BAC Information

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BAC

Clone NameB6Ng01-299P13
Chromosome18 (Build37)
Map Location 54,111,139 - 54,291,648
singlet/doubletdoublet
Overlap geneCsnk1g3, EG433184, LOC667360
Upstream geneLOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100
Downstream geneEG545257, LOC100042489, Zfp608, LOC100043089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299P13.bB6Ng01-299P13.g
ACCGA094668GA094669
length1,1311,162
definitionB6Ng01-299P13.b B6Ng01-299P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,290,520 - 54,291,648)(54,111,139 - 54,112,293)
sequence
gaattcaacaaatatgaactgtcagatggtagaagactggcttagcagta
gagacctcggggtcagaatactcaagtttctctggaactacagattccaa
tctgaaaagcttcaactcagtccttcaccctttgaaggcagataaattgg
gtagcccagaattgattggccagggtcccttagatgacatcttaagacca
aaaccccatcttctttcctagaacatcaggcaatttgtggcttattttag
gaacagggattgacactacaacacttgttggatactgaagtgtagagtga
aagaaatgaagagattgatttttccgcctggagtgtattcacatatacga
caccacccaaagcaaacagagagaccagtactgtaacatcaaagtacttt
aacatcaaagcaaaggtggtatatattgctggttaactcaataatgcagg
cttcagtgttcttagtgcacatgtgcaattcaagcagagaaaaatatcac
ccttcaacaactctatggctttctaatggtaaggaccagtacacgacttc
cataaacaaaaccatctgggatatctttagagctggaattgatcattctt
ctcttcttaaaaatcactatagactaatgaaacaacatcattgccttggt
tgtctttcaaactgttctagatttaatattatcaaatgaaacaaatccat
aaactgtaatgattgcaatttagagaatcgggaattcaatctaattgcct
aggcagcatctctggttagtacaaagctgatcaccttccagtatccctct
tatgaatgtctcaacgtagtgaaagagcgcaactcaaagtagaaacccat
tccacctgtttcctaagtgagttttgtacttataaagtccactgggcact
acacaaattgtaggtaaatgttacttattatttctgtgtgggagcgtaag
gaaatattcaattgaacgtgagaaactatcttcagtagtgattgctcttc
tttatggccttttacatattttgaaatatacccatgaaacaacaacccag
catactcaaagttcagaattctcctgagatccatcacttaaaaattgggg
tggtttggtagttaaaagttaactcccgacc

gaattcatcttaaatctgtatttagtttcaaataaatgcttggatatagg
tcccttattcaagaaatgttatttaaccaatgtgaagaacttcactttca
taaatgaaagcaaaaccaaagaatggagtgtgaatacacaacagcatagg
caagctggcaactcacagccagcttatggcaagacctgtgctgattgcat
ttgccattggaaaggcttacatcgtttaaaatagctctttagtagagagg
ttttgaaggaatgtacttagggcttgaagtgacaaatgataatagatagg
aacatttaatacttcgagcaggagctttatattagacaacactaaagttt
ccctgtaatatcactagatttttaaacttaatattatacaaatttggtct
atttcctttaagtaactttttttttttcattttagcttttaccctgtggg
tgttgtctagtaattgaaagatttacttgaataatttttttatccccctc
cagttgagacagggtgtcatgtattcgaggctgaacttaaactctacatt
agagggtggccttgaacctccttatttttctgtctgtctcctgaccagct
gcagtggccctgaagactgagtcgggctccgctctgcccaccaagcaaga
ttctttttgcctttctcgttttgaaatcttatatatctcaaatttgagaa
aggattaggttcatgtaatttaaagtaaatgcggctgttttgttttgttt
ttaactcctgaaacaatgtattattcttagtccttgttggatggcagtag
ctctgctttaggcctgtgaatgtttcatcatacacacaggtacatatact
ctcccacccattgcagttacctcagaaagataaagttgtatatagatggt
tttaacctacgaaaaaagacaaggagtaaaatatatagtgttggaatttt
ttttaaaactataatatttaaaataagcccttgaaaaacatagtttttag
ttataacatgggacatgttgggctctgtggattttaatgttaagtataaa
attagttggatcaaatcaataacttacaaggtaggcctttgacctctcaa
tggaataagaaaaaaatttaaccgtgaggcatggtccaggagctttatat
ggaatcctcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_54290520_54291648
seq2: B6Ng01-299P13.b_47_1177 (reverse)

