BAC Information

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BAC

Clone NameB6Ng01-301I10
Chromosome18 (Build37)
Map Location 49,683,352 - 49,820,342
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545470
Downstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301I10.bB6Ng01-301I10.g
ACCGA095816GA095817
length1,1841,012
definitionB6Ng01-301I10.b B6Ng01-301I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,819,152 - 49,820,342)(49,683,352 - 49,684,367)
sequence
gaattcaatctactctctttttacttccctgattcactcaactatgtgag
gaatcctagaaagcaaattcttggtcttttgctagagggttgccatttgg
ttatggtatgagggacatcttttagttccgtgcaatgaagatgaaaccct
tcaagtaatctgcatacattaagccatgaacaaacttttactgcctcttg
ttccaaattctttttacaagtctcagttgtaaattgacacgttccctctg
tggcttcttcatttctatcatcatctccccacagcaggcaagatttctta
agccttcttctgtcactcttgtatgcaactggcaatatgaaaatatttat
atgattttttgcattcataaatatgcaaatgtatatgtatttgaagggat
tcttaaaatatttactgattgagacaggggatcatggcaggaaagaactg
ctcatttcagggacatgttattaaatttctgaaaaatcattgcatatgaa
gataggattggctgagtcttccttaagtaacactaaatatttgcaggaag
aaaacacaacaaaacaacaaacacattagattaatcacacgaatctctgg
aaatacacttctgaatagacatttcatgagtcatatttagcatcaatttt
tgaggacaatttcttataattaagaatactcccaaataaaacatgctgat
ttgagtttttaaaatctttaagagtttccctcccccctcttccttgcatt
aagttttaatgtttgattttgagtaattctggacacgaagccttcttttg
gagtgatatattggactaaatggttttaagtccctcttaaatctaatatt
ctaacattttgaaatagaatttaaaggtacaaagtgccatagaaaagtcg
ttttgaatttgcaagttgggccttagagtagcagtcatgctgtgtaactt
tattttttattagttgtagctcagtttttgtcacataccccattatggat
gggttcctcctaggacattacaaatccttgaaactaaaaatcaggtctgt
gttcgttacaaacaagctcttaagcacagttgaccttctgtggtcttgtg
aatggagtctcagctgaaaaaaaattggcatagtaaaagcttcctgatgg
taagtggacaacagtttaatttccaaaatccagc

gaattccactcaccagtgatcctaagatcctgggcatgctagggcacctg
gggtgtagcagatctaatactcttactacaccctcttctgccatgttccc
tgaaccttcagtgatatagctatcctatttaggtcctagggctaagcata
tcactttctagaggccaaacctctgccacagttgtgttttagcctatatg
ccaagctcacattgatgatgtgtagttttttttacaaatgccaaggtaga
aagtacattaaaatggtaagactcggagaaagctttaccatgcaattttt
tatggatgtttataaggttcttttcagagactacagtggcttatataaat
agctaagtgtttgtgatgagaaatgcaaaccctgtcattgtcactgaaat
aatctatgtgatttaattccatgctttgctccaaggaaagaggaacagag
aaaatgagatcattaaagagaatagaatgtagactgccacatcaaataag
aagaagtgagaagcctgtgttttcatcccagtggaccaagaggaaaggag
gaaagaagcaaggaaggaaagcagttttacctttttcactaatcccatat
ttttcagtgaacaccactcttttaacttctctggtaaattccaaaacctg
ctttctggatagttccatgtgaacttatcaccactgcaccatatctagca
tactatgtgctacatgctaaattaagtctctcttatccaagaatcatgtg
ttgtgttgttgttgttgtattatatattatatattatattatatatatta
tatgagactaacatttcccaagcaacaagaagagcccattcatagccaca
agaagaaccaataatagaattcctactgggcttcctcactggtctaccac
atagcttgtcacccataacccttatagattcagcttctgcaccacacttc
aatagatttagcttctcatacctcaaaggataatgtcacatctggttcca
gcacatcatagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49819152_49820342
seq2: B6Ng01-301I10.b_46_1229 (reverse)

seq1  GCTTGATTTTG--AATTAAACTGTTGT-CACTACACATCCAGAAACTTTT  47
      ||| |||||||  |||||||||||||| ||||   ||||  ||| |  ||
seq2  GCTGGATTTTGGAAATTAAACTGTTGTCCACTTACCATCAGGAAGC--TT  48

seq1  TTACTATTGCAAATTTTTTCTCAACCTGAGACTCCA-TCACAAGACCACA  96
      |||||| ||| |||||||| || | ||||||||||| |||||||||||||
seq2  TTACTA-TGCCAATTTTTTTTC-AGCTGAGACTCCATTCACAAGACCACA  96

seq1  CGAAGTTCAACTGTGCTTTAAGAGGCTTGGTTTGGTAACG-ACACAGAAC  145
       |||| |||||||||| |||||| |||||  || |||||| |||||||  
seq2  -GAAGGTCAACTGTGC-TTAAGA-GCTTG--TTTGTAACGAACACAGA--  139

