BAC Information

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BAC

Clone NameB6Ng01-301A19
Chromosome18 (Build37)
Map Location 14,383,050 - 14,513,190
singlet/doubletdoublet
Overlap geneLOC100040103, LOC100040391
Upstream geneLOC665379, LOC100040358, Zfp521, LOC100040094
Downstream geneLOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b, LOC669965, Kctd1, EG622268, LOC100040151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301A19.bB6Ng01-301A19.g
ACCGA095465GA095466
length9221,114
definitionB6Ng01-301A19.b B6Ng01-301A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,383,050 - 14,383,701)(14,512,060 - 14,513,190)
sequence
gaattcatccaggatattagtatgaagctatctagccttttaccaacaca
ggcattgaggtaatcccaatctcagaagatggttttcaaatgctgccaat
aatgatgctgctcttcttgtgatttattttcatgttcaatgatatgaaca
ggggagtgcgtgtttgtgcatgtgtgtatgcacatgcacacagtggccag
gaaaggggtcccctggagctggagttgcaggtgaaagagcagtaactatt
cttaccagctgagccatctctcctcccacctctgatattgttcttaaata
tttagtacaattcaccagtgcagcctccatatcttaggcttttcttgttt
tgaaaagtttttttggggttttggaaggcaaaggagtagtttctgaatac
tgattctaactcttactaaccaaagcttctatttcttcatggtcagtcct
caggaagttcttcctgcttgtctaggttatctaatgtgttggttcataat
ttttataacagtctcttacaattctttttatttttatgattccagctgta
atatccttctagtctgctctttgttacttaaacctctctcttctttaccc
aaataatcctgtgagattttgtgattttttttagcttttcacaaaaatat
ttaatgttaacaattattttgttttctccttcctctatctctcctctaac
ctaaccattccctcttcctgttagttagaatttgcttcattctctttcct
tgttcccgcaatctctgttaggagatatttcttttttttttttttttaat
gtatgaattgctcctagaagcttttggttgtattctactacacttcagtg
ggaatctgtgctttttttttttttttagattgtattttcttctaaagaat
atttcctgttctttctttgatt

gaattccattgggcatgcttcctgagacctaaacccacctattagtctcc
accccttaaagcaatcactgtgtcctcacaggcaaggaccaaaccattaa
cacatgggatcaaaactgtaggagcaatgaaaacatcgaatgctgttcta
ttttgtttttcatcagtggctacattgtctttcttaagagagggtgtgtt
ctaccgcaaggaattatattcagcagctaacatcaacaacctggacccaa
tggcttaagcagatgaagagttgattttcctaagcagaaagtaatgaatg
ttagagaatgcctgggaagtcacatggtaagtctataaaattacctcagg
cccaaggttcttcgaagtaacgtctttgaagagatttaactttcagtttt
taatcatatgtctgcgagtatatgcatgaaaatacaggcatgtgcaaggg
taagaagaggggagtagtttcctgaaatggtcatagaatgtgctcctgac
tgctgaagccatctccccatcctcttcagatcccacccttagcacaagct
tctgtcctcagaattccaaaacagtgttgatatccagccatctcctcaac
attcaggagacagggaaagtgcaaacggcaaagctccatcccgagtggtt
tctgtctgtctgcctgcctgtctgtctgtctgtctgtatgtcacaattct
aagatgctctaacaatctttgatattaatttcttggtcaaaacttaaagg
tagggccatgcctagctccaagaaggaccctaagtgcctttaaacagact
atctcagactcctgctgcttagaataatgaggagtttcatttaggaagga
aaggttcacagtggccactggtcatctcagcggtagatgagggagggggg
agagcctttgcccttcacactccttcttatcttcatcagctatagaagca
gacactcactagtgagtaatctccagttacagatatgcttaaaacagcgt
gctctgtcagtgcccaactgcacttcctccttataaattaccatcaacag
atacattttatggtgattatattctcaaatatcacccaattatataccca
gttcatctttattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_14383050_14383701
seq2: B6Ng01-301A19.b_45_696

seq1  GAATTCATCCAGGATATTAGTATGAAGCTATCTAGCCTTTTACCAACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCAGGATATTAGTATGAAGCTATCTAGCCTTTTACCAACACA  50