seq1  GGTCGGGAGTTACTTTTTTACTTACAAACCCACCCCATTTTT-AGTGATG  49
      ||||||||||||  |||| |||  ||||||  ||| |||||| |||||| 
seq2  GGTCGGGAGTTAACTTTTAACTACCAAACCACCCCAATTTTTAAGTGAT-  49

seq1  GGATCTCAGGAGAA-TCTGAACTTTGGAGTATGCTGGGTTG-TGTTTCAT  97
      |||||||||||||| |||||||||| ||||||||||||||| ||||||||
seq2  GGATCTCAGGAGAATTCTGAACTTT-GAGTATGCTGGGTTGTTGTTTCAT  98

seq1  -GGTATATTTCAAAATATGTAAAAAGCCATAAAGAAGAGCAATCACTACT  146
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGGTATATTTCAAAATATGTAAAAGGCCATAAAGAAGAGCAATCACTACT  148

seq1  GAAGATAGTTTCTCACGTTCAATTGAATATTTCCTTACGCTCCCACACAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAGTTTCTCACGTTCAATTGAATATTTCCTTACGCTCCCACACAG  198

seq1  AAATAATAAGTAACATTTACCTACAATTTGTGTAGTGCCCAGTGGACTTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAAGTAACATTTACCTACAATTTGTGTAGTGCCCAGTGGACTTT  248

seq1  ATAAGTACAAAACTCACTTAGGAAACAGGTGGAATGGGTTTCTACTTTGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTACAAAACTCACTTAGGAAACAGGTGGAATGGGTTTCTACTTTGA  298

seq1  GTTGCGCTCTTTCACTACGTTGAGACATTCATAAGAGGGATACTGGAAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCGCTCTTTCACTACGTTGAGACATTCATAAGAGGGATACTGGAAGG  348

seq1  TGATCAGCTTTGTACTAACCAGAGATGCTGCCTAGGCAATTAGATTGAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGCTTTGTACTAACCAGAGATGCTGCCTAGGCAATTAGATTGAAT  398

seq1  TCCCGATTCTCTAAATTGCAATCATTACAGTTTATGGATTTGTTTCATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGATTCTCTAAATTGCAATCATTACAGTTTATGGATTTGTTTCATTT  448

seq1  GATAATATTAAATCTAGAACAGTTTGAAAGACAACCAAGGCAATGATGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATATTAAATCTAGAACAGTTTGAAAGACAACCAAGGCAATGATGTT  498

seq1  GTTTCATTAGTCTATAGTGATTTTTAAGAAGAGAAGAATGATCAATTCCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTAGTCTATAGTGATTTTTAAGAAGAGAAGAATGATCAATTCCA  548

seq1  GCTCTAAAGATATCCCAGATGGTTTTGTTTATGGAAGTCGTGTACTGGTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAAGATATCCCAGATGGTTTTGTTTATGGAAGTCGTGTACTGGTC  598

seq1  CTTACCATTAGAAAGCCATAGAGTTGTTGAAGGGTGATATTTTTCTCTGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCATTAGAAAGCCATAGAGTTGTTGAAGGGTGATATTTTTCTCTGC  648

seq1  TTGAATTGCACATGTGCACTAAGAACACTGAAGCCTGCATTATTGAGTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGCACATGTGCACTAAGAACACTGAAGCCTGCATTATTGAGTTA  698

