BAC Information

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BAC

Clone NameB6Ng01-305C14
Chromosome18 (Build37)
Map Location 51,194,819 - 51,383,477
singlet/doubletdoublet
Overlap genePrr16
Upstream geneTnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385
Downstream geneEG240289
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305C14.bB6Ng01-305C14.g
ACCGA098523GA098524
length9901,154
definitionB6Ng01-305C14.b B6Ng01-305C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,382,957 - 51,383,477)(51,194,819 - 51,195,947)
sequence
gaattcataatagcacagatactaacccactccaccgatttaatgttatc
ttttctgagtgtttatccctcaatgcagctaaaacttttgcagctgaaga
tgcaaaagcgaaagaagcatatgggtgtctctccttttgcattattccat
gaatgcatgtttcatgctttctggatgtttttagcacgttgaatatgcaa
tgtcttttcttttttattaaattaaaaacttccatctgctcccttaatta
aagcattgtatatctcttctttggcatttttatattgccagcatgactac
tctcgtgctttggagccattattaaataaaataaaggttactcgtacaca
atattgcagtatggttgtagttagggttactatgactgtgatgaaacacc
atgaccacagccatgccaataaaagaaaagcatttaattggggctggctc
acaggttcagaggtttggaccattagcatccttgcaggaagcatgacagt
gcacaggcagacgtggtgctggagtggtagctgagagtttggccttcaga
tagagaggtagcaggaagaaagacacttagcctgcgttgagcagctgaaa
cctcaaagcccaccacacttcctccaataagacatcacctactcaagcaa
ggcctcatgtcctaatagtcccaaaccccagggaccaagcattcaaatgt
atgaatgtctggaggccattttcattttaactacacaaatattataaatg
aaactcttataggcaatagggctttaaatgactatagtaacgagaggata
aataatgtggatgctagagaaagatgattttctttacaggatgcagacaa
agggaagaaacaaaattttgccatgttattcagtacagcatatattttta
agtcccatgggtttttcacctctacaaattttctgtcctggttcagatat
gacaatgtcctccacaaacactcaggatgataaaggatta

gaattctttacccaatattaatatctctgcaaccaaaatctgtgtgcatg
atgaccaaattctaggaaaggccttttcttttgttactgatgtcttcttt
taaaattattattattattatttattattattattattattattattatt
attactgtgtatggtgttttggaaatccttggcccagggaatggcattat
taggaggtatggtcatgttggagtggatgtgaccttgttggaggaaatat
gtcactgtgtgtttgggcattgagacccttctcctagctccctggaatcc
attcttttcctatttgcctttggaataagatgtagactctcatttcctcc
tgtgtcatgcctgtctagacactgctatactatactcccaccctgatgat
aatggactgaacctgtaagccagacccaataaaatgttgtcatatatatg
aatacatatatatattcctttgtttttaatcatgaataatgactattgaa
atcaccactcagggactccttttcaattattaagtcatgaatatcacaat
caaaatgactaggatgtttacttatatcccaggttgctcctcagtacttt
acatctatttaattatactctcacaaacatcagtagaagatcagtagcat
tcttgtccccacttgacaaataagtcaggatttgaaactatgaattttca
cttcagggctatcactcataacacttgtgtagtgctttgtacttcttaaa
ttattttgttcttatatttccttcttacaaggagatcttacattttatta
aatatgtgctcatgcttaaattttagtttttaatcttttaaaaagtatct
tacctctacctcttctcatctctatccatctatccatccatgtttctaat
catattttaaaggcttccctcccagacatattctccaaatgtgctaatat
tggtttacattaaatttttgcatgaattttgaatgccatggtttaaggtt
gcagtaaaattttaaccattaatttgttcattctctttgaaaatcaattt
gggcaaacaacataagtgaacagaatttcaacatatttttttctttacat
ggaatgtagatgaacgaacttaacaataacgattcccttgtcaagtgctg
atcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51382957_51383477
seq2: B6Ng01-305C14.b_48_569 (reverse)