seq1  CTTGATTTTTAAGTTTCAAGGGATTTGTAATGTCCCTAGGAGGAA-CCAT  194
      | |||||||| |||||||| ||||||||||||| ||||||||||| ||||
seq2  CCTGATTTTT-AGTTTCAA-GGATTTGTAATGT-CCTAGGAGGAACCCAT  186

seq1  CCATAATGGGGTTATGTGACAAAAACTGAGCTACAACTAAT-AAAAATAA  243
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  CCATAATGGGG-TATGTGACAAAAACTGAGCTACAACTAATAAAAAATAA  235

seq1  AGTTACACAGCATGACTGCTACTCTAAGGCCCAACTTGCAAATTCAAAAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACACAGCATGACTGCTACTCTAAGGCCCAACTTGCAAATTCAAAAC  285

seq1  GACTTTTCTATGGCACTTTGTACCTTTAAATTCTATTTC-AAATGTTAGA  342
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GACTTTTCTATGGCACTTTGTACCTTTAAATTCTATTTCAAAATGTTAGA  335

seq1  ATATTAGATTTAAGAGGGACTTAAAACCATTTAGTCCAATATATCACTCC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGATTTAAGAGGGACTTAAAACCATTTAGTCCAATATATCACTCC  385

seq1  AAAAGAAGGCTTCGTGTCCAGAATTACTCAAAATCAAACATTAAAACTTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGGCTTCGTGTCCAGAATTACTCAAAATCAAACATTAAAACTTA  435

seq1  ATGCAAGGAAGAGGGGGGAGGGAAACTCTTAAAGATTTTAAAAACTCAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGGAAGAGGGGGGAGGGAAACTCTTAAAGATTTTAAAAACTCAAA  485

seq1  TCAGCATGTTTTATTTGGGAGTATTCTTAATTATAAGAAATTGTCCTCAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGTTTTATTTGGGAGTATTCTTAATTATAAGAAATTGTCCTCAA  535

seq1  AAATTGATGCTAAATATGACTCATGAAATGTCTATTCAGAAGTGTATTTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATGCTAAATATGACTCATGAAATGTCTATTCAGAAGTGTATTTC  585

seq1  CAGAGATTCGTGTGATTAATCTAATGTGTTTGTTGTTTTGTTGTGTTTTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTCGTGTGATTAATCTAATGTGTTTGTTGTTTTGTTGTGTTTTC  635

seq1  TTCCTGCAAATATTTAGTGTTACTTAAGGAAGACTCAGCCAATCCTATCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCAAATATTTAGTGTTACTTAAGGAAGACTCAGCCAATCCTATCT  685

seq1  TCATATGCAATGATTTTTCAGAAATTTAATAACATGTCCCTGAAATGAGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGCAATGATTTTTCAGAAATTTAATAACATGTCCCTGAAATGAGC  735

seq1  AGTTCTTTCCTGCCATGATCCCCTGTCTCAATCAGTAAATATTTTAAGAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTCCTGCCATGATCCCCTGTCTCAATCAGTAAATATTTTAAGAA  785

seq1  TCCCTTCAAATACATATACATTTGCATATTTATGAATGCAAAAAATCATA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCAAATACATATACATTTGCATATTTATGAATGCAAAAAATCATA  835

seq1  TAAATATTTTCATATTGCCAGTTGCATACAAGAGTGACAGAAGAAGGCTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTTCATATTGCCAGTTGCATACAAGAGTGACAGAAGAAGGCTT  885

seq1  AAGAAATCTTGCCTGCTGTGGGGAGATGATGATAGAAATGAAGAAGCCAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCTTGCCTGCTGTGGGGAGATGATGATAGAAATGAAGAAGCCAC  935

seq1  AGAGGGAACGTGTCAATTTACAACTGAGACTTGTAAAAAGAATTTGGAAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAACGTGTCAATTTACAACTGAGACTTGTAAAAAGAATTTGGAAC  985

seq1  AAGAGGCAGTAAAAGTTTGTTCATGGCTTAATGTATGCAGATTACTTGAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCAGTAAAAGTTTGTTCATGGCTTAATGTATGCAGATTACTTGAA  1035

seq1  GGGTTTCATCTTCATTGCACGGAACTAAAAGATGTCCCTCATACCATAAC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCATCTTCATTGCACGGAACTAAAAGATGTCCCTCATACCATAAC  1085

seq1  CAAATGGCAACCCTCTAGCAAAAGACCAAGAATTTGCTTTCTAGGATTCC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCAACCCTCTAGCAAAAGACCAAGAATTTGCTTTCTAGGATTCC  1135

seq1  TCACATAGTTGAGTGAATCAGGGAAGTAAAAAGAGAGTAGATTGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAGTTGAGTGAATCAGGGAAGTAAAAAGAGAGTAGATTGAATTC  1184


seq1: chr18_49683352_49684367
seq2: B6Ng01-301I10.g_68_1079

seq1  GAATTCCACTCACCAGTGATCCTAAGATCCTGGGCATGCTAGGGCACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCACCAGTGATCCTAAGATCCTGGGCATGCTAGGGCACCTG  50