seq1  ACCAGCAATATATACCACCTTTGCTTTGATGTTAAAGTACTTTGATGTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAATATATACCACCTTTGCTTTGATGTTAAAGTACTTTGATGTTA  748

seq1  CAGTACTGGTCTCTCTGTTTGCTTTGGGTGGTGTCGTATATGTGAATACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTGGTCTCTCTGTTTGCTTTGGGTGGTGTCGTATATGTGAATACA  798

seq1  CTCCAGGCGGAAAAATCAATCTCTTCATTTCTTTCACTCTACACTTCAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCGGAAAAATCAATCTCTTCATTTCTTTCACTCTACACTTCAGT  848

seq1  ATCCAACAAGTGTTGTAGTGTCAATCCCTGTTCCTAAAATAAGCCACAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACAAGTGTTGTAGTGTCAATCCCTGTTCCTAAAATAAGCCACAAA  898

seq1  TTGCCTGATGTTCTAGGAAAGAAGATGGGGTTTTGGTCTTAAGATGTCAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGATGTTCTAGGAAAGAAGATGGGGTTTTGGTCTTAAGATGTCAT  948

seq1  CTAAGGGACCCTGGCCAATCAATTCTGGGCTACCCAATTTATCTGCCTTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGACCCTGGCCAATCAATTCTGGGCTACCCAATTTATCTGCCTTC  998

seq1  AAAGGGTGAAGGACTGAGTTGAAGCTTTTCAGATTGGAATCTGTAGTTCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTGAAGGACTGAGTTGAAGCTTTTCAGATTGGAATCTGTAGTTCC  1048

seq1  AGAGAAACTTGAGTATTCTGACCCCGAGGTCTCTACTGCTAAGCCAGTCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACTTGAGTATTCTGACCCCGAGGTCTCTACTGCTAAGCCAGTCT  1098

seq1  TCTACCATCTGACAGTTCATATTTGTTGAATTC  1129
      |||||||||||||||||||||||||||||||||
seq2  TCTACCATCTGACAGTTCATATTTGTTGAATTC  1131


seq1: chr18_54111139_54112293
seq2: B6Ng01-299P13.g_67_1228

seq1  GAATTCATCTTAAATCTGTATTTAGTTTCAAATAAATGCTTGGATATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTAAATCTGTATTTAGTTTCAAATAAATGCTTGGATATAGG  50

seq1  TCCCTTATTCAAGAAATGTTATTTAACCAATGTGAAGAACTTCACTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTATTCAAGAAATGTTATTTAACCAATGTGAAGAACTTCACTTTCA  100

seq1  TAAATGAAAGCAAAACCAAAGAATGGAGTGTGAATACACAACAGCATAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAAGCAAAACCAAAGAATGGAGTGTGAATACACAACAGCATAGG  150

seq1  CAAGCTGGCAACTCACAGCCAGCTTATGGCAAGACCTGTGCTGATTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGGCAACTCACAGCCAGCTTATGGCAAGACCTGTGCTGATTGCAT  200

seq1  TTGCCATTGGAAAGGCTTACATCGTTTAAAATAGCTCTTTAGTAGAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATTGGAAAGGCTTACATCGTTTAAAATAGCTCTTTAGTAGAGAGG  250

seq1  TTTTGAAGGAATGTACTTAGGGCTTGAAGTGACAAATGATAATAGATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGGAATGTACTTAGGGCTTGAAGTGACAAATGATAATAGATAGG  300

seq1  AACATTTAATACTTCGAGCAGGAGCTTTATATTAGACAACACTAAAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTAATACTTCGAGCAGGAGCTTTATATTAGACAACACTAAAGTTT  350

seq1  CCCTGTAATATCACTAGATTTTTAAACTTAATATTATACAAATTTGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAATATCACTAGATTTTTAAACTTAATATTATACAAATTTGGTCT  400

