BAC Information

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BAC

Clone NameB6Ng01-304K11
Chromosome18 (Build37)
Map Location 6,652,646 - 6,653,506
singlet/doubletsinglet
Overlap genenone
Upstream geneZeb1, EG664925, Arhgap12, Kif5b, LOC100039469, EG621100, LOC665028, EG622152, Epc1, LOC665047, 4921524L21Rik
Downstream geneLOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4, Mpp7, EG622384, LOC100039562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304K11.bB6Ng01-304K11.g
ACCGA098155GA098156
length1,230975
definitionB6Ng01-304K11.b B6Ng01-304K11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccataaatatatacaatgtcttttgatcaaatggactcctctttc
atctccagctttctcccaccccttctttacctctcaattctatgtgctgt
cagttaaaaacaaagacataaacaaaaaacaaaacaaaaaaacctgagtc
cacttagcccttgtatgtgcattggtgtaggattacctagtggaacatgg
gtagccattcagaaattgcacccctgagcaaaatgtagtcttcctcaccc
agcagtcatcagttgcccctccctggacatgctgagagttttggagcttg
atcttatgcaagtcttgtgcaagcagtctcaaacactgtctttcatctat
gcaatggtgtcatcatgtccaacaaatgttttgctgaagacatccattac
ccctggctcttatattctttctgtcatttctttaatgacctttgaaccct
gggggaagggtgtgatataggtgtcttatttagagctgagtactcctgga
aagatgtactccaagttgtcaacattttaaacagtgaattattttatatt
gttatgtgactcattgggttatctaattgagtcagtttggtagctgctgg
tttttgagaattaagccagttcatgcgaactgtcacatatatgtaaacag
agtggttcattctcctctaattatgtgaaagctacataggggtttcttct
gtatttttcctgatattagcaaattgtaaatttaatacttttcactttga
tttgtaacttgcagccctccttcctctgcttcttgaattcaagaattgca
gatctccctcccttcctccctccttccccttctatcctgcacctttttct
cattcctccctccttccgtctcctttctttctctacctctctctcttttt
gctagaggtttatcaaatttattaatcttttcaaagagttatcttttgtg
ttactggtgttctttgagttttcaattttcacttacattaataacttctt
atcttttaatgtttcctggcttctaacttgctttgagaataattttgtcc
ttgcttttataagttctgtataaagaaaatgtggtgcccggtttggctgc
attctcccagtacaagcacattgaaagctagaaataacttgtccctgctt
cacaagcttgcaattgacatccagagacttgaagagtgagtatatttctc
agatgagtaattatctacacaagagaacct
gaattcaatgaaaataaaggcacagcataattaaacgtatggcacacaat
gaaagcactgctaagaggaaagttaataaccatgagtccctccatgtgta
ctctttggttggtggtttagtccctgggagctctggggagtctggttgtt
gatattgtctttcagacagagttgcaaaccccttcacctccttcagtcct
ttctccaactcctctattggggaccctgtactcagtgcaattgtttgatg
caagcatccgactctgtatttgtaaggctctgagaagcctctcaggagac
agctatatcaggctcctttcagcaaaatatttctttttttttttaattag
atattttcttctttcttattagatattttctttatttacatttcaaatgc
tatcccgaaagttccctatatcctccccctgccctgctcccctacccact
cactcccacttcttggccctggtgttcccctgtactgaggcatataaagt
ttgcaagaccaagaggcctctcttccaaatgatggccaactaggccatct
tctgctacatatgcagctagagacatgagctctgggggtactggttagtt
catatttttgttccaccaatagggttgcagatcccttcagctccttgggt
aatttttctagctcctccactgggggccctgtgttccatcctatagatga
ctgtgagcgtctacttctgtatttgccaggcactggcataccctcacttg
agatagctatatcagggtcctttcagcaaaatcttgctggcatatgcaat
agtgtctgggtttggtggctgattatgggatagatctcagggtggggtat
tctctggattgtccatccttttgtcttagctccaaactttgtctctttaa
ctccttccatgggtgtttgttccctattctaaggaggaatgaagtatcca
cactttggtcttcattctcttgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_6652646_6653506
seq2: B6Ng01-304K11.g_66_926