seq1  GGCATTGAGGTAATCCCAATCTCAGAAGATGGTTTTCAAATGCTGCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGAGGTAATCCCAATCTCAGAAGATGGTTTTCAAATGCTGCCAAT  100

seq1  AATGATGCTGCTCTTCTTGTGATTTATTTTCATGTTCAATGATATGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGCTGCTCTTCTTGTGATTTATTTTCATGTTCAATGATATGAACA  150

seq1  GGGGAGTGCGTGTTTGTGCATGTGTGTATGCACATGCACACAGTGGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTGCGTGTTTGTGCATGTGTGTATGCACATGCACACAGTGGCCAG  200

seq1  GAAAGGGGTCCCCTGGAGCTGGAGTTGCAGGTGAAAGAGCAGTAACTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGTCCCCTGGAGCTGGAGTTGCAGGTGAAAGAGCAGTAACTATT  250

seq1  CTTACCAGCTGAGCCATCTCTCCTCCCACCTCTGATATTGTTCTTAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCAGCTGAGCCATCTCTCCTCCCACCTCTGATATTGTTCTTAAATA  300

seq1  TTTAGTACAATTCACCAGTGCAGCCTCCATATCTTAGGCTTTTCTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTACAATTCACCAGTGCAGCCTCCATATCTTAGGCTTTTCTTGTTT  350

seq1  TGAAAAGTTTTTTTGGGGTTTTGGAAGGCAAAGGAGTAGTTTCTGAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTTTTTTTGGGGTTTTGGAAGGCAAAGGAGTAGTTTCTGAATAC  400

seq1  TGATTCTAACTCTTACTAACCAAAGCTTCTATTTCTTCATGGTCAGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTAACTCTTACTAACCAAAGCTTCTATTTCTTCATGGTCAGTCCT  450

seq1  CAGGAAGTTCTTCCTGCTTGTCTAGGTTATCTAATGTGTTGGTTCATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTTCTTCCTGCTTGTCTAGGTTATCTAATGTGTTGGTTCATAAT  500

seq1  TTTTATAACAGTCTCTTACAATTCTTTTTATTTTTATGATTCCAGCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAACAGTCTCTTACAATTCTTTTTATTTTTATGATTCCAGCTGTA  550

seq1  ATATCCTTCTAGTCTGCTCTTTGTTACTTAAACCTCTCTCTTCTTTACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTTCTAGTCTGCTCTTTGTTACTTAAACCTCTCTCTTCTTTACCC  600

seq1  AAATAATCCTGTGAGATTTTGTGATTTTTTTTAGCTTTTCACAAAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCCTGTGAGATTTTGTGATTTTTTTTAGCTTTTCACAAAAATAT  650

seq1  TT  652
      ||
seq2  TT  652


seq1: chr18_14512060_14513190
seq2: B6Ng01-301A19.g_65_1178 (reverse)

seq1  GAATAAAGATGAAAATTGGTATTATTAAATTTGGTGATATTTGAGAAATA  50
      ||||||||||| || | |||| |||  |||| |||||||||||||||   
seq2  GAATAAAGATG-AACTGGGTA-TAT--AATTGGGTGATATTTGAGAA--T  44

seq1  ATAATCACATTAAAATGTATCTGTTGAATGGTTATTTTAATAAGGAGGAA  100
      ||||||||  |||||||||||||||| ||||| ||||  ||||||||| |
seq2  ATAATCACCATAAAATGTATCTGTTG-ATGGTAATTT--ATAAGGAGG-A  90

seq1  AGTGCAGTTGGGCACTGGAACAGAAGCACGCTGTTTTAAGCATATCTGGT  150
      |||||||||||||||||  |||| ||||||||||||||||||||||| ||
seq2  AGTGCAGTTGGGCACTG--ACAG-AGCACGCTGTTTTAAGCATATCT-GT  136

seq1  AACTGGAGAATTACTCACTAGTGAGTGTCTGCTTCTATAGCTGATGAAGA  200
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  AACTGGAG-ATTACTCACTAGTGAGTGTCTGCTTCTATAGCTGATGAAG-  184