seq1  CCAGCACCACGTCTGCCTGTGCACTGTCATGCTTCCTGCAAGGATGCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCACGTCTGCCTGTGCACTGTCATGCTTCCTGCAAGGATGCTAA  50

seq1  TGGTCCAAACCTCTGAACCTGTGAGCCAGCCCCAATTAAATGCTTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAAACCTCTGAACCTGTGAGCCAGCCCCAATTAAATGCTTTTCTT  100

seq1  TTATTGGCATGGCTGTGGTCATGGTGTTTCATCACAGTCATAGTAACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGCATGGCTGTGGTCATGGTGTTTCATCACAGTCATAGTAACCCT  150

seq1  AACTACAACCATACTGCAATATTGTGTACGAGTAACCTTTATTTTATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAACCATACTGCAATATTGTGTACGAGTAACCTTTATTTTATTTA  200

seq1  ATAATGGCTCCAAAGCACGAGAGTAGTCATGCTGGCAATATAAAAATGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGCTCCAAAGCACGAGAGTAGTCATGCTGGCAATATAAAAATGCC  250

seq1  AAAGAAGAGATATACAATGCTTTAATTAAGGGAGCAGATGGAAGTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAGATATACAATGCTTTAATTAAGGGAGCAGATGGAAGTTTTTA  300

seq1  ATTTAATAAAAAAGAAAAGACATTGCATATTCAACGTGCTAAAAACATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATAAAAAAGAAAAGACATTGCATATTCAACGTGCTAAAAACATCC  350

seq1  AGAAAGCATGAAACATGCATTCATGGAATAATGCAAAAGGAGAGACACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCATGAAACATGCATTCATGGAATAATGCAAAAGGAGAGACACCC  400

seq1  ATATGCTTCTTTCGCTTTTGCATCTTCAGCTGCAAAAGTTTTAGCTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTCTTTCGCTTTTGCATCTTCAGCTGCAAAAGTTTTAGCTGCAT  450

seq1  TGAGGGATAAACACTCAGAAAAGATAACATTAAATC-ATGGAGTGGGTTA  499
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  TGAGGGATAAACACTCAGAAAAGATAACATTAAATCGGTGGAGTGGGTTA  500

seq1  GTATCTGTGCTATTATGAATTC  521
      ||||||||||||||||||||||
seq2  GTATCTGTGCTATTATGAATTC  522


seq1: chr18_51194819_51195947
seq2: B6Ng01-305C14.g_66_1219

seq1  GAATTCTTTACCCAATATTAATATCTCTGCAACCAAAATCTGTGTGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACCCAATATTAATATCTCTGCAACCAAAATCTGTGTGCATG  50

seq1  ATGACCAAATTCTAGGAAAGGCCTTTTCTTTTGTTACTGATGTCTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAAATTCTAGGAAAGGCCTTTTCTTTTGTTACTGATGTCTTCTTT  100

seq1  TAAAATTATTATTATTATTATTTATTATTATTATTATTATTATTATTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATTATTATTATTATTTATTATTATTATTATTATTATTATTATT  150

seq1  ATTACTGTGTATGGTGTTTTGGAAATCCTTGGCCCAGGGAATGGCATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGTGTATGGTGTTTTGGAAATCCTTGGCCCAGGGAATGGCATTAT  200

seq1  TAGGAGGTATGGTCATGTTGGAGTGGATGTGACCTTGTTGGAGGAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGTATGGTCATGTTGGAGTGGATGTGACCTTGTTGGAGGAAATAT  250

seq1  GTCACTGTGTGTTTGGGCATTGAGACCCTTCTCCTAGCTCCCTGGAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTGTGTTTGGGCATTGAGACCCTTCTCCTAGCTCCCTGGAATCC  300

seq1  ATTCTTTTCCTATTTGCCTTTGGAATAAGATGTAGACTCTCATTTCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTCCTATTTGCCTTTGGAATAAGATGTAGACTCTCATTTCCTCC  350