seq1  GAATTCAATGAAAATAAAGGCACAGCATAATTAAACGTATGGCACACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAAAATAAAGGCACAGCATAATTAAACGTATGGCACACAAT  50

seq1  GAAAGCACTGCTAAGAGGAAAGTTAATAACCATGAGTCCCTCCATGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCACTGCTAAGAGGAAAGTTAATAACCATGAGTCCCTCCATGTGTA  100

seq1  CTCTTTGGTTGGTGGTTTAGTCCCTGGGAGCTCTGGGGAGTCTGGTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGGTTGGTGGTTTAGTCCCTGGGAGCTCTGGGGAGTCTGGTTGTT  150

seq1  GATATTGTCTTTCAGACAGAGTTGCAAACCCCTTCACCTCCTTCAGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGTCTTTCAGACAGAGTTGCAAACCCCTTCACCTCCTTCAGTCCT  200

seq1  TTCTCCAACTCCTCTATTGGGGACCCTGTACTCAGTGCAATTGTTTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAACTCCTCTATTGGGGACCCTGTACTCAGTGCAATTGTTTGATG  250

seq1  CAAGCATCCGACTCTGTATTTGTAAGGCTCTGAGAAGCCTCTCAGGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATCCGACTCTGTATTTGTAAGGCTCTGAGAAGCCTCTCAGGAGAC  300

seq1  AGCTATATCAGGCTCCTTTCAGCAAAATATTTCTTTTTTTTTTTAATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATATCAGGCTCCTTTCAGCAAAATATTTCTTTTTTTTTTTAATTAG  350

seq1  ATATTTTCTTCTTTCTTATTAGATATTTTCTTTATTTACATTTCAAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTTCTTTCTTATTAGATATTTTCTTTATTTACATTTCAAATGC  400

seq1  TATCCCGAAAGTTCCCTATATCCTCCCCCTGCCCTGCTCCCCTACCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCGAAAGTTCCCTATATCCTCCCCCTGCCCTGCTCCCCTACCCACT  450

seq1  CACTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGAGGCATATAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGAGGCATATAAAGT  500

seq1  TTGCAAGACCAAGAGGCCTCTCTTCCAAATGATGGCCAACTAGGCCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGACCAAGAGGCCTCTCTTCCAAATGATGGCCAACTAGGCCATCT  550

seq1  TCTGCTACATATGCAGCTAGAGACATGAGCTCTGGGGGTACTGGTTAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTACATATGCAGCTAGAGACATGAGCTCTGGGGGTACTGGTTAGTT  600

seq1  CATATTTTTGTTCCACCAATAGGGTTGCAGATCCCTTCAGCTCCTTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTTGTTCCACCAATAGGGTTGCAGATCCCTTCAGCTCCTTGGGT  650

seq1  AATTTTTCTAGCTCCTCCACTGGGGGCCCTGTGTTCCATCCTATAGATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTAGCTCCTCCACTGGGGGCCCTGTGTTCCATCCTATAGATGA  700

seq1  CTGTGAGCGTCTACTTCTGTATTTGCCAGGCACTGGCATACCCTCACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCGTCTACTTCTGTATTTGCCAGGCACTGGCATACCCTCACTTG  750

seq1  AGATAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTGGCATATGCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTGGCATATGCAAT  800

seq1  AGTGTCTGGGTTTGGTGGCTGATTATGGGATAGATCTCAGGGTGGGGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGGGTTTGGTGGCTGATTATGGGATAGATCTCAGGGTGGGGTAT  850

seq1  TCTCTGGATTG  861
      |||||||||||
seq2  TCTCTGGATTG  861