BAC Information

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BAC

Clone NameB6Ng01-303D02
Chromosome18 (Build37)
Map Location 45,710,648 - 45,711,831
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
Downstream geneKcnn2, Trim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303D02.bB6Ng01-303D02.g
ACCGA097053GA097054
length1,177856
definitionB6Ng01-303D02.b B6Ng01-303D02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttgtgtgtaactacatattttaacaacatgaggcaagactga
cataactgaaaagacaaccgaataattcaacagtgataagtattttgatg
cagccaggagacatgttactaagaagaaaacttccggttctataaaggta
gagttacagatggttgtgagccatccaatctgggtactgggagtagaact
cgggtcctctggaagaatggcatgcactgtctgctgagccatttctacag
ccccatggaattgaaattattgccctagattcaactgtatagataagtgt
tctctttgccactttgctttgaatccttcattcctcttcccaccctcaga
atattctacaaagtcctataattcctctgcaaatattgcatgtatttttt
agttgtatcacaattaggacatataattataataatggctgcttttaatt
tatttctatatgcacagtaatgatttaatgtttattagagataaaaaaac
aacattgtatcttggtcactaaatactgtgaaaaatactgttatatagca
ctctgttacaaaaaccctcagtgtctacagtttgaccaaacactaagaat
aaactaaagttcttagtagtgccaatgcatgccaagaaacttatcatggt
tactcttaagtgagccacattctttcagtagtcctaattaattttctgac
ctactgcatatcaaaagctgaaaataaagtcaagaagacagagtttttga
gtctgataaaatgcactaacaacaaggaatatgattaagaaactaactgc
aatggtaaacaatatttaatgcccattacaatttgtagagcatcagaact
cacaacacaattagagacaagtggtcttttatacatgattgaattcaagt
gtcattcttggactcatgattaaatttgacatatgtgccagtggtaatcc
ctaggtgatcaagaaaacctttaaaaatagtgaggtgagtttatatctga
gcactagagagtgagcaaggcgtagatttctgtgaggcttgccagctgga
ctacactgtgaacctgtccatacagtctcactgacagactcctcagtgtt
gacctggaaccaagagaaaacaatggatatttcgaattgagccagaaatc
ctagtaaacctcaactcccacacagaa

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaaat
tccacttcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaaatgaatttatgaaattcctagccaaa
tggatggacctggagggcatcatcctgagtgaggtaactcattcacaaag
gaactcacacaatatgtactcactgataagtggatatttagcccaaaacc
taggatacccaagatataagatacaattccctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctacttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagttttggagctgagatg
aaaggatggaccatgtagagactgccatatccagggctccaccccataat
cagcatccaaacgctgacaccattgcatacactagcaagatttttatcga
aaggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45710648_45711831
seq2: B6Ng01-303D02.b_46_1222 (reverse)

seq1  TTCTGTGTGTGGAGTTGAGGTTTCCTGGGTTTTCTGTGCTCCATATTCG-  49
      ||||||||| ||||||||||||| || || |||||| ||||   ||||| 
seq2  TTCTGTGTG-GGAGTTGAGGTTTACTAGGATTTCTG-GCTC--AATTCGA  46

seq1  AATATCCATTGTTTTTTCTCTTG--TTCAGTTC-ACACTGAGGAGTCTTG  96
      |||||||||||  ||||||||||  | ||| || ||||||||||||| ||
seq2  AATATCCATTG--TTTTCTCTTGGTTCCAGGTCAACACTGAGGAGTC-TG  93

seq1  TCAGTGAGACTGTATGGACAGGGTTTCACAGTGTAGTCCAGGCTGGCCAA  146
      ||||||||||||||||||||||  |||||||||||||||| ||||| |||
seq2  TCAGTGAGACTGTATGGACAGG--TTCACAGTGTAGTCCA-GCTGG-CAA  139

seq1  GCCTCACAGAAATCTACCGGCCTTGCCCACTCTCTAGTGCTCAGATTATA  196
      |||||||||||||||||  ||||||| |||||||||||||||||| ||||
seq2  GCCTCACAGAAATCTAC--GCCTTGCTCACTCTCTAGTGCTCAGA-TATA  186

seq1  AACCTCACCTCACTATTTT--AAGGTTTTCTTGATCACCTA-GGATTACC  243
      || ||||||||||||||||  |||||||||||||||||||| ||||||||
seq2  AA-CTCACCTCACTATTTTTAAAGGTTTTCTTGATCACCTAGGGATTACC  235