seq1  ATAAGAAGGAGTGTGAAGGGCAAAGGCTCTCCCCCCTCCCTCATCTACCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAGGAGTGTGAAGGGCAAAGGCTCTCCCCCCTCCCTCATCTACCG  234

seq1  CTGAGATGACCAGTGGCCACTGTGAACCTTTCCTTCCTAAATGAAACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGACCAGTGGCCACTGTGAACCTTTCCTTCCTAAATGAAACTCC  284

seq1  TCATTTATTCTAAGCAGCAGGAGTCTGAGATAGTCTGTTTAAAGGCACTT  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-TTATTCTAAGCAGCAGGAGTCTGAGATAGTCTGTTTAAAGGCACTT  333

seq1  AGGGTCCTTCTTGGAGCTAGGCATGGCCCTACCTTTAAGTTTTGACCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTTCTTGGAGCTAGGCATGGCCCTACCTTTAAGTTTTGACCAAG  383

seq1  AAATTAATATCAAAGATTGTTAGAGCATCTTAGAATTGTGACATACAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATATCAAAGATTGTTAGAGCATCTTAGAATTGTGACATACAGAC  433

seq1  AGACAGACAGACAGGCAGGCAGACAGACAGAAACCACTCGGGATGGAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACAGACAGGCAGGCAGACAGACAGAAACCACTCGGGATGGAGCT  483

seq1  TTGCCGTTTGCACTTTCCCTGTCTCCTGAATGTTGAGGAGATGGCTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGTTTGCACTTTCCCTGTCTCCTGAATGTTGAGGAGATGGCTGGAT  533

seq1  ATCAACACTGTTTTGGAATTCTGAGGACAGAAGCTTGTGCTAAGGGTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACACTGTTTTGGAATTCTGAGGACAGAAGCTTGTGCTAAGGGTGGG  583

seq1  ATCTGAAGAGGATGGGGAGATGGCTTCAGCAGTCAGGAGCACATTCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGAGGATGGGGAGATGGCTTCAGCAGTCAGGAGCACATTCTATG  633

seq1  ACCATTTCAGGAAACTACTCCCCTCTTCTTACCCTTGCACATGCCTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCAGGAAACTACTCCCCTCTTCTTACCCTTGCACATGCCTGTAT  683

seq1  TTTCATGCATATACTCGCAGACATATGATTAAAAACTGAAAGTTAAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCATATACTCGCAGACATATGATTAAAAACTGAAAGTTAAATCT  733

seq1  CTTCAAAGACGTTACTTCGAAGAACCTTGGGCCTGAGGTAATTTTATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGACGTTACTTCGAAGAACCTTGGGCCTGAGGTAATTTTATAGA  783

seq1  CTTACCATGTGACTTCCCAGGCATTCTCTAACATTCATTACTTTCTGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCATGTGACTTCCCAGGCATTCTCTAACATTCATTACTTTCTGCTT  833

seq1  AGGAAAATCAACTCTTCATCTGCTTAAGCCATTGGGTCCAGGTTGTTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATCAACTCTTCATCTGCTTAAGCCATTGGGTCCAGGTTGTTGAT  883

seq1  GTTAGCTGCTGAATATAATTCCTTGCGGTAGAACACACCCTCTCTTAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTGCTGAATATAATTCCTTGCGGTAGAACACACCCTCTCTTAAGA  933

seq1  AAGACAATGTAGCCACTGATGAAAAACAAAATAGAACAGCATTCGATGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATGTAGCCACTGATGAAAAACAAAATAGAACAGCATTCGATGTT  983

seq1  TTCATTGCTCCTACAGTTTTGATCCCATGTGTTAATGGTTTGGTCCTTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCTCCTACAGTTTTGATCCCATGTGTTAATGGTTTGGTCCTTGC  1033

seq1  CTGTGAGGACACAGTGATTGCTTTAAGGGGTGGAGACTAATAGGTGGGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGGACACAGTGATTGCTTTAAGGGGTGGAGACTAATAGGTGGGTT  1083

seq1  TAGGTCTCAGGAAGCATGCCCAATGGAATTC  1131
      |||||||||||||||||||||||||||||||
seq2  TAGGTCTCAGGAAGCATGCCCAATGGAATTC  1114


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