seq1  TGTGTCATGCCTGTCTAGACACTGCTATACTATACTCCCACCCTGATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCATGCCTGTCTAGACACTGCTATACTATACTCCCACCCTGATGAT  400

seq1  AATGGACTGAACCTGTAAGCCAGACCCAATAAAATGTTGTCATATATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACTGAACCTGTAAGCCAGACCCAATAAAATGTTGTCATATATATG  450

seq1  AATACATATATATATTCCTTTGTTTTTAATCATGAATAATGACTATTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATATATATATTCCTTTGTTTTTAATCATGAATAATGACTATTGAA  500

seq1  ATCACCACTCAGGGACTCCTTTTCAATTATTAAGTCATGAATATCACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCACTCAGGGACTCCTTTTCAATTATTAAGTCATGAATATCACAAT  550

seq1  CAAAATGACTAGGATGTTTACTTATATCCCAGGTTGCTCCTCAGTACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGACTAGGATGTTTACTTATATCCCAGGTTGCTCCTCAGTACTTT  600

seq1  ACATCTATTTAATTATACTCTCACAAACATCAGTAGAAGATCAGTAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTATTTAATTATACTCTCACAAACATCAGTAGAAGATCAGTAGCAT  650

seq1  TCTTGTCCCCACTTGACAAATAAGTCAGGATTTGAAACTATGAATTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCCCCACTTGACAAATAAGTCAGGATTTGAAACTATGAATTTTCA  700

seq1  CTTCAGGGCTATCACTCATAACACTTGTGTAGTGCTTTGTACTTCTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGGCTATCACTCATAACACTTGTGTAGTGCTTTGTACTTCTTAAA  750

seq1  TTATTTTGTTCTTATATTTCCTTCTTACAAGGAGATCTTACA-TTTATTA  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTATTTTGTTCTTATATTTCCTTCTTACAAGGAGATCTTACATTTTATTA  800

seq1  AATATGTGCTCATGCTTAAATTTTAGTTTTTAATC-TTTAAAAAGTATC-  847
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  AATATGTGCTCATGCTTAAATTTTAGTTTTTAATCTTTTAAAAAGTATCT  850

seq1  TACCTCTACCTCTTCTCATCTCTATCCATCTATCCATCCATGTTTCT-AT  896
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TACCTCTACCTCTTCTCATCTCTATCCATCTATCCATCCATGTTTCTAAT  900

seq1  CATATTTTAAAGGCTTCCCT-CCAGACATATTCT-CAAATGTGCTAATAT  944
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  CATATTTTAAAGGCTTCCCTCCCAGACATATTCTCCAAATGTGCTAATAT  950

seq1  TGG-TTACATTAA--TTTTGCATGAATTTTGAATGCCATG--TTTAGGTT  989
      ||| |||||||||  |||||||||||||||||||||||||  || |||||
seq2  TGGTTTACATTAAATTTTTGCATGAATTTTGAATGCCATGGTTTAAGGTT  1000

seq1  GCAGTAAAATTT--ACACATAATTTGTCCA-TCTCTTTGAAAATCCATTT  1036
      ||||||||||||  ||   |||||||| || |||||||||||||| ||||
seq2  GCAGTAAAATTTTAACCATTAATTTGTTCATTCTCTTTGAAAATCAATTT  1050

seq1  GG--CAACAACATAAGTG-ACAG-ATTTCAACATATTTTTT--CTTACAT  1080
      ||   ||||||||||||| |||| |||||||||||||||||   ||||||
seq2  GGGCAAACAACATAAGTGAACAGAATTTCAACATATTTTTTTCTTTACAT  1100

seq1  GGAATGTAGATG-ACG-ACT--ACAATACAGA-TCCCTGGTCTAGTGCTG  1125
      |||||||||||| ||| |||  ||||||  || ||||| ||| |||||||
seq2  GGAATGTAGATGAACGAACTTAACAATAACGATTCCCTTGTCAAGTGCTG  1150

seq1  ATCC  1129
      ||||
seq2  ATCC  1154


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