seq1  ACTGGCACATATGTC-AATTTAATCATGAGTCCAAGAATGACACTTGAAT  292
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTGGCACATATGTCAAATTTAATCATGAGTCCAAGAATGACACTTGAAT  285

seq1  TCAATCATGTATAAAAGACCACTTGTCTCTAATTGTGTTGTGAGTTCTGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCATGTATAAAAGACCACTTGTCTCTAATTGTGTTGTGAGTTCTGA  335

seq1  TGCTCTACAAATTGTAATGGGCATTAAATATTGTTTACCATTGCAGTTAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTACAAATTGTAATGGGCATTAAATATTGTTTACCATTGCAGTTAG  385

seq1  TTTCTTAATCATATTCCTTGTTGTTAGTGCATTTTATCAGACTCAAAAAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAATCATATTCCTTGTTGTTAGTGCATTTTATCAGACTCAAAAAC  435

seq1  TCTGTCTTCTTGACTTTATTTTCAGCTTTTGATATGCAGTAGGTCAGAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTCTTGACTTTATTTTCAGCTTTTGATATGCAGTAGGTCAGAAA  485

seq1  ATTAATTAGGACTACTGAAAGAATGTGGCTCACTTAAGAGTAACCATGAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTAGGACTACTGAAAGAATGTGGCTCACTTAAGAGTAACCATGAT  535

seq1  AAGTTTCTTGGCATGCATTGGCACTACTAAGAACTTTAGTTTATTCTTAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTTGGCATGCATTGGCACTACTAAGAACTTTAGTTTATTCTTAG  585

seq1  TGTTTGGTCAAACTGTAGACACTGAGGGTTTTTGTAACAGAGTGCTATAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTCAAACTGTAGACACTGAGGGTTTTTGTAACAGAGTGCTATAT  635

seq1  AACAGTATTTTTCACAGTATTTAGTGACCAAGATACAATGTTGTTTTTTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATTTTTCACAGTATTTAGTGACCAAGATACAATGTTGTTTTTTT  685

seq1  ATCTCTAATAAACATTAAATCATTACTGTGCATATAGAAATAAATTAAAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTAATAAACATTAAATCATTACTGTGCATATAGAAATAAATTAAAA  735

seq1  GCAGCCATTATTATAATTATATGTCCTAATTGTGATACAACTAAAAAATA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCATTATTATAATTATATGTCCTAATTGTGATACAACTAAAAAATA  785

seq1  CATGCAATATTTGCAGAGGAATTATAGGACTTTGTAGAATATTCTGAGGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATATTTGCAGAGGAATTATAGGACTTTGTAGAATATTCTGAGGG  835

seq1  TGGGAAGAGGAATGAAGGATTCAAAGCAAAGTGGCAAAGAGAACACTTAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGAGGAATGAAGGATTCAAAGCAAAGTGGCAAAGAGAACACTTAT  885

seq1  CTATACAGTTGAATCTAGGGCAATAATTTCAATTCCATGGGGCTGTAGAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAGTTGAATCTAGGGCAATAATTTCAATTCCATGGGGCTGTAGAA  935

seq1  ATGGCTCAGCAGACAGTGCATGCCATTCTTCCAGAGGACCCGAGTTCTAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGCAGACAGTGCATGCCATTCTTCCAGAGGACCCGAGTTCTAC  985

seq1  TCCCAGTACCCAGATTGGATGGCTCACAACCATCTGTAACTCTACCTTTA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTACCCAGATTGGATGGCTCACAACCATCTGTAACTCTACCTTTA  1035

seq1  TAGAACCGGAAGTTTTCTTCTTAGTAACATGTCTCCTGGCTGCATCAAAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCGGAAGTTTTCTTCTTAGTAACATGTCTCCTGGCTGCATCAAAA  1085

seq1  TACTTATCACTGTTGAATTATTCGGTTGTCTTTTCAGTTATGTCAGTCTT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATCACTGTTGAATTATTCGGTTGTCTTTTCAGTTATGTCAGTCTT  1135

seq1  GCCTCATGTTGTTAAAATATGTAGTTACACACAAGTGAATTC  1184
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATGTTGTTAAAATATGTAGTTACACACAAGTGAATTC  1177


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