seq1  ATTTCCTTTAAGTAACTTTTTTTTTTTCATTTTAGCTTTTACCCTGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTTAAGTAACTTTTTTTTTTTCATTTTAGCTTTTACCCTGTGGG  450

seq1  TGTTGTCTAGTAATTGAAAGATTTACTTGAATAATTTTTTTATCCCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTAGTAATTGAAAGATTTACTTGAATAATTTTTTTATCCCCCTC  500

seq1  CAGTTGAGACAGGGTGTCATGTATTCGAGGCTGAACTTAAACTCTACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAGACAGGGTGTCATGTATTCGAGGCTGAACTTAAACTCTACATT  550

seq1  AGAGGGTGGCCTTGAACCTCCTTATTTTTCTGTCTGTCTCCTGACCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTGGCCTTGAACCTCCTTATTTTTCTGTCTGTCTCCTGACCAGCT  600

seq1  GCAGTGGCCCTGAAGACTGAGTCGGGCTCCGCTCTGCCCACCAAGCAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGCCCTGAAGACTGAGTCGGGCTCCGCTCTGCCCACCAAGCAAGA  650

seq1  TTCTTTTTGCCTTTCTCGTTTTGAAATCTTATATATCTCAAATTTGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTGCCTTTCTCGTTTTGAAATCTTATATATCTCAAATTTGAGAA  700

seq1  AGGATTAGGTTCATGTAATTTAAAGTAAATGCGGCTGTTTTGTTTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAGGTTCATGTAATTTAAAGTAAATGCGGCTGTTTTGTTTTGTTT  750

seq1  TTAACTCCTGAAACAATGTATTATTCTTAGTCCTTGTTGGATGGCAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCCTGAAACAATGTATTATTCTTAGTCCTTGTTGGATGGCAGTAG  800

seq1  CTCTGCTTTAGGCCTGTGAATGTTTCATCATACACACAGGTACATATACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTTAGGCCTGTGAATGTTTCATCATACACACAGGTACATATACT  850

seq1  CTCCCACCCATTGCAGTTACCTCAGAAAGATAAAGTTGTATATAGATGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCCATTGCAGTTACCTCAGAAAGATAAAGTTGTATATAGATGGT  900

seq1  TTTAACCTACGAAAAAAGACAAGGAGT-AAATATATAGTGTTTGAATTTT  949
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  TTTAACCTACGAAAAAAGACAAGGAGTAAAATATATAGTGTTGGAATTTT  950

seq1  TTTTAAAACTAT-ATATTTAAAAATAAG-CCTTG-AAAACATAGTTTTTT  996
      |||||||||||| |||||| |||||||| ||||| ||||||||| |||||
seq2  TTTTAAAACTATAATATTT-AAAATAAGCCCTTGAAAAACATAG-TTTTT  998

seq1  AGTTATAACAT-GGACATGTT-GGCTCTGTGATTTTAAATGTTAAGTATA  1044
      ||||||||||| ||||||||| |||||||||  ||| |||||||||||||
seq2  AGTTATAACATGGGACATGTTGGGCTCTGTGGATTTTAATGTTAAGTATA  1048

seq1  AAATTAGTTTGATCAAAATTAAATAACTTACA--GTA-GCCTTTGACTCT  1091
      ||||||||| |||||||  | |||||||||||  ||| |||||||||   
seq2  AAATTAGTTGGATCAAA--TCAATAACTTACAAGGTAGGCCTTTGACCTC  1096

seq1  TAAAATGATAAAGAAAAAAA--TAAACGTGAAGGCAAATGGGTCAAGAG-  1138
      | ||  ||  ||||||||||  ||| |||| ||||  ||||  || ||| 
seq2  TCAATGGAATAAGAAAAAAATTTAACCGTG-AGGC--ATGGTCCAGGAGC  1143

seq1  TTTATATG--ATCCTCAGC  1155
      ||||||||  |||||||||
seq2  TTTATATGGAATCCTCAGC  1162


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