  949
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  G-AAGACCCTGGGCTAGGTGTGGGCTTTGGGAACCTCCAATCCCAGGTCC  948

seq1  AGTGACACACTTGCTCCAACAAGTCATACCTACTCCAAACAAGGCCACAT  999
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  AGTGACACACTTGCTCCAACAAGTCATACCTACTCCAAACA--GCCACAT  996

seq1  CCTTCACCAATAATACCATTCCCTAGTGACTAAACATCCAACTGTATGAG  1049
      |||||||  ||||||||||| |||||||||||||||||  ||||||||||
seq2  CCTTCAC--ATAATACCATT-CCTAGTGACTAAACATC--ACTGTATGAG  1041

seq1  CCTATGCAGGCCATTGTTCAAACCACCACATGGACCTCATCT-GTG-TTT  1097
      ||||||||||||| ||||  |||||||||||||| ||||||| ||| |||
seq2  CCTATGCAGGCCA-TGTTTCAACCACCACATGGA-CTCATCTGGTGTTTT  1089

seq1  CATAAAAGCCTCTTCATTAATATATACTATTGATTAATTCATGCTTTGCT  1147
      |||||||| ||| ||||||||||||||||| |||| |||||||  | |||
seq2  CATAAAAG-CTC-TCATTAATATATACTATGGATT-ATTCATGGCTGGCT  1136

seq1  CATG-ATCACCAGTGC--TGTAAC  1168
      |||| |||||||||||  ||||||
seq2  CATGAATCACCAGTGCGTTGTAAC  1160