seq1  GGGTGTAGCAGATCTAATACTCTTACTACACCCTCTTCTGCCATGTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTAGCAGATCTAATACTCTTACTACACCCTCTTCTGCCATGTTCCC  100

seq1  TGAACCTTCAGTGATATAGCTATCCTATTTAGGTCCTAGGGCTAAGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTTCAGTGATATAGCTATCCTATTTAGGTCCTAGGGCTAAGCATA  150

seq1  TCACTTTCTAGAGGCCAAACCTCTGCCACAGTTGTGTTTTAGCCTATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCTAGAGGCCAAACCTCTGCCACAGTTGTGTTTTAGCCTATATG  200

seq1  CCAAGCTCACATTGATGATGTGTAGTTTTTTTTACAAATGCCAAGGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTCACATTGATGATGTGTAGTTTTTTTTACAAATGCCAAGGTAGA  250

seq1  AAGTACATTAAAATGGTAAGACTCGGAGAAAGCTTTACCATGCAATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATTAAAATGGTAAGACTCGGAGAAAGCTTTACCATGCAATTTTT  300

seq1  TATGGATGTTTATAAGGTTCTTTTCAGAGACTACAGTGGCTTATATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGTTTATAAGGTTCTTTTCAGAGACTACAGTGGCTTATATAAAT  350

seq1  AGCTAAGTGTTTGTGATGAGAAATGCAAACCCTGTCATTGTCACTGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGTGTTTGTGATGAGAAATGCAAACCCTGTCATTGTCACTGAAAT  400

seq1  AATCTATGTGATTTAATTCCATGCTTTGCTCCAAGGAAAGAGGAACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATGTGATTTAATTCCATGCTTTGCTCCAAGGAAAGAGGAACAGAG  450

seq1  AAAATGAGATCATTAAAGAGAATAGAATGTAGACTGCCACATCAAATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGATCATTAAAGAGAATAGAATGTAGACTGCCACATCAAATAAG  500

seq1  AAGAAGTGAGAAGCCTGTGTTTTCATCCCAGTGGACCAAGAGGAAAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGAGAAGCCTGTGTTTTCATCCCAGTGGACCAAGAGGAAAGGAG  550

seq1  GAAAGAAGCAAGGAAGGAAAGCAGTTTTACCTTTTTCACTAATCCCATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGCAAGGAAGGAAAGCAGTTTTACCTTTTTCACTAATCCCATAT  600

seq1  TTTTCAGTGAACACCACTCTTTTAACTTCTCTGGTAAATTCCAAAACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTGAACACCACTCTTTTAACTTCTCTGGTAAATTCCAAAACCTG  650

seq1  CTTTCTGGATAGTTCCATGTGAACTTATCACCACTGCACCATATCTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGATAGTTCCATGTGAACTTATCACCACTGCACCATATCTAGCA  700

seq1  TACTATGTGCTACATGCTAAATTAAGTCTCTCTTATCCAAGAATCATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTGCTACATGCTAAATTAAGTCTCTCTTATCCAAGAATCATGTG  750

seq1  TTGTTGTTGTTGTTGTTGTTATTATTATTATTATTATTATTATTATTATA  800
      ||| |||||||||||||| ||||||   ||||||   ||||| |||||||
seq2  TTG-TGTTGTTGTTGTTG-TATTAT--ATATTAT--ATATTA-TATTATA  793

seq1  TTATTATTATATTGAGACTAACATTTCCCAAGCCACAAGAAGAG-CCAAT  849
      |   ||||||| ||||||||||||||||||||| |||||||||| ||| |
seq2  T--ATATTATA-TGAGACTAACATTTCCCAAGCAACAAGAAGAGCCCATT  840

seq1  CATAGCCACAAGAAGAACCAATAATAGAA-TCCTACTTGGCTT-CTCACT  897
      ||||||||||||||||||||||||||||| ||||||| ||||| ||||||
seq2  CATAGCCACAAGAAGAACCAATAATAGAATTCCTACTGGGCTTCCTCACT  890

seq1  -GTCTA-CACATAGCTTGTCA-CCATA--CCCTATAGATTCAGCTTCCTG  942
       ||||| |||||||||||||| |||||  || |||||||||||||| |||
seq2  GGTCTACCACATAGCTTGTCACCCATAACCCTTATAGATTCAGCTT-CTG  939

seq1  CCACCACAC-TCTATAGATTTAGCTTCTCCATAACCTCAGAGGAT-ATGT  990
       |||||||| || ||||||||||||||| ||| |||||| ||||| ||||
seq2  -CACCACACTTCAATAGATTTAGCTTCT-CAT-ACCTCAAAGGATAATGT  986

seq1  CACATCTGTTTTCAGCACATCATAGT  1016
      |||||||| || ||||||||||||||
seq2  CACATCTGGTTCCAGCACATCATAGT  1012


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